MU63730 (transcribed_cluster) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MU63730
Type	transcribed_cluster
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	RNA-binding protein
Location	chr5 : 1876729 .. 1877611 (-)
Sequence length	459

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

ATTTTGTGAATCAATAGGAGAAGTTACAGAGGTTCGCGTTATGAGAAGTAAAGAATCAAATGAGAATAAGGGTTTTGCATTTGTTACCTTCAGAAGTGTAGAGTTGGCTTCAAAAGCAATCGATGAGCTGAATAACACCGAATTCAAGGGTAAGAAGATAAAATGTTCATCATCTCAAGCAAAGCACCGTTTGTTTATCGGTAATGTTCCCAGGAGCTGGGGTGAGGAAGATCTTAAGAAGGTTGTGACAGAAATTGGGCCTGGCGTTACTGCTGTGGAACTTGTAAAGGATATGAAGAATACTAGTAATAACAGGGGTTTTGCTTTTATTGATTACTATAATCATGCATGTGCTGAGTACTCAAGGCAGAAGATGATGAACCCAAAATTTAAGCTAGATGACAATGCTCCAACTGTTAGCTGGGCAGACCCAAAAAATGCTGATTCATCTGCTGCTTC

Library


Library category	ESTs
melon CM-PEa library	1

Homology

[Close]

BLAST of MU63730 vs. Swiss-Prot
Match: HNRPQ_HUMAN (Heterogeneous nuclear ribonucleoprotein Q OS=Homo sapiens GN=SYNCRIP PE=1 SV=2)

HSP 1 Score: 99.4 bits (246), Expect = 3.7e-20
Identity = 52/143 (36.36%), Postives = 83/143 (58.04%), Query Frame = 2


Query: 8   ESIGEVTEVRVMRSKESNENKGFAFVTFRSVELASKAIDELNNTEFK-GKKIKCSSSQAK 67
           E  G + ++R+M    +  N+G+AFVTF + E A +A+   NN E + GK I    S A 
Sbjct: 183 EKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVAN 242

Query: 68  HRLFIGNVPRSWGEEDLKKVVTEIGPGVTAVELVKDMKNTSNNRGFAFIDYYNHACAEYS 127
           +RLF+G++P+S  +E + +  +++  G+T V L     +   NRGF F++Y +H  A  +
Sbjct: 243 NRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQA 302

Query: 128 RQKMMNPKFKLDDNAPTVSWADP 187
           R+++M+ K K+  N  TV WADP
Sbjct: 303 RRRLMSGKVKVWGNVGTVEWADP 325

Query: 188  247
           
Sbjct: 363  325

Query: 248  307
           
Sbjct: 423  325

Query: 308  367
           
Sbjct: 483  325

Query: 368  427
           
Sbjct: 543  325

Query: 428  434
           
Sbjct: 603  325

[Close]

BLAST of MU63730 vs. Swiss-Prot
Match: HNRPQ_MOUSE (Heterogeneous nuclear ribonucleoprotein Q OS=Mus musculus GN=Syncrip PE=1 SV=2)

HSP 1 Score: 99.4 bits (246), Expect = 3.7e-20
Identity = 52/143 (36.36%), Postives = 83/143 (58.04%), Query Frame = 2


Query: 8   ESIGEVTEVRVMRSKESNENKGFAFVTFRSVELASKAIDELNNTEFK-GKKIKCSSSQAK 67
           E  G + ++R+M    +  N+G+AFVTF + E A +A+   NN E + GK I    S A 
Sbjct: 183 EKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVAN 242

Query: 68  HRLFIGNVPRSWGEEDLKKVVTEIGPGVTAVELVKDMKNTSNNRGFAFIDYYNHACAEYS 127
           +RLF+G++P+S  +E + +  +++  G+T V L     +   NRGF F++Y +H  A  +
Sbjct: 243 NRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQA 302

Query: 128 RQKMMNPKFKLDDNAPTVSWADP 187
           R+++M+ K K+  N  TV WADP
Sbjct: 303 RRRLMSGKVKVWGNVGTVEWADP 325

Query: 188  247
           
Sbjct: 363  325

Query: 248  307
           
Sbjct: 423  325

Query: 308  367
           
Sbjct: 483  325

Query: 368  427
           
Sbjct: 543  325

Query: 428  434
           
Sbjct: 603  325

[Close]

BLAST of MU63730 vs. Swiss-Prot
Match: HNRPQ_RAT (Heterogeneous nuclear ribonucleoprotein Q OS=Rattus norvegicus GN=Syncrip PE=2 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 3.7e-20
Identity = 52/143 (36.36%), Postives = 83/143 (58.04%), Query Frame = 2


Query: 8   ESIGEVTEVRVMRSKESNENKGFAFVTFRSVELASKAIDELNNTEFK-GKKIKCSSSQAK 67
           E  G + ++R+M    +  N+G+AFVTF + E A +A+   NN E + GK I    S A 
Sbjct: 93  EKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVAN 152

Query: 68  HRLFIGNVPRSWGEEDLKKVVTEIGPGVTAVELVKDMKNTSNNRGFAFIDYYNHACAEYS 127
           +RLF+G++P+S  +E + +  +++  G+T V L     +   NRGF F++Y +H  A  +
Sbjct: 153 NRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQA 212

Query: 128 RQKMMNPKFKLDDNAPTVSWADP 187
           R+++M+ K K+  N  TV WADP
Sbjct: 213 RRRLMSGKVKVWGNVGTVEWADP 235

Query: 188  247
           
Sbjct: 273  235

Query: 248  307
           
Sbjct: 333  235

Query: 308  367
           
Sbjct: 393  235

Query: 368  427
           
Sbjct: 453  235

Query: 428  434
           
Sbjct: 513  235

[Close]

BLAST of MU63730 vs. Swiss-Prot
Match: HNRPR_HUMAN (Heterogeneous nuclear ribonucleoprotein R OS=Homo sapiens GN=HNRNPR PE=1 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.2e-18
Identity = 47/143 (32.87%), Postives = 83/143 (58.04%), Query Frame = 2


Query: 8   ESIGEVTEVRVMRSKESNENKGFAFVTFRSVELASKAIDELNNTEFK-GKKIKCSSSQAK 67
           E  G + ++R+M    S +N+G+AF+TF   E A +A+   ++ E + GK +    S A 
Sbjct: 186 EKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVAN 245

Query: 68  HRLFIGNVPRSWGEEDLKKVVTEIGPGVTAVELVKDMKNTSNNRGFAFIDYYNHACAEYS 127
           +RLF+G++P++  +E++ +  +++  G+  V L     +   NRGF F++Y +H  A  +
Sbjct: 246 NRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQA 305

Query: 128 RQKMMNPKFKLDDNAPTVSWADP 187
           R+++M+ K K+  N  TV WADP
Sbjct: 306 RRRLMSGKVKVWGNVVTVEWADP 328

Query: 188  247
           
Sbjct: 366  328

Query: 248  307
           
Sbjct: 426  328

Query: 308  367
           
Sbjct: 486  328

Query: 368  427
           
Sbjct: 546  328

Query: 428  434
           
Sbjct: 606  328

HSP 2 Score: 31.6 bits (70), Expect = 9.4e+00
Identity = 21/60 (35.00%), Postives = 26/60 (43.33%), Query Frame = 2


Query: 68  KGFAFVTFRSVELASKAIDELNNTEFKGKKI-----KCSSSQAKHRLFIGNVPRSWGEED 127
           K +AFV F     A KA+DE+N  E +G++I     K    + K R       RS   ED
Sbjct: 374 KDYAFVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKERQAARQASRSTAYED 433

Query: 128  187
           
Sbjct: 434  433

Query: 188  233
           
Sbjct: 494  433

[Close]

BLAST of MU63730 vs. Swiss-Prot
Match: A1CF_MOUSE (APOBEC1 complementation factor OS=Mus musculus GN=A1cf PE=1 SV=2)

HSP 1 Score: 93.6 bits (231), Expect = 2.0e-18
Identity = 48/145 (33.10%), Postives = 85/145 (58.62%), Query Frame = 2


Query: 5   CESIGEVTEVRVMRSKESNENKGFAFVTFRSVELASKAIDELNNTEFK-GKKIKCSSSQA 64
           CE IG++ E+R+M     N N+G+AFVTF + + A  AI +LNN E + G+ +   +S  
Sbjct: 76  CEKIGKIYEMRLMMDFNGN-NRGYAFVTFSNKQEAKNAIKQLNNYEIRTGRLLGVCASVD 135

Query: 65  KHRLFIGNVPRSWGEEDLKKVVTEIGPGVTAVELVKDMKNTSNNRGFAFIDYYNHACAEY 124
             RLF+G +P++   E++   + ++  GV  V +     + + NRGFAF++Y +H  A  
Sbjct: 136 NCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAM 195

Query: 125 SRQKMMNPKFKLDDNAPTVSWADPK 184
           +R++++  + +L  +   V WA+P+
Sbjct: 196 ARRRLLPGRIQLWGHPIAVDWAEPE 219

Query: 185  244
           
Sbjct: 256  219

Query: 245  304
           
Sbjct: 316  219

Query: 305  364
           
Sbjct: 376  219

Query: 365  424
           
Sbjct: 436  219

Query: 425  437
           
Sbjct: 496  219

[Close]

BLAST of MU63730 vs. TrEMBL
Match: A0A0A0KI54_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G425690 PE=4 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 2.0e-81
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 2


Query: 2   FCESIGEVTEVRVMRSKESNENKGFAFVTFRSVELASKAIDELNNTEFKGKKIKCSSSQA 61
           FCESIGEVTEVRVMRSKESNENKGFAFVTFRSVELASKAIDELNNTEFKGKKIKCSSSQA
Sbjct: 143 FCESIGEVTEVRVMRSKESNENKGFAFVTFRSVELASKAIDELNNTEFKGKKIKCSSSQA 202

Query: 62  KHRLFIGNVPRSWGEEDLKKVVTEIGPGVTAVELVKDMKNTSNNRGFAFIDYYNHACAEY 121
           KHRLFIGNVPRSWGEEDLKKVVTEIGPGVTAVELVKDMKNTSNNRGFAFIDYYNHACAEY
Sbjct: 203 KHRLFIGNVPRSWGEEDLKKVVTEIGPGVTAVELVKDMKNTSNNRGFAFIDYYNHACAEY 262

Query: 122 SRQKMMNPKFKLDDNAPTVSWADPKNADSSAA 181
           SRQKMMNPKFKLDDNAPTVSWADPKNADSSAA
Sbjct: 263 SRQKMMNPKFKLDDNAPTVSWADPKNADSSAA 294

Query: 182  241
           
Sbjct: 323  294

Query: 242  301
           
Sbjct: 383  294

Query: 302  361
           
Sbjct: 443  294

Query: 362  421
           
Sbjct: 503  294

Query: 422  458
           
Sbjct: 563  294

[Close]

BLAST of MU63730 vs. TrEMBL
Match: F6HHF8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0080g00470 PE=4 SV=1)

HSP 1 Score: 291.6 bits (745), Expect = 5.6e-76
Identity = 138/152 (90.79%), Postives = 149/152 (98.03%), Query Frame = 2


Query: 2   FCESIGEVTEVRVMRSKESNENKGFAFVTFRSVELASKAIDELNNTEFKGKKIKCSSSQA 61
           FCES+GEVTEVR+M+ K+S ENKGFAFVTFR+VELASKAI+ELNNTEFKG+KIKCS+SQA
Sbjct: 143 FCESVGEVTEVRIMKGKDSGENKGFAFVTFRNVELASKAIEELNNTEFKGRKIKCSTSQA 202

Query: 62  KHRLFIGNVPRSWGEEDLKKVVTEIGPGVTAVELVKDMKNTSNNRGFAFIDYYNHACAEY 121
           KHRLFIGNVPRSWGEED+KKVVTEIGPGVTAVELVKDMKN+SNNRGFAFIDYYNHACAEY
Sbjct: 203 KHRLFIGNVPRSWGEEDIKKVVTEIGPGVTAVELVKDMKNSSNNRGFAFIDYYNHACAEY 262

Query: 122 SRQKMMNPKFKLDDNAPTVSWADPKNADSSAA 181
           SRQKMMNPKFKLD+NAPTVSWADPKNADSS A
Sbjct: 263 SRQKMMNPKFKLDNNAPTVSWADPKNADSSPA 294

Query: 182  241
           
Sbjct: 323  294

Query: 242  301
           
Sbjct: 383  294

Query: 302  361
           
Sbjct: 443  294

Query: 362  421
           
Sbjct: 503  294

Query: 422  458
           
Sbjct: 563  294

[Close]

BLAST of MU63730 vs. TrEMBL
Match: A0A061GV96_THECC (RNA-binding family protein isoform 1 OS=Theobroma cacao GN=TCM_041396 PE=4 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 1.7e-72
Identity = 129/152 (84.87%), Postives = 148/152 (97.37%), Query Frame = 2


Query: 2   FCESIGEVTEVRVMRSKESNENKGFAFVTFRSVELASKAIDELNNTEFKGKKIKCSSSQA 61
           FCES+GEVTEVR+M+ K+S+ENKGFAFVTFRSVELASKAIDELNN EFKG+KIKCS+SQ+
Sbjct: 128 FCESVGEVTEVRIMKGKDSSENKGFAFVTFRSVELASKAIDELNNAEFKGRKIKCSTSQS 187

Query: 62  KHRLFIGNVPRSWGEEDLKKVVTEIGPGVTAVELVKDMKNTSNNRGFAFIDYYNHACAEY 121
           KHRLFIGN+PRSWGEEDL+KVV+E+GPGVT +ELVKDMKN+SNNRGFAF++YYN+ACAEY
Sbjct: 188 KHRLFIGNIPRSWGEEDLRKVVSEVGPGVTGLELVKDMKNSSNNRGFAFVEYYNNACAEY 247

Query: 122 SRQKMMNPKFKLDDNAPTVSWADPKNADSSAA 181
           SRQKMMNP+F+L DNAPTVSWADPKNADSSAA
Sbjct: 248 SRQKMMNPEFRLGDNAPTVSWADPKNADSSAA 279

Query: 182  241
           
Sbjct: 308  279

Query: 242  301
           
Sbjct: 368  279

Query: 302  361
           
Sbjct: 428  279

Query: 362  421
           
Sbjct: 488  279

Query: 422  458
           
Sbjct: 548  279

[Close]

BLAST of MU63730 vs. TrEMBL
Match: A0A061GW55_THECC (RNA-binding family protein isoform 2 OS=Theobroma cacao GN=TCM_041396 PE=4 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 1.7e-72
Identity = 129/152 (84.87%), Postives = 148/152 (97.37%), Query Frame = 2


Query: 2   FCESIGEVTEVRVMRSKESNENKGFAFVTFRSVELASKAIDELNNTEFKGKKIKCSSSQA 61
           FCES+GEVTEVR+M+ K+S+ENKGFAFVTFRSVELASKAIDELNN EFKG+KIKCS+SQ+
Sbjct: 128 FCESVGEVTEVRIMKGKDSSENKGFAFVTFRSVELASKAIDELNNAEFKGRKIKCSTSQS 187

Query: 62  KHRLFIGNVPRSWGEEDLKKVVTEIGPGVTAVELVKDMKNTSNNRGFAFIDYYNHACAEY 121
           KHRLFIGN+PRSWGEEDL+KVV+E+GPGVT +ELVKDMKN+SNNRGFAF++YYN+ACAEY
Sbjct: 188 KHRLFIGNIPRSWGEEDLRKVVSEVGPGVTGLELVKDMKNSSNNRGFAFVEYYNNACAEY 247

Query: 122 SRQKMMNPKFKLDDNAPTVSWADPKNADSSAA 181
           SRQKMMNP+F+L DNAPTVSWADPKNADSSAA
Sbjct: 248 SRQKMMNPEFRLGDNAPTVSWADPKNADSSAA 279

Query: 182  241
           
Sbjct: 308  279

Query: 242  301
           
Sbjct: 368  279

Query: 302  361
           
Sbjct: 428  279

Query: 362  421
           
Sbjct: 488  279

Query: 422  458
           
Sbjct: 548  279

[Close]

BLAST of MU63730 vs. TrEMBL
Match: A0A0B2S2K5_GLYSO (Heterogeneous nuclear ribonucleoprotein Q OS=Glycine soja GN=glysoja_008178 PE=4 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 7.1e-71
Identity = 131/151 (86.75%), Postives = 141/151 (93.38%), Query Frame = 2


Query: 5   CESIGEVTEVRVMRSKESNENKGFAFVTFRSVELASKAIDELNNTEFKGKKIKCSSSQAK 64
           CE IGEV EVR+M+ K+S+ENKGF FVTFRSVELASKAI+ELNNTEF GKKIKCS SQAK
Sbjct: 144 CERIGEVAEVRIMKGKDSSENKGFGFVTFRSVELASKAIEELNNTEFMGKKIKCSKSQAK 203

Query: 65  HRLFIGNVPRSWGEEDLKKVVTEIGPGVTAVELVKDMKNTSNNRGFAFIDYYNHACAEYS 124
           HRLFIGNVPRSWG EDLKK+VTEIGPGVT VELVKDMKNT+NNRGFAFIDYYNHACAEYS
Sbjct: 204 HRLFIGNVPRSWGVEDLKKIVTEIGPGVTGVELVKDMKNTNNNRGFAFIDYYNHACAEYS 263

Query: 125 RQKMMNPKFKLDDNAPTVSWADPKNADSSAA 184
           RQKMM+P FKL +NAPTVSWADPKNA+SSAA
Sbjct: 264 RQKMMSPTFKLGENAPTVSWADPKNAESSAA 294

Query: 185  244
           
Sbjct: 324  294

Query: 245  304
           
Sbjct: 384  294

Query: 305  364
           
Sbjct: 444  294

Query: 365  424
           
Sbjct: 504  294

Query: 425  458
           
Sbjct: 564  294

[Close]

BLAST of MU63730 vs. TAIR10
Match: AT3G52660.1 (AT3G52660.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 226.5 bits (576), Expect = 1.1e-59
Identity = 106/155 (68.39%), Postives = 127/155 (81.94%), Query Frame = 2


Query: 2   FCESIGEVTEVRVMRSKESNENKGFAFVTFRSVELASKAIDELNNTEFKGKKIKCSSSQA 61
           FC SIGEVTEVR+MR K+S + KG+AFVTFRS +LA++AID LNNT+F+GK+IKCS++QA
Sbjct: 111 FCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAIDTLNNTDFRGKRIKCSTTQA 170

Query: 62  KHRLFIGNVPRSWGEEDLKKVVTEIGPGVTAVELVKDMKNTSNNRGFAFIDYYNHACAEY 121
           KHRLF+GNVPR+W E D+KK    IGPGV  VEL K+ +N   NRGFAFI+YYNHACAEY
Sbjct: 171 KHRLFLGNVPRNWMESDIKKAANRIGPGVQIVELPKEPQNMGRNRGFAFIEYYNHACAEY 230

Query: 122 SRQKMMNPKFKLDDNAPTVSWADPKN---ADSSAA 181
           S+QKM NP FKLDDNAPTVSWA+ ++    DSSA+
Sbjct: 231 SKQKMSNPSFKLDDNAPTVSWAESRSGGGGDSSAS 265

Query: 182  241
           
Sbjct: 291  265

Query: 242  301
           
Sbjct: 351  265

Query: 302  361
           
Sbjct: 411  265

Query: 362  421
           
Sbjct: 471  265

Query: 422  458
           
Sbjct: 531  265

[Close]

BLAST of MU63730 vs. TAIR10
Match: AT4G00830.1 (AT4G00830.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 199.1 bits (505), Expect = 1.9e-51
Identity = 85/151 (56.29%), Postives = 123/151 (81.46%), Query Frame = 2


Query: 5   CESIGEVTEVRVMRSKESNENKGFAFVTFRSVELASKAIDELNNTEFKGKKIKCSSSQAK 64
           CE IGE+ EVR+M+ ++S ++KG+AFV F++ ++A KAI+EL++ EFKGK I+CS S+ K
Sbjct: 136 CEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEELHSKEFKGKTIRCSLSETK 195

Query: 65  HRLFIGNVPRSWGEEDLKKVVTEIGPGVTAVELVKDMKNTSNNRGFAFIDYYNHACAEYS 124
           +RLFIGN+P++W E++ +KV+ ++GPGV  +EL+KD  NT+ NRGFAF+ YYN+ACA+YS
Sbjct: 196 NRLFIGNIPKNWTEDEFRKVIEDVGPGVENIELIKDPTNTTRNRGFAFVLYYNNACADYS 255

Query: 125 RQKMMNPKFKLDDNAPTVSWADPKNADSSAA 184
           RQKM++  FKL+ NAPTV+WADPK++   +A
Sbjct: 256 RQKMIDSNFKLEGNAPTVTWADPKSSPEHSA 286

Query: 185  244
           
Sbjct: 316  286

Query: 245  304
           
Sbjct: 376  286

Query: 305  364
           
Sbjct: 436  286

Query: 365  424
           
Sbjct: 496  286

Query: 425  458
           
Sbjct: 556  286

HSP 2 Score: 45.1 bits (105), Expect = 4.6e-05
Identity = 23/68 (33.82%), Postives = 43/68 (63.24%), Query Frame = 2


Query: 191 LFIGNVPRSWGEEDLKKVVTEIGPGVTAVELVKDMKNTSNNRGFAFIDYYNHACAEYSRQ 250
           +FIG +PR  GEEDL+ +  EIG  +  V L+KD +++ +++G+AF+ +     A+ + +
Sbjct: 118 VFIGGLPRDVGEEDLRDLCEEIGE-IFEVRLMKD-RDSGDSKGYAFVAFKTKDVAQKAIE 177

Query: 251 KMMNPKFK 310
           ++ + +FK
Sbjct: 178 ELHSKEFK 183

Query: 311  370
           
Sbjct: 238  183

Query: 371  395
           
Sbjct: 298  183

[Close]

BLAST of MU63730 vs. TAIR10
Match: AT2G44710.1 (AT2G44710.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 86.3 bits (212), Expect = 1.8e-17
Identity = 45/141 (31.91%), Postives = 81/141 (57.45%), Query Frame = 2


Query: 14  IGEVTEVRVMRSKESNENKGFAFVTFRSVELASKAIDELNNTEFKGKKIKCSSSQAKHRL 73
           +GEVTEVR++++ ++ ++KG AF+ F +VE A +A+ EL +    GKK   ++SQ    L
Sbjct: 237 VGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKRAVKELKSPMINGKKCGVTASQDNDTL 296

Query: 74  FIGNVPRSWGEEDLKKVVTEIG-PGVTAVELVKDMKNTSNNRGFAFIDYYNHACAEYSRQ 133
           F+GN+ + W  E L++ +   G   +  + LV+D  N + NRG+AF+++ + + A  + +
Sbjct: 297 FVGNICKIWTPEALREKLKHYGVENMDDITLVEDSNNVNMNRGYAFLEFSSRSDAMDAHK 356

Query: 134 KMMNPKFKLDDNAPT-VSWAD 193
           +++          P  VS+ D
Sbjct: 357 RLVKKDVMFGVEKPAKVSFTD 377

Query: 194  253
           
Sbjct: 417  377

Query: 254  313
           
Sbjct: 477  377

Query: 314  373
           
Sbjct: 537  377

Query: 374  431
           
Sbjct: 597  377

HSP 2 Score: 35.4 bits (80), Expect = 3.7e-02
Identity = 20/65 (30.77%), Postives = 37/65 (56.92%), Query Frame = 2


Query: 191 LFIGNVPRSWGEEDLKKVVTEIGPGVTAVELVKDMKNTSNNRGFAFIDYYNHACAEYSRQ 250
           +F+G++ +   EEDLKKV   +G  VT V ++K+   T  ++G AF+ +     A+ + +
Sbjct: 216 IFVGSLDKGASEEDLKKVFGHVGE-VTEVRILKN-PQTKKSKGSAFLRFATVEQAKRAVK 275

Query: 251 KMMNP 310
           ++ +P
Sbjct: 276 ELKSP 278

Query: 311  370
           
Sbjct: 336  278

Query: 371  386
           
Sbjct: 396  278

HSP 3 Score: 30.0 bits (66), Expect = 1.5e+00
Identity = 15/42 (35.71%), Postives = 21/42 (50.00%), Query Frame = 2


Query: 17  GEVTEVRVMRSKESNENKGFAFVTFRSVELASKAIDELNNTE 76
           G++ +V + R+  S   K F FVTF + E A      +NN+E
Sbjct: 415 GKLEKVELARNMPSARRKDFGFVTFDTHEAAVSCAKFINNSE 456

Query: 77   136
           
Sbjct: 475  456

Query: 137  143
           
Sbjct: 535  456

[Close]

BLAST of MU63730 vs. TAIR10
Match: AT1G60000.1 (AT1G60000.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 58.9 bits (141), Expect = 3.1e-09
Identity = 42/147 (28.57%), Postives = 74/147 (50.34%), Query Frame = 2


Query: 32  VRVMRSKESNENKGFAFVTFRSVELASKAIDELNNTEFKGKKIKCSSS------------ 91
           V V+ ++++ +++GFAFVT  +VE  +  ID L+ TE+ G+ +K + +            
Sbjct: 114 VEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDNLDGTEYLGRALKVNFADKPKPNKEPLYP 173

Query: 92  QAKHRLFIGNVPRSWGEEDLKKVVTEIGPGVTAVELVKDMKNTSNNRGFAFIDYYNHACA 151
           + +H+LF+GN+  +   E L     E G  V    +V D  +T  +RG+ F+ Y + A  
Sbjct: 174 ETEHKLFVGNLSWTVTSESLAGAFRECG-DVVGARVVFD-GDTGRSRGYGFVCYSSKAEM 233

Query: 152 EYSRQKMMNPKFKLDDNAPTVSWADPK 211
           E + + +    F+L+  A  V+ A  K
Sbjct: 234 ETALESL--DGFELEGRAIRVNLAQGK 256

Query: 212  271
           
Sbjct: 294  256

Query: 272  331
           
Sbjct: 354  256

Query: 332  391
           
Sbjct: 414  256

Query: 392  437
           
Sbjct: 474  256

[Close]

BLAST of MU63730 vs. TAIR10
Match: AT3G13224.2 (AT3G13224.2 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 53.9 bits (128), Expect = 9.9e-08
Identity = 36/152 (23.68%), Postives = 71/152 (46.71%), Query Frame = 2


Query: 17  GEVTEVRVMRSKESNENKGFAFVTFRSVELASKAIDELNNTEFKGKKIK------CSSSQ 76
           GE+T+  +MR + + + +GF F+TF    +  K I++ +    K  +IK         +Q
Sbjct: 43  GEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIEDTHVINGKQVEIKRTIPKGAGGNQ 102

Query: 77  AK----HRLFIGNVPRSWGEEDLKKVVTEIGPGVTAVELVKDMKNTSNNRGFAFIDYYNH 136
           +K     ++F+G +P +  E++LK    + G  V   ++++D   T+ +RGF F+ + + 
Sbjct: 103 SKDIKTKKIFVGGIPSTVTEDELKDFFAKYG-NVVEHQVIRD-HETNRSRGFGFVIFDSE 162

Query: 137 ACAEYSRQKMMNPKFKLDDNAPTVSWADPKNA 196
              +    K       + D    +  A+PK +
Sbjct: 163 EVVDELLSK--GNMIDMADTQVEIKKAEPKKS 190

Query: 197  256
           
Sbjct: 223  190

Query: 257  316
           
Sbjct: 283  190

Query: 317  376
           
Sbjct: 343  190

Query: 377  436
           
Sbjct: 403  190

Query: 437  443
           
Sbjct: 463  190

HSP 2 Score: 38.5 bits (88), Expect = 4.3e-03
Identity = 21/74 (28.38%), Postives = 35/74 (47.30%), Query Frame = 2


Query: 2   FCESIGEVTEVRVMRSKESNENKGFAFVTFRSVELASKAIDELNNTEFKGKKIKCSSSQA 61
           F    G V E +V+R  E+N ++GF FV F S E+  + + + N  +    +++   ++ 
Sbjct: 128 FFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGNMIDMADTQVEIKKAEP 187

Query: 62  KHRLFIGNVPRSWG 121
           K  L     P S+G
Sbjct: 188 KKSL--NRSPPSYG 199

Query: 122  181
           
Sbjct: 248  199

Query: 182  224
           
Sbjct: 308  199

[Close]

BLAST of MU63730 vs. NCBI nr
Match: gi|778722315|ref|XP_011658459.1| (PREDICTED: nucleolin [Cucumis sativus])

HSP 1 Score: 308.5 bits (789), Expect = 6.4e-81
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 2


Query: 2   FCESIGEVTEVRVMRSKESNENKGFAFVTFRSVELASKAIDELNNTEFKGKKIKCSSSQA 61
           FCESIGEVTEVRVMRSKESNENKGFAFVTFRSVELASKAIDELNNTEFKGKKIKCSSSQA
Sbjct: 412 FCESIGEVTEVRVMRSKESNENKGFAFVTFRSVELASKAIDELNNTEFKGKKIKCSSSQA 471

Query: 62  KHRLFIGNVPRSWGEEDLKKVVTEIGPGVTAVELVKDMKNTSNNRGFAFIDYYNHACAEY 121
           KHRLFIGNVPRSWGEEDLKKVVTEIGPGVTAVELVKDMKNTSNNRGFAFIDYYNHACAEY
Sbjct: 472 KHRLFIGNVPRSWGEEDLKKVVTEIGPGVTAVELVKDMKNTSNNRGFAFIDYYNHACAEY 531

Query: 122 SRQKMMNPKFKLDDNAPTVSWADPKNADSSAA 181
           SRQKMMNPKFKLDDNAPTVSWADPKNADSSAA
Sbjct: 532 SRQKMMNPKFKLDDNAPTVSWADPKNADSSAA 563

Query: 182  241
           
Sbjct: 592  563

Query: 242  301
           
Sbjct: 652  563

Query: 302  361
           
Sbjct: 712  563

Query: 362  421
           
Sbjct: 772  563

Query: 422  458
           
Sbjct: 832  563

[Close]

BLAST of MU63730 vs. NCBI nr
Match: gi|700192828|gb|KGN48032.1| (hypothetical protein Csa_6G425690 [Cucumis sativus])

HSP 1 Score: 308.5 bits (789), Expect = 6.4e-81
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 2


Query: 2   FCESIGEVTEVRVMRSKESNENKGFAFVTFRSVELASKAIDELNNTEFKGKKIKCSSSQA 61
           FCESIGEVTEVRVMRSKESNENKGFAFVTFRSVELASKAIDELNNTEFKGKKIKCSSSQA
Sbjct: 143 FCESIGEVTEVRVMRSKESNENKGFAFVTFRSVELASKAIDELNNTEFKGKKIKCSSSQA 202

Query: 62  KHRLFIGNVPRSWGEEDLKKVVTEIGPGVTAVELVKDMKNTSNNRGFAFIDYYNHACAEY 121
           KHRLFIGNVPRSWGEEDLKKVVTEIGPGVTAVELVKDMKNTSNNRGFAFIDYYNHACAEY
Sbjct: 203 KHRLFIGNVPRSWGEEDLKKVVTEIGPGVTAVELVKDMKNTSNNRGFAFIDYYNHACAEY 262

Query: 122 SRQKMMNPKFKLDDNAPTVSWADPKNADSSAA 181
           SRQKMMNPKFKLDDNAPTVSWADPKNADSSAA
Sbjct: 263 SRQKMMNPKFKLDDNAPTVSWADPKNADSSAA 294

Query: 182  241
           
Sbjct: 323  294

Query: 242  301
           
Sbjct: 383  294

Query: 302  361
           
Sbjct: 443  294

Query: 362  421
           
Sbjct: 503  294

Query: 422  458
           
Sbjct: 563  294

[Close]

BLAST of MU63730 vs. NCBI nr
Match: gi|659097353|ref|XP_008449579.1| (PREDICTED: nucleolin [Cucumis melo])

HSP 1 Score: 308.5 bits (789), Expect = 6.4e-81
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 2


Query: 2   FCESIGEVTEVRVMRSKESNENKGFAFVTFRSVELASKAIDELNNTEFKGKKIKCSSSQA 61
           FCESIGEVTEVRVMRSKESNENKGFAFVTFRSVELASKAIDELNNTEFKGKKIKCSSSQA
Sbjct: 143 FCESIGEVTEVRVMRSKESNENKGFAFVTFRSVELASKAIDELNNTEFKGKKIKCSSSQA 202

Query: 62  KHRLFIGNVPRSWGEEDLKKVVTEIGPGVTAVELVKDMKNTSNNRGFAFIDYYNHACAEY 121
           KHRLFIGNVPRSWGEEDLKKVVTEIGPGVTAVELVKDMKNTSNNRGFAFIDYYNHACAEY
Sbjct: 203 KHRLFIGNVPRSWGEEDLKKVVTEIGPGVTAVELVKDMKNTSNNRGFAFIDYYNHACAEY 262

Query: 122 SRQKMMNPKFKLDDNAPTVSWADPKNADSSAA 181
           SRQKMMNPKFKLDDNAPTVSWADPKNADSSAA
Sbjct: 263 SRQKMMNPKFKLDDNAPTVSWADPKNADSSAA 294

Query: 182  241
           
Sbjct: 323  294

Query: 242  301
           
Sbjct: 383  294

Query: 302  361
           
Sbjct: 443  294

Query: 362  421
           
Sbjct: 503  294

Query: 422  458
           
Sbjct: 563  294

[Close]

BLAST of MU63730 vs. NCBI nr
Match: gi|225464938|ref|XP_002275366.1| (PREDICTED: heterogeneous nuclear ribonucleoprotein R-like [Vitis vinifera])

HSP 1 Score: 290.4 bits (742), Expect = 1.8e-75
Identity = 138/152 (90.79%), Postives = 149/152 (98.03%), Query Frame = 2


Query: 2   FCESIGEVTEVRVMRSKESNENKGFAFVTFRSVELASKAIDELNNTEFKGKKIKCSSSQA 61
           FCES+GEVTEVR+M+ K+S ENKGFAFVTFR+VELASKAI+ELNNTEFKG+KIKCS+SQA
Sbjct: 143 FCESVGEVTEVRIMKGKDSGENKGFAFVTFRNVELASKAIEELNNTEFKGRKIKCSTSQA 202

Query: 62  KHRLFIGNVPRSWGEEDLKKVVTEIGPGVTAVELVKDMKNTSNNRGFAFIDYYNHACAEY 121
           KHRLFIGNVPRSWGEED+KKVVTEIGPGVTAVELVKDMKN+SNNRGFAFIDYYNHACAEY
Sbjct: 203 KHRLFIGNVPRSWGEEDIKKVVTEIGPGVTAVELVKDMKNSSNNRGFAFIDYYNHACAEY 262

Query: 122 SRQKMMNPKFKLDDNAPTVSWADPKNADSSAA 181
           SRQKMMNPKFKLD+NAPTVSWADPKNADSS A
Sbjct: 263 SRQKMMNPKFKLDNNAPTVSWADPKNADSSPA 294

Query: 182  241
           
Sbjct: 323  294

Query: 242  301
           
Sbjct: 383  294

Query: 302  361
           
Sbjct: 443  294

Query: 362  421
           
Sbjct: 503  294

Query: 422  458
           
Sbjct: 563  294

[Close]

BLAST of MU63730 vs. NCBI nr
Match: gi|296084906|emb|CBI28315.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 290.4 bits (742), Expect = 1.8e-75
Identity = 138/152 (90.79%), Postives = 149/152 (98.03%), Query Frame = 2


Query: 2   FCESIGEVTEVRVMRSKESNENKGFAFVTFRSVELASKAIDELNNTEFKGKKIKCSSSQA 61
           FCES+GEVTEVR+M+ K+S ENKGFAFVTFR+VELASKAI+ELNNTEFKG+KIKCS+SQA
Sbjct: 74  FCESVGEVTEVRIMKGKDSGENKGFAFVTFRNVELASKAIEELNNTEFKGRKIKCSTSQA 133

Query: 62  KHRLFIGNVPRSWGEEDLKKVVTEIGPGVTAVELVKDMKNTSNNRGFAFIDYYNHACAEY 121
           KHRLFIGNVPRSWGEED+KKVVTEIGPGVTAVELVKDMKN+SNNRGFAFIDYYNHACAEY
Sbjct: 134 KHRLFIGNVPRSWGEEDIKKVVTEIGPGVTAVELVKDMKNSSNNRGFAFIDYYNHACAEY 193

Query: 122 SRQKMMNPKFKLDDNAPTVSWADPKNADSSAA 181
           SRQKMMNPKFKLD+NAPTVSWADPKNADSS A
Sbjct: 194 SRQKMMNPKFKLDNNAPTVSWADPKNADSSPA 225

Query: 182  241
           
Sbjct: 254  225

Query: 242  301
           
Sbjct: 314  225

Query: 302  361
           
Sbjct: 374  225

Query: 362  421
           
Sbjct: 434  225

Query: 422  458
           
Sbjct: 494  225

The following BLAST results are available for this feature:

BLAST of MU63730 vs. Swiss-Prot


Match Name	E-value	Identity	Description
HNRPQ_HUMAN	3.7e-20	36.36	Heterogeneous nuclear ribonucleoprotein Q OS=Homo sapiens GN=SYNCRIP PE=1 SV=2	[more]
HNRPQ_MOUSE	3.7e-20	36.36	Heterogeneous nuclear ribonucleoprotein Q OS=Mus musculus GN=Syncrip PE=1 SV=2	[more]
HNRPQ_RAT	3.7e-20	36.36	Heterogeneous nuclear ribonucleoprotein Q OS=Rattus norvegicus GN=Syncrip PE=2 S...	[more]
HNRPR_HUMAN	1.2e-18	32.87	Heterogeneous nuclear ribonucleoprotein R OS=Homo sapiens GN=HNRNPR PE=1 SV=1	[more]
A1CF_MOUSE	2.0e-18	33.10	APOBEC1 complementation factor OS=Mus musculus GN=A1cf PE=1 SV=2	[more]

BLAST of MU63730 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KI54_CUCSA	2.0e-81	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G425690 PE=4 SV=1	[more]
F6HHF8_VITVI	5.6e-76	90.79	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0080g00470 PE=4 SV=...	[more]
A0A061GV96_THECC	1.7e-72	84.87	RNA-binding family protein isoform 1 OS=Theobroma cacao GN=TCM_041396 PE=4 SV=1	[more]
A0A061GW55_THECC	1.7e-72	84.87	RNA-binding family protein isoform 2 OS=Theobroma cacao GN=TCM_041396 PE=4 SV=1	[more]
A0A0B2S2K5_GLYSO	7.1e-71	86.75	Heterogeneous nuclear ribonucleoprotein Q OS=Glycine soja GN=glysoja_008178 PE=4...	[more]

BLAST of MU63730 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G52660.1	1.1e-59	68.39	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G00830.1	1.9e-51	56.29	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G44710.1	1.8e-17	31.91	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G60000.1	3.1e-09	28.57	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G13224.2	9.9e-08	23.68	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

BLAST of MU63730 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778722315\|ref\|XP_011658459.1\|	6.4e-81	100.00	PREDICTED: nucleolin [Cucumis sativus]	[more]
gi\|700192828\|gb\|KGN48032.1\|	6.4e-81	100.00	hypothetical protein Csa_6G425690 [Cucumis sativus]	[more]
gi\|659097353\|ref\|XP_008449579.1\|	6.4e-81	100.00	PREDICTED: nucleolin [Cucumis melo]	[more]
gi\|225464938\|ref\|XP_002275366.1\|	1.8e-75	90.79	PREDICTED: heterogeneous nuclear ribonucleoprotein R-like [Vitis vinifera]	[more]
gi\|296084906\|emb\|CBI28315.3\|	1.8e-75	90.79	unnamed protein product [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C014502	MELO3C014502	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
PEa0016P14	PEa0016P14	EST

InterPro

Analysis Name: InterPro Annotations of melon unigene v4
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 65..129 score: 9.1E-11coord: 3..55 score: 2.3
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 64..141 score: 2.0E-10coord: 1..57 score: 2.
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 63..145 score: 11.861coord: 1..61 score: 14
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 2..62 score: 3.1E-18coord: 63..147 score: 3.8
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 2..149 score: 3.46
None	No IPR available	PANTHER	PTHR24012	FAMILY NOT NAMED	coord: 2..107 score: 5.6
None	No IPR available	PANTHER	PTHR24012:SF356	SUBFAMILY NOT NAMED	coord: 2..107 score: 5.6