MU63487 (transcribed_cluster) Melon (DHL92) v3.5.1

NameMU63487
Typetranscribed_cluster
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionPentatricopeptide repeat-containing protein, putative
Locationchr10 : 13913255 .. 13914053 (+)
Sequence length798
The following sequences are available for this feature:

transcribed_cluster sequence

CTATTTTTTTGTTAAACCGCCAATAAACCCCCCCTCTCGTTCATCCGCCTTCGAACTGGAGTCGATATTCCACTACTGGGAAAAGCCTACAATGCAACAATGAAGGAAGAAGTTTCGTATCGTCATCTTTAATTTTAGGATTCGGAAATGGATCATCAAATTCTTTCATTCCCACTTAGGTTAGCCACAAACGTTTCAAATCTTTGTTCAATTTGGTATCGTCGTCTCTAGAAGTGGAGAAATTCGCAGTTCAATAGCGCAGTTCGTTTCGGAGTTTTCATAATTCATCACCTATCTCTGCTCCATAAATTTCTGCAAGATTCAGATAATAAGGTGTGCTCATTTCGATACTTAGGAAGTTTGATTTTCTGCATTTGATTCAAATTCAATACACCGATTTTTGAAATCTGTTTGATTAAATTTGTGGGTTTGCTGGTAATCTACGCATTTATGTTCTTAGTCTTTTGATTATATATGGATTTTGTGATATGGAATATTAATTTCCCTATCCAAAGAACCAAACGACGTAATACAAAACCTCAAAACCTCAGAGCTTGTGAAAAGAAGGCTTAGGGGATGAATCTACTTCTCCAAAGTATGTTTGCCGTTGTGGTAAAAGGTCATTGGAATCACCTCTTGAAGCCTAAGATTAGTTCTAGCTTAACATCCAAATCCATCCACCAGATTCTCTTTCGGCTGTCGTTTTACTGTTCAGGTCCTTCACTTTCTTGGGCGTTTTTTCAGTGGGTTGAGTTGATTCCTGATTATAAGCATTCTTTGCAGTCCTCATGGCCCATG
Library categoryESTs
melon CM-PEa library1
BLAST of MU63487 vs. Swiss-Prot
Match: PP404_ARATH (Pentatricopeptide repeat-containing protein At5g38730 OS=Arabidopsis thaliana GN=At5g38730 PE=2 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.9e-12
Identity = 39/88 (44.32%), Postives = 54/88 (61.36%), Query Frame = 1

Query: 544 NLRACEKKA*GMNLLLQSMFAVVVKGHWNHLLKPKISSSLTSKSIH-QILFRLSFYCS-- 603
           NL +  ++A    L+ QS+ A V+KG+W ++LK K+ S L   +I  Q++  LS +    
Sbjct: 3   NLLSANREA----LIAQSICATVLKGNWKNILKHKVDSGLLKSAITTQVISELSLFSGYG 62

Query: 604 GPSLSWAFFQWVELIPDYKHSLQSSWPM 663
           GPSLSW+FF W + +P  KHSLQSSW M
Sbjct: 63  GPSLSWSFFIWTDSLPSSKHSLQSSWKM 86

Query: 664 723
           
Sbjct: 123 86

Query: 724 783
           
Sbjct: 183 86

Query: 784 799
           
Sbjct: 243 86

BLAST of MU63487 vs. TrEMBL
Match: A0A0A0KSX6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G289620 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 4.6e-33
Identity = 70/74 (94.59%), Postives = 72/74 (97.30%), Query Frame = 1

Query: 577 MNLLLQSMFAVVVKGHWNHLLKPKISSSLTSKSIHQILFRLSFYCSGPSLSWAFFQWVEL 636
           MNLL+QSMFAVVVKGHWNHLLKPKISSSLTSKSIHQIL RLSFYCSGPSLSWAFF+WVEL
Sbjct: 1   MNLLVQSMFAVVVKGHWNHLLKPKISSSLTSKSIHQILLRLSFYCSGPSLSWAFFKWVEL 60

Query: 637 IPDYKHSLQSSWPM 696
           IPDYKHSLQSSW M
Sbjct: 61  IPDYKHSLQSSWAM 74

Query: 697 756
           
Sbjct: 121 74

Query: 757 799
           
Sbjct: 181 74

BLAST of MU63487 vs. TrEMBL
Match: M5W6W2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016546mg PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.4e-18
Identity = 46/75 (61.33%), Postives = 57/75 (76.00%), Query Frame = 1

Query: 574 GMNLLLQSMFAVVVKGHWNHLLKPKISSSLTSKSIHQILFRLSFYCSGPSLSWAFFQWVE 633
           G    + S+ AVVVKGHWN++LKPKI SSL+S +IHQ+L +LS +  GPS SWAFF+WV+
Sbjct: 9   GETQFIHSLCAVVVKGHWNNILKPKIGSSLSSANIHQVLLQLSLHGYGPSPSWAFFKWVQ 68

Query: 634 LIPDYKHSLQSSWPM 693
            IP YKHSLQ  W M
Sbjct: 69  SIPTYKHSLQCCWTM 83

Query: 694 753
           
Sbjct: 129 83

Query: 754 799
           
Sbjct: 189 83

BLAST of MU63487 vs. TrEMBL
Match: A0A061EI73_THECC (Tetratricopeptide repeat (TPR)-like superfamily protein OS=Theobroma cacao GN=TCM_019631 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 2.1e-17
Identity = 40/69 (57.97%), Postives = 58/69 (84.06%), Query Frame = 1

Query: 595 SMFAVVVKGHWNHLLKPKISSSLTSKSIHQILFRLSFYCSGPSLSWAFFQWVEL-IPDYK 654
           ++F +++KGHWN LLKPKI + LTS +I+ +L++LS +CS PSLSW+FF+W+E+ IP+Y 
Sbjct: 16  TIFTIILKGHWNTLLKPKICTQLTSTTINYLLYKLSLFCSSPSLSWSFFKWIEISIPNYD 75

Query: 655 HSLQSSWPM 714
           HSLQS+W M
Sbjct: 76  HSLQSTWAM 84

Query: 715 774
           
Sbjct: 136 84

Query: 775 799
           
Sbjct: 196 84

BLAST of MU63487 vs. TrEMBL
Match: B9T3S4_RICCO (Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0447170 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.0e-16
Identity = 42/72 (58.33%), Postives = 58/72 (80.56%), Query Frame = 1

Query: 586 LLQSMFAVVVKGHWNHLLKPKISSSLTSKSIHQILFRLSFYCSGPSLSWAFFQWVE-LIP 645
           L+Q++ A V+KG WN+LL+PKI S LT+ ++HQ+L++LS +  GP LSWA F+W+E  IP
Sbjct: 13  LVQNICATVIKGGWNNLLRPKICSILTASTLHQVLYQLSLHSQGPCLSWALFKWIESSIP 72

Query: 646 DYKHSLQSSWPM 705
           +YKHSLQSSW M
Sbjct: 73  NYKHSLQSSWTM 84

Query: 706 765
           
Sbjct: 133 84

Query: 766 799
           
Sbjct: 193 84

BLAST of MU63487 vs. TrEMBL
Match: A0A0D2RK75_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G232200 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 4.3e-15
Identity = 39/70 (55.71%), Postives = 53/70 (75.71%), Query Frame = 1

Query: 592 QSMFAVVVKGHWNHLLKPKISSSLTSKSIHQILFRLSFYCSGPSLSWAFFQWVE-LIPDY 651
           Q++F +++KGHWNHLL+PKI S +TS +I+ +L  LS +    SLSW+FFQWV+  IP Y
Sbjct: 9   QTIFTIILKGHWNHLLEPKICSQITSTTINHLLLHLSVFSCNASLSWSFFQWVKNSIPTY 68

Query: 652 KHSLQSSWPM 711
            HSLQS+W M
Sbjct: 69  NHSLQSTWTM 78

Query: 712 771
           
Sbjct: 129 78

Query: 772 799
           
Sbjct: 189 78

BLAST of MU63487 vs. TAIR10
Match: AT5G38730.1 (AT5G38730.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 73.9 bits (180), Expect = 1.6e-13
Identity = 39/88 (44.32%), Postives = 54/88 (61.36%), Query Frame = 1

Query: 544 NLRACEKKA*GMNLLLQSMFAVVVKGHWNHLLKPKISSSLTSKSIH-QILFRLSFYCS-- 603
           NL +  ++A    L+ QS+ A V+KG+W ++LK K+ S L   +I  Q++  LS +    
Sbjct: 3   NLLSANREA----LIAQSICATVLKGNWKNILKHKVDSGLLKSAITTQVISELSLFSGYG 62

Query: 604 GPSLSWAFFQWVELIPDYKHSLQSSWPM 663
           GPSLSW+FF W + +P  KHSLQSSW M
Sbjct: 63  GPSLSWSFFIWTDSLPSSKHSLQSSWKM 86

Query: 664 723
           
Sbjct: 123 86

Query: 724 783
           
Sbjct: 183 86

Query: 784 799
           
Sbjct: 243 86

BLAST of MU63487 vs. NCBI nr
Match: gi|659130537|ref|XP_008465224.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g38730 [Cucumis melo])

HSP 1 Score: 153.3 bits (386), Expect = 6.0e-34
Identity = 72/74 (97.30%), Postives = 73/74 (98.65%), Query Frame = 1

Query: 577 MNLLLQSMFAVVVKGHWNHLLKPKISSSLTSKSIHQILFRLSFYCSGPSLSWAFFQWVEL 636
           MNLLLQSMFAVVVKGHWNHLLKPKISSSLTSKSIHQILFRLSFYCSGPSLSWAFF+WVEL
Sbjct: 1   MNLLLQSMFAVVVKGHWNHLLKPKISSSLTSKSIHQILFRLSFYCSGPSLSWAFFKWVEL 60

Query: 637 IPDYKHSLQSSWPM 696
           IPDYKHSLQSSW M
Sbjct: 61  IPDYKHSLQSSWAM 74

Query: 697 756
           
Sbjct: 121 74

Query: 757 799
           
Sbjct: 181 74

BLAST of MU63487 vs. NCBI nr
Match: gi|449445409|ref|XP_004140465.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g38730 [Cucumis sativus])

HSP 1 Score: 149.8 bits (377), Expect = 6.6e-33
Identity = 70/74 (94.59%), Postives = 72/74 (97.30%), Query Frame = 1

Query: 577 MNLLLQSMFAVVVKGHWNHLLKPKISSSLTSKSIHQILFRLSFYCSGPSLSWAFFQWVEL 636
           MNLL+QSMFAVVVKGHWNHLLKPKISSSLTSKSIHQIL RLSFYCSGPSLSWAFF+WVEL
Sbjct: 1   MNLLVQSMFAVVVKGHWNHLLKPKISSSLTSKSIHQILLRLSFYCSGPSLSWAFFKWVEL 60

Query: 637 IPDYKHSLQSSWPM 696
           IPDYKHSLQSSW M
Sbjct: 61  IPDYKHSLQSSWAM 74

Query: 697 756
           
Sbjct: 121 74

Query: 757 799
           
Sbjct: 181 74

BLAST of MU63487 vs. NCBI nr
Match: gi|645219075|ref|XP_008233899.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g38730 [Prunus mume])

HSP 1 Score: 101.7 bits (252), Expect = 2.1e-18
Identity = 47/75 (62.67%), Postives = 57/75 (76.00%), Query Frame = 1

Query: 574 GMNLLLQSMFAVVVKGHWNHLLKPKISSSLTSKSIHQILFRLSFYCSGPSLSWAFFQWVE 633
           G    +QS+ AVVVKG WN++LKPKI SSL+S +IHQ+L +LS +  GPS SWAFF+WVE
Sbjct: 9   GETQFIQSLCAVVVKGQWNNILKPKIGSSLSSANIHQVLLQLSLHGYGPSPSWAFFKWVE 68

Query: 634 LIPDYKHSLQSSWPM 693
            IP YKHSLQ  W M
Sbjct: 69  SIPTYKHSLQCCWTM 83

Query: 694 753
           
Sbjct: 129 83

Query: 754 799
           
Sbjct: 189 83

BLAST of MU63487 vs. NCBI nr
Match: gi|470103572|ref|XP_004288209.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g38730 [Fragaria vesca subsp. vesca])

HSP 1 Score: 101.7 bits (252), Expect = 2.1e-18
Identity = 44/71 (61.97%), Postives = 57/71 (80.28%), Query Frame = 1

Query: 586 LLQSMFAVVVKGHWNHLLKPKISSSLTSKSIHQILFRLSFYCSGPSLSWAFFQWVELIPD 645
           L+QS+FA+V+KGHW+HLL PK+ S LTS +IHQ+L +LS Y   PSLS +FF+W E +P+
Sbjct: 13  LIQSLFAIVLKGHWSHLLNPKLGSCLTSSAIHQVLLQLSLYGYTPSLSLSFFKWAESLPN 72

Query: 646 YKHSLQSSWPM 705
           YKHSLQ SW M
Sbjct: 73  YKHSLQCSWTM 83

Query: 706 765
           
Sbjct: 133 83

Query: 766 799
           
Sbjct: 193 83

BLAST of MU63487 vs. NCBI nr
Match: gi|595841665|ref|XP_007208255.1| (hypothetical protein PRUPE_ppa016546mg [Prunus persica])

HSP 1 Score: 101.7 bits (252), Expect = 2.1e-18
Identity = 46/75 (61.33%), Postives = 57/75 (76.00%), Query Frame = 1

Query: 574 GMNLLLQSMFAVVVKGHWNHLLKPKISSSLTSKSIHQILFRLSFYCSGPSLSWAFFQWVE 633
           G    + S+ AVVVKGHWN++LKPKI SSL+S +IHQ+L +LS +  GPS SWAFF+WV+
Sbjct: 9   GETQFIHSLCAVVVKGHWNNILKPKIGSSLSSANIHQVLLQLSLHGYGPSPSWAFFKWVQ 68

Query: 634 LIPDYKHSLQSSWPM 693
            IP YKHSLQ  W M
Sbjct: 69  SIPTYKHSLQCCWTM 83

Query: 694 753
           
Sbjct: 129 83

Query: 754 799
           
Sbjct: 189 83

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
PP404_ARATH2.9e-1244.32Pentatricopeptide repeat-containing protein At5g38730 OS=Arabidopsis thaliana GN... [more]
Match NameE-valueIdentityDescription
A0A0A0KSX6_CUCSA4.6e-3394.59Uncharacterized protein OS=Cucumis sativus GN=Csa_5G289620 PE=4 SV=1[more]
M5W6W2_PRUPE1.4e-1861.33Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016546mg PE=4 SV=1[more]
A0A061EI73_THECC2.1e-1757.97Tetratricopeptide repeat (TPR)-like superfamily protein OS=Theobroma cacao GN=TC... [more]
B9T3S4_RICCO1.0e-1658.33Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCO... [more]
A0A0D2RK75_GOSRA4.3e-1555.71Uncharacterized protein OS=Gossypium raimondii GN=B456_005G232200 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G38730.11.6e-1344.32 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
Match NameE-valueIdentityDescription
gi|659130537|ref|XP_008465224.1|6.0e-3497.30PREDICTED: pentatricopeptide repeat-containing protein At5g38730 [Cucumis melo][more]
gi|449445409|ref|XP_004140465.1|6.6e-3394.59PREDICTED: pentatricopeptide repeat-containing protein At5g38730 [Cucumis sativu... [more]
gi|645219075|ref|XP_008233899.1|2.1e-1862.67PREDICTED: pentatricopeptide repeat-containing protein At5g38730 [Prunus mume][more]
gi|470103572|ref|XP_004288209.1|2.1e-1861.97PREDICTED: pentatricopeptide repeat-containing protein At5g38730 [Fragaria vesca... [more]
gi|595841665|ref|XP_007208255.1|2.1e-1861.33hypothetical protein PRUPE_ppa016546mg [Prunus persica][more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
MELO3C026797MELO3C026797gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
PEa0013F24PEa0013F24EST