MU63201 (transcribed_cluster) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MU63201
Type	transcribed_cluster
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Blue copper protein
Location	chr1 : 33252852 .. 33253387 (-)
Sequence length	360

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

GTCAAGAATTAATTCACAAATATTGGTGTGGGTTCAACTCTCCTTTCCCACCCATTAACCCTTATAAATGTATACACCAGCTTTCTTTCAACAAAATATTTTTGGTTTTTATTCATTTGAAAAATAAGAAAAATGGGTGGAGGAATTATTGGTTTAGTTTTGGGTTTAATTGCTGTGGTTTTGATTCACCAAGCCACCGCTCAGACGGTTCGTGTAGTCGGAGACTCCACCGGTTGGACGGTTCCGAAGGGCGGTGCTGCTTTCTATTCCGAGTGGGCTTCTAAATTCAACTTCTCCATTGGCGACTATCTAACGTTTAACTTTGGGACGAACGTGCACAGGGTCCAAAAAGTCCCAAAA

Library


Library category	ESTs
melon CM-PEa library	1

Homology

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BLAST of MU63201 vs. Swiss-Prot
Match: CPC_CUCSA (Cucumber peeling cupredoxin OS=Cucumis sativus PE=1 SV=3)

HSP 1 Score: 56.6 bits (135), Expect = 2.2e-07
Identity = 25/50 (50.00%), Postives = 31/50 (62.00%), Query Frame = 1


Query: 205 TVRVVGDSTGWTVPKGGAAFYSEWASKFNFSIGDYLTFNFGTNVHRVQKV 264
           TV +VGD+TGW+VP     FYS+WA+   F +GD L FNF  N H V ++
Sbjct: 3   TVHIVGDNTGWSVPSS-PNFYSQWAAGKTFRVGDSLQFNFPANAHNVHEM 51

Query: 265  324
           
Sbjct: 63   51

Query: 325  355
           
Sbjct: 123  51

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BLAST of MU63201 vs. TrEMBL
Match: A0A0A0KA53_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G432490 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 2.5e-23
Identity = 53/58 (91.38%), Postives = 55/58 (94.83%), Query Frame = 1


Query: 187 HQATAQTVRVVGDSTGWTVPKGGAAFYSEWASKFNFSIGDYLTFNFGTNVHRVQKVPK 246
           HQATAQTVRVVGDSTGWTVP  GAAFYSEWASKFNF+IGDYLTFNFGTN+H VQKVPK
Sbjct: 19  HQATAQTVRVVGDSTGWTVPMNGAAFYSEWASKFNFAIGDYLTFNFGTNMHSVQKVPK 76

Query: 247  306
           
Sbjct: 79   76

Query: 307  361
           
Sbjct: 139  76

[Close]

BLAST of MU63201 vs. TrEMBL
Match: A0A0A0KBU0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G432480 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 6.1e-17
Identity = 43/58 (74.14%), Postives = 49/58 (84.48%), Query Frame = 1


Query: 187 HQATAQTVRVVGDSTGWTVPKGGAAFYSEWASKFNFSIGDYLTFNFGTNVHRVQKVPK 246
           H ATAQT+ VVGDS GWTVP+GGAAFYS+WAS+ NFS+GD LTFNF TN+H V KV K
Sbjct: 18  HHATAQTIHVVGDSDGWTVPQGGAAFYSDWASRNNFSVGDSLTFNFRTNMHDVLKVTK 75

Query: 247  306
           
Sbjct: 78   75

Query: 307  361
           
Sbjct: 138  75

[Close]

BLAST of MU63201 vs. TrEMBL
Match: D1MWY8_CITLA (Blue copper protein OS=Citrullus lanatus subsp. vulgaris GN=CitBC PE=2 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 2.0e-12
Identity = 38/56 (67.86%), Postives = 42/56 (75.00%), Query Frame = 1


Query: 193 ATAQTVRVVGDSTGWTVPKGGAAFYSEWASKFNFSIGDYLTFNFGTNVHRVQKVPK 252
           ATAQTV VVGD+TGWTVP+ G AFYS WA+  NF +GD LTFNF T  H V KV K
Sbjct: 20  ATAQTVHVVGDNTGWTVPQDGPAFYSGWAANKNFRVGDSLTFNFQTGSHDVLKVSK 75

Query: 253  312
           
Sbjct: 80   75

Query: 313  361
           
Sbjct: 140  75

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BLAST of MU63201 vs. TrEMBL
Match: F6HXD5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0002g06890 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 2.6e-12
Identity = 36/58 (62.07%), Postives = 43/58 (74.14%), Query Frame = 1


Query: 187 HQATAQTVRVVGDSTGWTVPKGGAAFYSEWASKFNFSIGDYLTFNFGTNVHRVQKVPK 246
           H + AQTV VVGD+TGWTVP+GGAA Y+ WAS   F +GD L FNF TNVH V ++ K
Sbjct: 19  HYSAAQTVHVVGDNTGWTVPQGGAATYTSWASGKQFVVGDTLVFNFATNVHDVAELSK 76

Query: 247  306
           
Sbjct: 79   76

Query: 307  361
           
Sbjct: 139  76

[Close]


Query: 187 HQATAQTVRVVGDSTGWTVPKGGAAFYSEWASKFNFSIGDYLTFNFGTNVHRVQKVPK 246
           H + AQTV VVGD+TGWTVP+GGAA Y+ WAS   F +GD L FNF TNVH V ++ K
Sbjct: 168 HYSAAQTVHVVGDNTGWTVPQGGAATYTSWASGRQFVVGDTLVFNFATNVHDVAELSK 225

Query: 247  306
           
Sbjct: 228  225

Query: 307  361
           
Sbjct: 288  225

HSP 2 Score: 79.7 bits (195), Expect = 2.6e-12
Identity = 36/58 (62.07%), Postives = 43/58 (74.14%), Query Frame = 1


Query: 187 HQATAQTVRVVGDSTGWTVPKGGAAFYSEWASKFNFSIGDYLTFNFGTNVHRVQKVPK 246
           H + AQTV VVGD+TGWTVP+GGAA Y+ WAS   F +GD L FNF TNVH V ++ K
Sbjct: 19  HYSAAQTVHVVGDNTGWTVPQGGAATYTSWASGRQFVVGDTLVFNFATNVHDVAELSK 76

Query: 247  306
           
Sbjct: 79   76

Query: 307  361
           
Sbjct: 139  76

[Close]

BLAST of MU63201 vs. NCBI nr
Match: gi|778729055|ref|XP_011659524.1| (PREDICTED: cucumber peeling cupredoxin-like [Cucumis sativus])

HSP 1 Score: 116.7 bits (291), Expect = 2.8e-23
Identity = 53/58 (91.38%), Postives = 55/58 (94.83%), Query Frame = 1


Query: 187 HQATAQTVRVVGDSTGWTVPKGGAAFYSEWASKFNFSIGDYLTFNFGTNVHRVQKVPK 246
           HQATAQTVRVVGDSTGWTVP  GAAFYSEWASKFNF+IGDYLTFNFGTN+H VQKVPK
Sbjct: 19  HQATAQTVRVVGDSTGWTVPMNGAAFYSEWASKFNFAIGDYLTFNFGTNMHSVQKVPK 76

Query: 247  306
           
Sbjct: 79   76

Query: 307  361
           
Sbjct: 139  76

[Close]

BLAST of MU63201 vs. NCBI nr
Match: gi|659122398|ref|XP_008461122.1| (PREDICTED: cucumber peeling cupredoxin-like [Cucumis melo])

HSP 1 Score: 97.4 bits (241), Expect = 1.8e-17
Identity = 49/63 (77.78%), Postives = 51/63 (80.95%), Query Frame = 1


Query: 187 HQATAQTVRVVGDSTGWTVPKGGAAFYSEWASKFNFSIGDYLTFNFGTNVH-----RVQK 246
           HQATAQTVRVVGDSTGWTVPKGGAAFYSEWASKFNFSIGDYL F F   +       VQ+
Sbjct: 19  HQATAQTVRVVGDSTGWTVPKGGAAFYSEWASKFNFSIGDYLIFLFWQRLTLGRTCSVQE 78

Query: 247 VPK 306
           VPK
Sbjct: 79  VPK 81

Query: 307  361
           
Sbjct: 139  81

[Close]

BLAST of MU63201 vs. NCBI nr
Match: gi|449436615|ref|XP_004136088.1| (PREDICTED: cucumber peeling cupredoxin-like [Cucumis sativus])

HSP 1 Score: 95.5 bits (236), Expect = 6.7e-17
Identity = 43/58 (74.14%), Postives = 49/58 (84.48%), Query Frame = 1


Query: 187 HQATAQTVRVVGDSTGWTVPKGGAAFYSEWASKFNFSIGDYLTFNFGTNVHRVQKVPK 246
           H ATAQT+ VVGDS GWTVP+GGAAFYS+WAS+ NFS+GD LTFNF TN+H V KV K
Sbjct: 18  HHATAQTIHVVGDSDGWTVPQGGAAFYSDWASRNNFSVGDSLTFNFRTNMHDVLKVTK 75

Query: 247  306
           
Sbjct: 78   75

Query: 307  361
           
Sbjct: 138  75

[Close]

BLAST of MU63201 vs. NCBI nr
Match: gi|1009111271|ref|XP_015900196.1| (PREDICTED: cucumber peeling cupredoxin-like [Ziziphus jujuba])

HSP 1 Score: 81.6 bits (200), Expect = 1.0e-12
Identity = 36/58 (62.07%), Postives = 42/58 (72.41%), Query Frame = 1


Query: 187 HQATAQTVRVVGDSTGWTVPKGGAAFYSEWASKFNFSIGDYLTFNFGTNVHRVQKVPK 246
           H   AQTV VVGD++GWTVP+ GAAFY  WA+   F +GD LTFNF TN H V +VPK
Sbjct: 21  HYVAAQTVHVVGDASGWTVPQNGAAFYQTWAANKKFVVGDILTFNFRTNAHDVLQVPK 78

Query: 247  306
           
Sbjct: 81   78

Query: 307  361
           
Sbjct: 141  78

[Close]

BLAST of MU63201 vs. NCBI nr
Match: gi|1009111283|ref|XP_015900271.1| (PREDICTED: cucumber peeling cupredoxin-like [Ziziphus jujuba])

HSP 1 Score: 81.6 bits (200), Expect = 1.0e-12
Identity = 36/58 (62.07%), Postives = 42/58 (72.41%), Query Frame = 1


Query: 187 HQATAQTVRVVGDSTGWTVPKGGAAFYSEWASKFNFSIGDYLTFNFGTNVHRVQKVPK 246
           H   AQTV VVGD++GWTVP+ GAAFY  WA+   F +GD LTFNF TN H V +VPK
Sbjct: 21  HYVAAQTVHVVGDASGWTVPQNGAAFYQTWAANKKFVVGDILTFNFRTNAHDVLQVPK 78

Query: 247  306
           
Sbjct: 81   78

Query: 307  361
           
Sbjct: 141  78

The following BLAST results are available for this feature:

BLAST of MU63201 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CPC_CUCSA	2.2e-07	50.00	Cucumber peeling cupredoxin OS=Cucumis sativus PE=1 SV=3	[more]

BLAST of MU63201 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KA53_CUCSA	2.5e-23	91.38	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G432490 PE=4 SV=1	[more]
A0A0A0KBU0_CUCSA	6.1e-17	74.14	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G432480 PE=4 SV=1	[more]
D1MWY8_CITLA	2.0e-12	67.86	Blue copper protein OS=Citrullus lanatus subsp. vulgaris GN=CitBC PE=2 SV=1	[more]
F6HXD5_VITVI	2.6e-12	62.07	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0002g06890 PE=4 SV=...	[more]
F6HXD5_VITVI	2.6e-12	62.07	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0002g06890 PE=4 SV=...	[more]

BLAST of MU63201 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778729055\|ref\|XP_011659524.1\|	2.8e-23	91.38	PREDICTED: cucumber peeling cupredoxin-like [Cucumis sativus]	[more]
gi\|659122398\|ref\|XP_008461122.1\|	1.8e-17	77.78	PREDICTED: cucumber peeling cupredoxin-like [Cucumis melo]	[more]
gi\|449436615\|ref\|XP_004136088.1\|	6.7e-17	74.14	PREDICTED: cucumber peeling cupredoxin-like [Cucumis sativus]	[more]
gi\|1009111271\|ref\|XP_015900196.1\|	1.0e-12	62.07	PREDICTED: cucumber peeling cupredoxin-like [Ziziphus jujuba]	[more]
gi\|1009111283\|ref\|XP_015900271.1\|	1.0e-12	62.07	PREDICTED: cucumber peeling cupredoxin-like [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR003245	Phytocyanin_dom
IPR008972	Cupredoxin

Vocabulary: **Molecular Function**
Term	Definition
GO:0009055	electron carrier activity

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0009055	electron carrier activity

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C023423	MELO3C023423	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
PEa0009C10	PEa0009C10	EST

InterPro

Analysis Name: InterPro Annotations of melon unigene v4
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003245	Phytocyanin domain	PFAM	PF02298	Cu_bind_like	coord: 35..74 score: 1.
IPR003245	Phytocyanin domain	PROFILE	PS51485	PHYTOCYANIN	coord: 25..76 score: 16
IPR008972	Cupredoxin	GENE3D	G3DSA:2.60.40.420		coord: 25..74 score: 4.6
IPR008972	Cupredoxin	unknown	SSF49503	Cupredoxins	coord: 25..75 score: 5.84
None	No IPR available	PANTHER	PTHR33021	FAMILY NOT NAMED	coord: 5..76 score: 1.2
None	No IPR available	PANTHER	PTHR33021:SF5	SUBFAMILY NOT NAMED	coord: 5..76 score: 1.2