|
|
The following sequences are available for this feature:
transcribed_cluster sequence GACCAACAGAGGAAAAACAGATCTAATGATACAGATTCTGATGAATCGGTGGATAAGTTTGGAGAGAGAAGCAAAAATAGAAATTGGCGGAAATACAGATTTAATGATATAGATTCTGATGAATTGGTGGATGAGTTTGAAGAGAGAAGCAAAGATAGAGACCGTAGTAGGAGATCAAGACGGCCTAGAAAGCAGGATAGCAACTGGAAAACTGGTGTTCGAAATTCAGATCGTGATGACAATAAGAACATATCAAACGAAACTGATGAAGACTGGTCAAGTGGTGATGGGGACAAAGATGGGCATCAACATAAAAGAAGGAAAAGCAATGGTCGTGCTTCTGAGACTTCTAAGACAACAGATGTTTATCCAAGCAAGAGCGTAATTAAGGATCGTGATACACATGGAGTTTCTACTGAAAGAAACAAGGAAAGGCATCTTACATATGGTGGGAAACGCAAGAAACATTGGGACGAGGTTACCAAAGGCTCAGACGGCCACTTGGAAAAGAAGTCTAAGTTGAAGACTGATTACGAAAGCAAGAAGTCCAGCGCCGGAAAATCCAGTAGTCATTACTTTGAATCAAGTTCCATGGATGTAAACACAGAGGACGGTTACAGCATTGATTCCTTATATAATGATGTCATATTAGATGAGCGTTGGGAGCCGTCTTTTTCAGATCGATACATTGAGAGATTCAAAC
BLAST of MU62945 vs. TrEMBL
Match: A0A0A0L5G3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G111250 PE=4 SV=1) HSP 1 Score: 343.2 bits (879), Expect = 2.5e-91 Identity = 178/245 (72.65%), Postives = 185/245 (75.51%), Query Frame = 1
Query: 1 DQQRKNRSNDTDSDESVDKFGERSKNRN----------WRKYRFNDIDSDELVDEFEEXX 60
DQQ+KNRSNDTDSDESVDKFGERSK+RN WRK R ND DSDE VDEFEE
Sbjct: 584 DQQKKNRSNDTDSDESVDKFGERSKDRNRSREKEKYDRWRKNRSNDTDSDESVDEFEERS 643
Query: 61 XXXXXXXXXXXXXXXXX-NWKTGVRNSDRDDNKNISNETDEDWSSGDGDKDGHQHKRRKS 120
NWKT RN DRDDNKN +NETDEDWSSGDGDKDGHQHKRRKS
Sbjct: 644 KDRDRSRRSSRRPRKQESNWKTDGRNVDRDDNKNAANETDEDWSSGDGDKDGHQHKRRKS 703
Query: 121 NGRASETSKTTDVYPSKSVIKDRDTHGVSTERNKERHLTYGGKRKKHWDEVTKGSDGHLE 180
N RASETS++TDVYPS SVIKDRDTH VS+ERNKER LTYGGK KKHWDEVTK SD HLE
Sbjct: 704 NSRASETSRSTDVYPSNSVIKDRDTHEVSSERNKERRLTYGGKPKKHWDEVTKDSDDHLE 763
Query: 181 KKSKLKTDYEXXXXXXXXXXXHYFESSSMDVNTEDGYSIDSLYNDVILDERWEPSFSDRY 240
KKS LKTDYE HYFESSS DVNTEDGYSIDSL+NDV LDERWEPSFSDR
Sbjct: 764 KKSNLKTDYESKKPSAGKSSSHYFESSSRDVNTEDGYSIDSLHNDV-LDERWEPSFSDRC 823
Query: 241 IERFK 300
IERFK
Sbjct: 824 IERFK 827
Query: 301 360
Sbjct: 884 827
Query: 361 420
Sbjct: 944 827
Query: 421 480
Sbjct: 1004 827
Query: 481 540
Sbjct: 1064 827
Query: 541 600
Sbjct: 1124 827
Query: 601 660
Sbjct: 1184 827
Query: 661 703
Sbjct: 1244 827
BLAST of MU62945 vs. NCBI nr
Match: gi|659102609|ref|XP_008452219.1| (PREDICTED: zinc finger CCCH domain-containing protein 5 [Cucumis melo]) HSP 1 Score: 389.0 bits (998), Expect = 5.7e-105 Identity = 201/234 (85.90%), Postives = 203/234 (86.75%), Query Frame = 1
Query: 1 DQQRKNRSNDTDSDESVDKFGERSKNRNWRKYRFNDIDSDELVDEFEEXXXXXXXXXXXX 60
D+QRKNRSNDTDSDESVDKFGERSKNRNWRKYRFNDIDSDELVDEFEE
Sbjct: 500 DRQRKNRSNDTDSDESVDKFGERSKNRNWRKYRFNDIDSDELVDEFEERSKDRDRSRRSR 559
Query: 61 XXXXXXXNWKTGVRNSDRDDNKNISNETDEDWSSGDGDKDGHQHKRRKSNGRASETSKTT 120
NWKTGVRNSDRDDNKNISNETDEDWSSGDGDKDGHQHKRRKSNGRASETSKTT
Sbjct: 560 RPRKQDSNWKTGVRNSDRDDNKNISNETDEDWSSGDGDKDGHQHKRRKSNGRASETSKTT 619
Query: 121 DVYPSKSVIKDRDTHGVSTERNKERHLTYGGKRKKHWDEVTKGSDGHLEKKSKLKTDYEX 180
DVYPSKSVIKDRDTHGVSTERNKERHLTYGGKRKKHWDEVTKGSD HLEKKSKLKTDYE
Sbjct: 620 DVYPSKSVIKDRDTHGVSTERNKERHLTYGGKRKKHWDEVTKGSDDHLEKKSKLKTDYES 679
Query: 181 XXXXXXXXXXHYFESSSMDVNTEDGYSIDSLYNDVILDERWEPSFSDRYIERFK 240
HYFESSSMDVNTEDGYSIDSLYNDV+LDERWEPSFSDRYIERFK
Sbjct: 680 KKSSAGKSSSHYFESSSMDVNTEDGYSIDSLYNDVVLDERWEPSFSDRYIERFK 733
Query: 241 300
Sbjct: 740 733
Query: 301 360
Sbjct: 800 733
Query: 361 420
Sbjct: 860 733
Query: 421 480
Sbjct: 920 733
Query: 481 540
Sbjct: 980 733
Query: 541 600
Sbjct: 1040 733
Query: 601 660
Sbjct: 1100 733
Query: 661 703
Sbjct: 1160 733
BLAST of MU62945 vs. NCBI nr
Match: gi|449432946|ref|XP_004134259.1| (PREDICTED: zinc finger CCCH domain-containing protein 5 [Cucumis sativus]) HSP 1 Score: 317.4 bits (812), Expect = 2.1e-83 Identity = 178/245 (72.65%), Postives = 185/245 (75.51%), Query Frame = 1
Query: 1 DQQRKNRSNDTDSDESVDKFGERSKNRN----------WRKYRFNDIDSDELVDEFEEXX 60
DQQ+KNRSNDTDSDESVDKFGERSK+RN WRK R ND DSDE VDEFEE
Sbjct: 493 DQQKKNRSNDTDSDESVDKFGERSKDRNRSREKEKYDRWRKNRSNDTDSDESVDEFEERS 552
Query: 61 XXXXXXXXXXXXXXXXX-NWKTGVRNSDRDDNKNISNETDEDWSSGDGDKDGHQHKRRKS 120
NWKT RN DRDDNKN +NETDEDWSSGDGDKDGHQHKRRKS
Sbjct: 553 KDRDRSRRSSRRPRKQESNWKTDGRNVDRDDNKNAANETDEDWSSGDGDKDGHQHKRRKS 612
Query: 121 NGRASETSKTTDVYPSKSVIKDRDTHGVSTERNKERHLTYGGKRKKHWDEVTKGSDGHLE 180
N RASETS++TDVYPS SVIKDRDTH VS+ERNKER LTYGGK KKHWDEVTK SD HLE
Sbjct: 613 NSRASETSRSTDVYPSNSVIKDRDTHEVSSERNKERRLTYGGKPKKHWDEVTKDSDDHLE 672
Query: 181 KKSKLKTDYEXXXXXXXXXXXHYFESSSMDVNTEDGYSIDSLYNDVILDERWEPSFSDRY 240
KKS LKTDYE HYFESSS DVNTEDGYSIDSL+NDV LDERWEPSFSDR
Sbjct: 673 KKSNLKTDYESKKPSAGKSSSHYFESSSRDVNTEDGYSIDSLHNDV-LDERWEPSFSDRC 732
Query: 241 IERFK 300
IERFK
Sbjct: 733 IERFK 736
Query: 301 360
Sbjct: 793 736
Query: 361 420
Sbjct: 853 736
Query: 421 480
Sbjct: 913 736
Query: 481 540
Sbjct: 973 736
Query: 541 600
Sbjct: 1033 736
Query: 601 660
Sbjct: 1093 736
Query: 661 703
Sbjct: 1153 736
BLAST of MU62945 vs. NCBI nr
Match: gi|700201146|gb|KGN56279.1| (hypothetical protein Csa_3G111250 [Cucumis sativus]) HSP 1 Score: 317.4 bits (812), Expect = 2.1e-83 Identity = 178/245 (72.65%), Postives = 185/245 (75.51%), Query Frame = 1
Query: 1 DQQRKNRSNDTDSDESVDKFGERSKNRN----------WRKYRFNDIDSDELVDEFEEXX 60
DQQ+KNRSNDTDSDESVDKFGERSK+RN WRK R ND DSDE VDEFEE
Sbjct: 584 DQQKKNRSNDTDSDESVDKFGERSKDRNRSREKEKYDRWRKNRSNDTDSDESVDEFEERS 643
Query: 61 XXXXXXXXXXXXXXXXX-NWKTGVRNSDRDDNKNISNETDEDWSSGDGDKDGHQHKRRKS 120
NWKT RN DRDDNKN +NETDEDWSSGDGDKDGHQHKRRKS
Sbjct: 644 KDRDRSRRSSRRPRKQESNWKTDGRNVDRDDNKNAANETDEDWSSGDGDKDGHQHKRRKS 703
Query: 121 NGRASETSKTTDVYPSKSVIKDRDTHGVSTERNKERHLTYGGKRKKHWDEVTKGSDGHLE 180
N RASETS++TDVYPS SVIKDRDTH VS+ERNKER LTYGGK KKHWDEVTK SD HLE
Sbjct: 704 NSRASETSRSTDVYPSNSVIKDRDTHEVSSERNKERRLTYGGKPKKHWDEVTKDSDDHLE 763
Query: 181 KKSKLKTDYEXXXXXXXXXXXHYFESSSMDVNTEDGYSIDSLYNDVILDERWEPSFSDRY 240
KKS LKTDYE HYFESSS DVNTEDGYSIDSL+NDV LDERWEPSFSDR
Sbjct: 764 KKSNLKTDYESKKPSAGKSSSHYFESSSRDVNTEDGYSIDSLHNDV-LDERWEPSFSDRC 823
Query: 241 IERFK 300
IERFK
Sbjct: 824 IERFK 827
Query: 301 360
Sbjct: 884 827
Query: 361 420
Sbjct: 944 827
Query: 421 480
Sbjct: 1004 827
Query: 481 540
Sbjct: 1064 827
Query: 541 600
Sbjct: 1124 827
Query: 601 660
Sbjct: 1184 827
Query: 661 703
Sbjct: 1244 827
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0L5G3_CUCSA | 2.5e-91 | 72.65 | Uncharacterized protein OS=Cucumis sativus GN=Csa_3G111250 PE=4 SV=1 | [more] |
This transcribed_cluster is associated with the following gene feature(s):
The following EST feature(s) are a part of this transcribed_cluster:
| Feature Name | Unique Name | Type |
|---|
| PEa0005D04 | PEa0005D04 | EST |
|
