MU62253 (transcribed_cluster) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MU62253
Type	transcribed_cluster
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	DNA-directed RNA polymerase I and III subunit RPAC2
Location	chr12 : 1254864 .. 1259802 (-)
Sequence length	753

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

GCCCAATCCCTTTAGCGCATTCAATCCCCCTTCGACAGTTCGACGTTCACATTTCGTAATCCCTTCGGCGATAAAATTCCGGCGACCTTTACATTCCGCCGGCGGCCTTTGCACATTTAGATCGTAAGTTCGACGGCACGATTCGCCTTTACACTTTCCAATCGCAAGTTCGACGGACTTCACATTCTGGGTTCTTCATCTTGTTTTGTCGGGTTCTTCATCTTGTTTTGTCCAAGCAATGGAACATGGATCCTTTACAGATGAGACCAAATCAACATTTTCTATGGCTGATGAAGATCATACACTTGCAAATGCTCTCAGACACACTTTGAATCAAGATCCAAGAGTGACATTCTGTGGGTACAGCATCCCTCATCCTTCAGATAATCGAGTTAATATTAGAGTCCAGACAACAGTGATCTGCAGTTGAAAGTAGACAAAGCTATTATTGATTACTAGGGAAAAGCAAAGCACATGGGAAAATGGTGATCCTGCTAGAGAAGTTTTGAAAGATGCTTGTCAGAACTTGATGGTGGTGTGTCAGCATGTGAGGAACACATTTGACAAGGCTGTGCTTGATTTCAATCTCACCAAAGCAAAAGAAGAACCTGAGGGAGACATTAATATCGAATAGAATGGGACCTTTGTTTTTTCTTTGCCTTGTAATTTTACCCTTTTTTTTTTTGTTAGTTTACAGTTTATTGAGATGGGTTTGTTAGAAACAGATTAATTCCATTGAATTTTGCTTGCGTT

Library


Library category	ESTs
melon PFTP2 library	1

Homology

[Close]

BLAST of MU62253 vs. Swiss-Prot
Match: RPAC2_XENLA (DNA-directed RNA polymerases I and III subunit RPAC2 OS=Xenopus laevis GN=polr1d PE=3 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 2.9e-14
Identity = 41/112 (36.61%), Postives = 59/112 (52.68%), Query Frame = 2


Query: 260 DETKSTFSMADEDHTLANALRHTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTVICS*K*T 319
           +E+  TF + +EDHTL N+LR+ + ++P V FCGYSI HPS+ ++N R+QT         
Sbjct: 20  EESCVTFVLHEEDHTLGNSLRYMVMKNPEVEFCGYSITHPSETKINFRIQT--------- 79

Query: 320 KLLLITREKQSTWENGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTK 379
                         NG PA E  +     L+ VCQHV NTF+ ++ ++   K
Sbjct: 80  -------------RNGIPAVEPFRRGLNELVDVCQHVLNTFETSIKEYKEQK 109

Query: 380  439
           
Sbjct: 140  109

Query: 440  499
           
Sbjct: 200  109

Query: 500  559
           
Sbjct: 260  109

Query: 560  596
           
Sbjct: 320  109

[Close]

BLAST of MU62253 vs. Swiss-Prot
Match: RPAC2_DANRE (DNA-directed RNA polymerases I and III subunit RPAC2 OS=Danio rerio GN=polr1d PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 5.5e-13
Identity = 43/116 (37.07%), Postives = 60/116 (51.72%), Query Frame = 2


Query: 260 DETKSTFSMADEDHTLANALRHTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTVICS*K*T 319
           DE   TF + +EDHTL N+LR+ + +   V FCGYSI HPS++++N R+QT         
Sbjct: 19  DEGCVTFVLNEEDHTLGNSLRYMIMKSQDVEFCGYSITHPSESKINFRIQT--------- 78

Query: 320 KLLLITREKQSTWENGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKAKEE 379
                         +G PA E L++   NL  VC+HV  TF+  + +F   K +EE
Sbjct: 79  -------------RDGVPASEPLRNGLNNLTDVCKHVLQTFEARMKEF---KEQEE 109

Query: 380  439
           
Sbjct: 139  109

Query: 440  499
           
Sbjct: 199  109

Query: 500  559
           
Sbjct: 259  109

Query: 560  608
           
Sbjct: 319  109

[Close]

BLAST of MU62253 vs. Swiss-Prot
Match: RPAC2_MOUSE (DNA-directed RNA polymerases I and III subunit RPAC2 OS=Mus musculus GN=Polr1d PE=1 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 9.3e-13
Identity = 42/125 (33.60%), Postives = 61/125 (48.80%), Query Frame = 2


Query: 239 MEHGSFTDETKSTFSMADEDHTLANALRHTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTV 298
           M   + TD    TF + +EDHTL N LR+ + ++P V FCGY+  HPS++++N+R+QT  
Sbjct: 29  MVQAAGTDRQCVTFVLHEEDHTLGNCLRYIIMKNPEVEFCGYTTTHPSESKINLRIQT-- 88

Query: 299 ICS*K*TKLLLITREKQSTWENGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKA 358
                                   PA E  +     L+ VCQHV   F+ ++ D+   KA
Sbjct: 89  --------------------RGALPAVEPFQKGLNELLNVCQHVLVKFEASIKDYKAKKA 131

Query: 359 -KEEP 418
            K+EP
Sbjct: 149 SKKEP 131

Query: 419  478
           
Sbjct: 209  131

Query: 479  538
           
Sbjct: 269  131

Query: 539  598
           
Sbjct: 329  131

Query: 599  611
           
Sbjct: 389  131

[Close]

BLAST of MU62253 vs. Swiss-Prot
Match: RPAC2_HUMAN (DNA-directed RNA polymerases I and III subunit RPAC2 OS=Homo sapiens GN=POLR1D PE=1 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 3.5e-12
Identity = 40/120 (33.33%), Postives = 59/120 (49.17%), Query Frame = 2


Query: 239 MEHGSFTDETKSTFSMADEDHTLANALRHTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTV 298
           M   + TD    TF + +EDHTL N+LR+ + ++P V FCGY+  HPS++++N+R+QT  
Sbjct: 29  MVQAAGTDRHCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQT-- 88

Query: 299 ICS*K*TKLLLITREKQSTWENGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKA 358
                                   PA E  +     LM VCQHV + F+ ++ D+   KA
Sbjct: 89  --------------------RGTLPAVEPFQRGLNELMNVCQHVLDKFEASIKDYKDQKA 126

Query: 359  418
           
Sbjct: 149  126

Query: 419  478
           
Sbjct: 209  126

Query: 479  538
           
Sbjct: 269  126

Query: 539  598
           
Sbjct: 329  126

[Close]

BLAST of MU62253 vs. Swiss-Prot
Match: RPAC2_YEAST (DNA-directed RNA polymerases I and III subunit RPAC2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPC19 PE=1 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 4.6e-12
Identity = 30/61 (49.18%), Postives = 43/61 (70.49%), Query Frame = 2


Query: 230 VQAMEHGSFTDETKSTFSMADEDHTLANALRHTLNQDPRVTFCGYSIPHPSDNRVNIRVQ 289
           ++ +   +  D T ++F + +EDHTL NALR+ + ++P V FCGYSIPHPS+N +NIR+Q
Sbjct: 47  IKLLTQATSEDGTSASFQIVEEDHTLGNALRYVIMKNPDVEFCGYSIPHPSENLLNIRIQ 106

Query: 290 T 349
           T
Sbjct: 107 T 107

Query: 350  409
           
Sbjct: 167  107

Query: 410  413
           
Sbjct: 227  107

[Close]

BLAST of MU62253 vs. TrEMBL
Match: A0A0A0LV21_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G527910 PE=4 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 1.6e-48
Identity = 103/131 (78.63%), Postives = 105/131 (80.15%), Query Frame = 2


Query: 239 MEHGSFTDETKSTFSMADEDHTLANALRHTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTV 298
           MEHGSFTDETKSTFSMADEDHTLANALR TLNQDPRVTFCGYSIPHPSDNRVNIRVQTT 
Sbjct: 1   MEHGSFTDETKSTFSMADEDHTLANALRCTLNQDPRVTFCGYSIPHPSDNRVNIRVQTT- 60

Query: 299 ICS*K*TKLLLITREKQSTWENGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKA 358
                                 GDPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTK 
Sbjct: 61  ----------------------GDPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKP 108

Query: 359 KEEPEGDINIE 418
           KE+P GDINI+
Sbjct: 121 KEKPVGDINIK 108

Query: 419  478
           
Sbjct: 181  108

Query: 479  538
           
Sbjct: 241  108

Query: 539  598
           
Sbjct: 301  108

Query: 599  632
           
Sbjct: 361  108

[Close]

BLAST of MU62253 vs. TrEMBL
Match: A0A0A0LUT5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G095010 PE=4 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 3.0e-42
Identity = 95/131 (72.52%), Postives = 98/131 (74.81%), Query Frame = 2


Query: 239 MEHGSFTDETKSTFSMADEDHTLANALRHTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTV 298
           MEHGSFTDETKSTFS+ADEDHTLAN LR+TLNQDPRVTFCGYSIPHPSDNRVNIRVQTT 
Sbjct: 1   MEHGSFTDETKSTFSVADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTT- 60

Query: 299 ICS*K*TKLLLITREKQSTWENGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKA 358
                                 GDPAREVLKDACQNLMVVCQHVRNTFDKAVLD  LT  
Sbjct: 61  ----------------------GDPAREVLKDACQNLMVVCQHVRNTFDKAVLDVKLT-- 104

Query: 359 KEEPEGDINIE 418
              P  DINI+
Sbjct: 121 --NPVRDINIK 104

Query: 419  478
           
Sbjct: 181  104

Query: 479  538
           
Sbjct: 241  104

Query: 539  598
           
Sbjct: 301  104

Query: 599  632
           
Sbjct: 361  104

[Close]

BLAST of MU62253 vs. TrEMBL
Match: K7MV80_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_18G281100 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 2.0e-38
Identity = 83/132 (62.88%), Postives = 101/132 (76.52%), Query Frame = 2


Query: 236 AMEHGSFTDETKSTFSMADEDHTLANALRHTLNQDPRVTFCGYSIPHPSDNRVNIRVQTT 295
           AMEHGS+TD++KSTFS+ DEDHT ANA+R TLNQDPRV+FCGYSIPHPSDNRVNIRVQTT
Sbjct: 28  AMEHGSYTDQSKSTFSLVDEDHTFANAVRFTLNQDPRVSFCGYSIPHPSDNRVNIRVQTT 87

Query: 296 VICS*K*TKLLLITREKQSTWENGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTK 355
                                  GDP+REVLKDACQ+LM++CQHVR+TFDKAV DF ++K
Sbjct: 88  -----------------------GDPSREVLKDACQDLMLMCQHVRSTFDKAVSDFKISK 135

Query: 356 AKEEPEGDINIE 415
           A++  E D+++E
Sbjct: 148 ARKNNE-DMDVE 135

Query: 416  475
           
Sbjct: 208  135

Query: 476  535
           
Sbjct: 268  135

Query: 536  595
           
Sbjct: 328  135

Query: 596  632
           
Sbjct: 388  135

[Close]

BLAST of MU62253 vs. TrEMBL
Match: A0A0B2PXJ1_GLYSO (DNA-directed RNA polymerases I and III subunit RPAC2 OS=Glycine soja GN=glysoja_016099 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 2.0e-38
Identity = 83/132 (62.88%), Postives = 101/132 (76.52%), Query Frame = 2


Query: 236 AMEHGSFTDETKSTFSMADEDHTLANALRHTLNQDPRVTFCGYSIPHPSDNRVNIRVQTT 295
           AMEHGS+TD++KSTFS+ DEDHT ANA+R TLNQDPRV+FCGYSIPHPSDNRVNIRVQTT
Sbjct: 258 AMEHGSYTDQSKSTFSLVDEDHTFANAVRFTLNQDPRVSFCGYSIPHPSDNRVNIRVQTT 317

Query: 296 VICS*K*TKLLLITREKQSTWENGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTK 355
                                  GDP+REVLKDACQ+LM++CQHVR+TFDKAV DF ++K
Sbjct: 318 -----------------------GDPSREVLKDACQDLMLMCQHVRSTFDKAVSDFKISK 365

Query: 356 AKEEPEGDINIE 415
           A++  E D+++E
Sbjct: 378 ARKNNE-DMDVE 365

Query: 416  475
           
Sbjct: 438  365

Query: 476  535
           
Sbjct: 498  365

Query: 536  595
           
Sbjct: 558  365

Query: 596  632
           
Sbjct: 618  365

[Close]

BLAST of MU62253 vs. TrEMBL
Match: C6T2I2_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 5.8e-38
Identity = 82/131 (62.60%), Postives = 100/131 (76.34%), Query Frame = 2


Query: 239 MEHGSFTDETKSTFSMADEDHTLANALRHTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTV 298
           MEHGS+TD++KSTFS+ DEDHT ANA+R TLNQDPRV+FCGYSIPHPSDNRVNIRVQTT 
Sbjct: 1   MEHGSYTDQSKSTFSLVDEDHTFANAVRFTLNQDPRVSFCGYSIPHPSDNRVNIRVQTT- 60

Query: 299 ICS*K*TKLLLITREKQSTWENGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKA 358
                                 GDP+REVLKDACQ+LM++CQHVR+TFDKAV DF ++KA
Sbjct: 61  ----------------------GDPSREVLKDACQDLMLMCQHVRSTFDKAVSDFKISKA 107

Query: 359 KEEPEGDINIE 418
           ++  E D+++E
Sbjct: 121 RKNNE-DMDVE 107

Query: 419  478
           
Sbjct: 181  107

Query: 479  538
           
Sbjct: 241  107

Query: 539  598
           
Sbjct: 301  107

Query: 599  632
           
Sbjct: 361  107

[Close]

BLAST of MU62253 vs. TAIR10
Match: AT2G29540.3 (AT2G29540.3 RNApolymerase 14 kDa subunit)

HSP 1 Score: 76.3 bits (186), Expect = 3.1e-14
Identity = 45/92 (48.91%), Postives = 51/92 (55.43%), Query Frame = 2


Query: 341 PRVTFCGYSIPHPSDNRVNIRVQTTVICS*K*TKLLLITREKQSTWENGDPAREVLKDAC 400
           PRVT   Y+IPHPS  +VNIRVQTT                       GDPAREV KDAC
Sbjct: 52  PRVTVAAYTIPHPSLEQVNIRVQTT-----------------------GDPAREVFKDAC 111

Query: 401 QNLMVVCQHVRNTFDKAVLDF-NLTKAKEEPE 460
           Q LM + +HVR+ FDKAV ++ +  K KEE E
Sbjct: 112 QELMQMNRHVRSVFDKAVAEYKDEQKRKEEAE 120

Query: 461  520
           
Sbjct: 172  120

Query: 521  580
           
Sbjct: 232  120

Query: 581  614
           
Sbjct: 292  120

[Close]

BLAST of MU62253 vs. NCBI nr
Match: gi|659115158|ref|XP_008457416.1| (PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2 [Cucumis melo])

HSP 1 Score: 213.4 bits (542), Expect = 4.6e-52
Identity = 107/131 (81.68%), Postives = 108/131 (82.44%), Query Frame = 2


Query: 239 MEHGSFTDETKSTFSMADEDHTLANALRHTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTV 298
           MEHGSFTDETKSTFSMADEDHTLANALR+TLNQDPRVTFCGYSIPHPSDNRVNIRVQTT 
Sbjct: 1   MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTT- 60

Query: 299 ICS*K*TKLLLITREKQSTWENGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKA 358
                                 GDPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKA
Sbjct: 61  ----------------------GDPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKA 108

Query: 359 KEEPEGDINIE 418
           KEEPEGDINIE
Sbjct: 121 KEEPEGDINIE 108

Query: 419  478
           
Sbjct: 181  108

Query: 479  538
           
Sbjct: 241  108

Query: 539  598
           
Sbjct: 301  108

Query: 599  632
           
Sbjct: 361  108

[Close]

BLAST of MU62253 vs. NCBI nr
Match: gi|449455052|ref|XP_004145267.1| (PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2 [Cucumis sativus])

HSP 1 Score: 203.8 bits (517), Expect = 3.6e-49
Identity = 103/131 (78.63%), Postives = 105/131 (80.15%), Query Frame = 2


Query: 239 MEHGSFTDETKSTFSMADEDHTLANALRHTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTV 298
           MEHGSFTDETKSTFSMADEDHTLANALR TLNQDPRVTFCGYSIPHPSDNRVNIRVQTT 
Sbjct: 1   MEHGSFTDETKSTFSMADEDHTLANALRCTLNQDPRVTFCGYSIPHPSDNRVNIRVQTT- 60

Query: 299 ICS*K*TKLLLITREKQSTWENGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKA 358
                                 GDPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTK 
Sbjct: 61  ----------------------GDPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKP 108

Query: 359 KEEPEGDINIE 418
           KE+P GDINI+
Sbjct: 121 KEKPVGDINIK 108

Query: 419  478
           
Sbjct: 181  108

Query: 479  538
           
Sbjct: 241  108

Query: 539  598
           
Sbjct: 301  108

Query: 599  632
           
Sbjct: 361  108

[Close]

BLAST of MU62253 vs. NCBI nr
Match: gi|778659017|ref|XP_004147276.2| (PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2 [Cucumis sativus])

HSP 1 Score: 182.6 bits (462), Expect = 8.6e-43
Identity = 95/131 (72.52%), Postives = 98/131 (74.81%), Query Frame = 2


Query: 239 MEHGSFTDETKSTFSMADEDHTLANALRHTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTV 298
           MEHGSFTDETKSTFS+ADEDHTLAN LR+TLNQDPRVTFCGYSIPHPSDNRVNIRVQTT 
Sbjct: 1   MEHGSFTDETKSTFSVADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTT- 60

Query: 299 ICS*K*TKLLLITREKQSTWENGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKA 358
                                 GDPAREVLKDACQNLMVVCQHVRNTFDKAVLD  LT  
Sbjct: 61  ----------------------GDPAREVLKDACQNLMVVCQHVRNTFDKAVLDVKLT-- 104

Query: 359 KEEPEGDINIE 418
              P  DINI+
Sbjct: 121 --NPVRDINIK 104

Query: 419  478
           
Sbjct: 181  104

Query: 479  538
           
Sbjct: 241  104

Query: 539  598
           
Sbjct: 301  104

Query: 599  632
           
Sbjct: 361  104

[Close]

BLAST of MU62253 vs. NCBI nr
Match: gi|947051972|gb|KRH01501.1| (hypothetical protein GLYMA_18G281100 [Glycine max])

HSP 1 Score: 169.9 bits (429), Expect = 5.8e-39
Identity = 83/132 (62.88%), Postives = 101/132 (76.52%), Query Frame = 2


Query: 236 AMEHGSFTDETKSTFSMADEDHTLANALRHTLNQDPRVTFCGYSIPHPSDNRVNIRVQTT 295
           AMEHGS+TD++KSTFS+ DEDHT ANA+R TLNQDPRV+FCGYSIPHPSDNRVNIRVQTT
Sbjct: 28  AMEHGSYTDQSKSTFSLVDEDHTFANAVRFTLNQDPRVSFCGYSIPHPSDNRVNIRVQTT 87

Query: 296 VICS*K*TKLLLITREKQSTWENGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTK 355
                                  GDP+REVLKDACQ+LM++CQHVR+TFDKAV DF ++K
Sbjct: 88  -----------------------GDPSREVLKDACQDLMLMCQHVRSTFDKAVSDFKISK 135

Query: 356 AKEEPEGDINIE 415
           A++  E D+++E
Sbjct: 148 ARKNNE-DMDVE 135

Query: 416  475
           
Sbjct: 208  135

Query: 476  535
           
Sbjct: 268  135

Query: 536  595
           
Sbjct: 328  135

Query: 596  632
           
Sbjct: 388  135

[Close]

BLAST of MU62253 vs. NCBI nr
Match: gi|734354930|gb|KHN13815.1| (DNA-directed RNA polymerases I and III subunit RPAC2 [Glycine soja])

HSP 1 Score: 169.9 bits (429), Expect = 5.8e-39
Identity = 83/132 (62.88%), Postives = 101/132 (76.52%), Query Frame = 2


Query: 236 AMEHGSFTDETKSTFSMADEDHTLANALRHTLNQDPRVTFCGYSIPHPSDNRVNIRVQTT 295
           AMEHGS+TD++KSTFS+ DEDHT ANA+R TLNQDPRV+FCGYSIPHPSDNRVNIRVQTT
Sbjct: 258 AMEHGSYTDQSKSTFSLVDEDHTFANAVRFTLNQDPRVSFCGYSIPHPSDNRVNIRVQTT 317

Query: 296 VICS*K*TKLLLITREKQSTWENGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTK 355
                                  GDP+REVLKDACQ+LM++CQHVR+TFDKAV DF ++K
Sbjct: 318 -----------------------GDPSREVLKDACQDLMLMCQHVRSTFDKAVSDFKISK 365

Query: 356 AKEEPEGDINIE 415
           A++  E D+++E
Sbjct: 378 ARKNNE-DMDVE 365

Query: 416  475
           
Sbjct: 438  365

Query: 476  535
           
Sbjct: 498  365

Query: 536  595
           
Sbjct: 558  365

Query: 596  632
           
Sbjct: 618  365

The following BLAST results are available for this feature:

BLAST of MU62253 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RPAC2_XENLA	2.9e-14	36.61	DNA-directed RNA polymerases I and III subunit RPAC2 OS=Xenopus laevis GN=polr1d...	[more]
RPAC2_DANRE	5.5e-13	37.07	DNA-directed RNA polymerases I and III subunit RPAC2 OS=Danio rerio GN=polr1d PE...	[more]
RPAC2_MOUSE	9.3e-13	33.60	DNA-directed RNA polymerases I and III subunit RPAC2 OS=Mus musculus GN=Polr1d P...	[more]
RPAC2_HUMAN	3.5e-12	33.33	DNA-directed RNA polymerases I and III subunit RPAC2 OS=Homo sapiens GN=POLR1D P...	[more]
RPAC2_YEAST	4.6e-12	49.18	DNA-directed RNA polymerases I and III subunit RPAC2 OS=Saccharomyces cerevisiae...	[more]

BLAST of MU62253 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LV21_CUCSA	1.6e-48	78.63	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G527910 PE=4 SV=1	[more]
A0A0A0LUT5_CUCSA	3.0e-42	72.52	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G095010 PE=4 SV=1	[more]
K7MV80_SOYBN	2.0e-38	62.88	Uncharacterized protein OS=Glycine max GN=GLYMA_18G281100 PE=4 SV=1	[more]
A0A0B2PXJ1_GLYSO	2.0e-38	62.88	DNA-directed RNA polymerases I and III subunit RPAC2 OS=Glycine soja GN=glysoja_...	[more]
C6T2I2_SOYBN	5.8e-38	62.60	Putative uncharacterized protein OS=Glycine max PE=2 SV=1	[more]

BLAST of MU62253 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G29540.3	3.1e-14	48.91	RNApolymerase 14 kDa subunit	[more]

BLAST of MU62253 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659115158\|ref\|XP_008457416.1\|	4.6e-52	81.68	PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2 [Cucumis melo]	[more]
gi\|449455052\|ref\|XP_004145267.1\|	3.6e-49	78.63	PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2 [Cucumis sativus...	[more]
gi\|778659017\|ref\|XP_004147276.2\|	8.6e-43	72.52	PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2 [Cucumis sativus...	[more]
gi\|947051972\|gb\|KRH01501.1\|	5.8e-39	62.88	hypothetical protein GLYMA_18G281100 [Glycine max]	[more]
gi\|734354930\|gb\|KHN13815.1\|	5.8e-39	62.88	DNA-directed RNA polymerases I and III subunit RPAC2 [Glycine soja]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR008193	RNA_pol_Rpb11_13-16kDa_CS
IPR009025	RBP11-like_dimer

Vocabulary: **Biological Process**
Term	Definition
GO:0006351	transcription, DNA-templated

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0003899	DNA-directed RNA polymerase activity
GO:0046983	protein dimerization activity

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed RNA polymerase activity
molecular_function	GO:0046983	protein dimerization activity

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C020585	MELO3C020585	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
IA6YH23FM1	IA6YH23FM1	EST

InterPro

Analysis Name: InterPro Annotations of melon unigene v4
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008193	DNA-directed RNA polymerase Rpb11, 13-16kDa subunit, conserved site	PROSITE	PS01154	RNA_POL_L_13KD	coord: 16..47 scor
IPR009025	DNA-directed RNA polymerase, RBP11-like dimerisation domain	unknown	SSF55257	RBP11-like subunits of RNA polymerase	coord: 8..115 score: 5.76
None	No IPR available	GENE3D	G3DSA:3.30.1360.10		coord: 8..120 score: 9.6
None	No IPR available	PANTHER	PTHR13946	DNA-DIRECTED RNA POLYMERASE I,II,III	coord: 85..127 score: 5.4E-47coord: 1..62 score: 5.4
None	No IPR available	PANTHER	PTHR13946:SF28	DNA-DIRECTED RNA POLYMERASES I AND III SUBUNIT RPAC2	coord: 85..127 score: 5.4E-47coord: 1..62 score: 5.4
None	No IPR available	PFAM	PF13656	RNA_pol_L_2	coord: 12..106 score: 1.4