MU62126 (transcribed_cluster) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MU62126
Type	transcribed_cluster
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Unknown protein
Location	chr11 : 29086547 .. 29087837 (+)
Sequence length	539

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

GGCATTATAATCAAGATCTTGTAATTCTAGATTTAGCGTTACCATAACACAAAATTTTAGAAAGGAGTAAGTATTGACAAGAACCAAATGCAATCATGCATATTTTCCTTGAGTTTCAAAATTAGAAGACAGATCCCCAAGCTTGAAACACATGGGTCAGAGTTTTACATTATGATGACAAGTTCAAATGCTTTCTATCATATTTTGGAATTCAACAAAATCATGATCAAATATTGTTGTTGACCAGAGCCATTATTCTCCCTCATCTTACGACGAACGTTAGGGTTTTTTCTTCCTACAAGAGAGTTTTGATGCTCTTTGCAACAATCCTCATAATTTGCTTCTCAATAGCTGGATAAAGAGCGTACCTGAATTTGCTATCTTCACACATTGGTGCACCAATCTATCATTCTCCGGTTCCATCATGTGATGGACTCTTTTATCATGTTACATCGACCAGCAATTCTCCGAAAATCATCCAGATTTAACCTCCCATCTCCATCCTTGTCAAAGCAATCAATCATATCCCTTAATTCCAT

Library


Library category	ESTs
melon PFTP2 library	1

Homology

[Close]

BLAST of MU62126 vs. TrEMBL
Match: A0A0A0KDV1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G108450 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.1e-11
Identity = 35/38 (92.11%), Postives = 37/38 (97.37%), Query Frame = -1


Query: 426 MELRDMIDCFDKDGDGRLNLDDFRRIAGRCNMIKESIT 485
           +ELRDMIDCFD DGDG+LNLDDFRRIAGRCNMIKESIT
Sbjct: 249 IELRDMIDCFDNDGDGKLNLDDFRRIAGRCNMIKESIT 286

Query: 486  540
           
Sbjct: 309  286

[Close]

BLAST of MU62126 vs. TrEMBL
Match: B9MUX0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s05960g PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 8.5e-07
Identity = 27/35 (77.14%), Postives = 31/35 (88.57%), Query Frame = -1


Query: 432 ELRDMIDCFDKDGDGRLNLDDFRRIAGRCNMIKES 491
           EL DMI CFD DGDG+L+LDDFR+IAGRCNMI+ S
Sbjct: 233 ELADMIHCFDGDGDGKLSLDDFRKIAGRCNMIQSS 267

Query: 492  537
           
Sbjct: 293  267

[Close]

BLAST of MU62126 vs. TrEMBL
Match: V7ARA2_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_010G072500g PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 4.2e-06
Identity = 27/35 (77.14%), Postives = 30/35 (85.71%), Query Frame = -1


Query: 432 ELRDMIDCFDKDGDGRLNLDDFRRIAGRCNMIKES 491
           EL DMI CFD DGDG+L+LDDFR+I  RCNMIKES
Sbjct: 294 ELVDMIRCFDSDGDGKLSLDDFRKITIRCNMIKES 328

Query: 492  537
           
Sbjct: 354  328

[Close]

BLAST of MU62126 vs. TrEMBL
Match: A0A068UMG6_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00028889001 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 9.4e-06
Identity = 25/35 (71.43%), Postives = 31/35 (88.57%), Query Frame = -1


Query: 432 ELRDMIDCFDKDGDGRLNLDDFRRIAGRCNMIKES 491
           E+ DMI CFD DGDG+L+LDDFR+IAGRC+MI+ S
Sbjct: 252 EMADMIKCFDIDGDGKLSLDDFRKIAGRCSMIQAS 286

Query: 492  537
           
Sbjct: 312  286

[Close]

BLAST of MU62126 vs. TrEMBL
Match: A0A0D2QP81_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G089100 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 9.4e-06
Identity = 24/35 (68.57%), Postives = 29/35 (82.86%), Query Frame = -1


Query: 432 ELRDMIDCFDKDGDGRLNLDDFRRIAGRCNMIKES 491
           EL +MI CFD DGDG+LNLDDFR+I  RCNM++ S
Sbjct: 252 ELAEMIQCFDTDGDGKLNLDDFRKIVSRCNMLRTS 286

Query: 492  537
           
Sbjct: 312  286

[Close]

BLAST of MU62126 vs. TAIR10
Match: AT1G73440.1 (AT1G73440.1 calmodulin-related)

HSP 1 Score: 52.0 bits (123), Expect = 4.5e-07
Identity = 22/35 (62.86%), Postives = 26/35 (74.29%), Query Frame = -1


Query: 432 ELRDMIDCFDKDGDGRLNLDDFRRIAGRCNMIKES 491
           EL+DMI CFD D DG+L+LD+FR+I  RC M+K S
Sbjct: 220 ELQDMIRCFDMDKDGKLSLDEFRKIVSRCRMLKGS 254

Query: 492  537
           
Sbjct: 280  254

[Close]

BLAST of MU62126 vs. NCBI nr
Match: gi|659120420|ref|XP_008460184.1| (PREDICTED: uncharacterized protein LOC103499070 [Cucumis melo])

HSP 1 Score: 80.5 bits (197), Expect = 3.3e-12
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = -1


Query: 426 MELRDMIDCFDKDGDGRLNLDDFRRIAGRCNMIKESIT 485
           +ELRDMIDCFD DGDGRLNLDDFRRIAGRCNMIKESIT
Sbjct: 244 IELRDMIDCFDNDGDGRLNLDDFRRIAGRCNMIKESIT 281

Query: 486  540
           
Sbjct: 304  281

[Close]

BLAST of MU62126 vs. NCBI nr
Match: gi|449445469|ref|XP_004140495.1| (PREDICTED: uncharacterized protein LOC101206207 [Cucumis sativus])

HSP 1 Score: 79.3 bits (194), Expect = 7.4e-12
Identity = 35/38 (92.11%), Postives = 37/38 (97.37%), Query Frame = -1


Query: 426 MELRDMIDCFDKDGDGRLNLDDFRRIAGRCNMIKESIT 485
           +ELRDMIDCFD DGDG+LNLDDFRRIAGRCNMIKESIT
Sbjct: 249 IELRDMIDCFDNDGDGKLNLDDFRRIAGRCNMIKESIT 286

Query: 486  540
           
Sbjct: 309  286

[Close]

BLAST of MU62126 vs. NCBI nr
Match: gi|566202845|ref|XP_006375290.1| (hypothetical protein POPTR_0014s05960g [Populus trichocarpa])

HSP 1 Score: 62.8 bits (151), Expect = 7.2e-07
Identity = 27/35 (77.14%), Postives = 31/35 (88.57%), Query Frame = -1


Query: 432 ELRDMIDCFDKDGDGRLNLDDFRRIAGRCNMIKES 491
           EL DMI CFD DGDG+L+LDDFR+IAGRCNMI+ S
Sbjct: 233 ELADMIHCFDGDGDGKLSLDDFRKIAGRCNMIQSS 267

Query: 492  537
           
Sbjct: 293  267

[Close]

BLAST of MU62126 vs. NCBI nr
Match: gi|593265138|ref|XP_007134747.1| (hypothetical protein PHAVU_010G072500g [Phaseolus vulgaris])

HSP 1 Score: 60.5 bits (145), Expect = 3.5e-06
Identity = 27/35 (77.14%), Postives = 30/35 (85.71%), Query Frame = -1


Query: 432 ELRDMIDCFDKDGDGRLNLDDFRRIAGRCNMIKES 491
           EL DMI CFD DGDG+L+LDDFR+I  RCNMIKES
Sbjct: 294 ELVDMIRCFDSDGDGKLSLDDFRKITIRCNMIKES 328

Query: 492  537
           
Sbjct: 354  328

[Close]

BLAST of MU62126 vs. NCBI nr
Match: gi|1021486193|ref|XP_016186095.1| (PREDICTED: nucleolin [Arachis ipaensis])

HSP 1 Score: 60.1 bits (144), Expect = 4.6e-06
Identity = 26/35 (74.29%), Postives = 30/35 (85.71%), Query Frame = -1


Query: 432 ELRDMIDCFDKDGDGRLNLDDFRRIAGRCNMIKES 491
           EL DMI CFD DGDGR+ LDDFR+IA RCN+I+ES
Sbjct: 242 ELVDMIRCFDSDGDGRITLDDFRKIAVRCNLIRES 276

Query: 492  537
           
Sbjct: 302  276

The following BLAST results are available for this feature:

BLAST of MU62126 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KDV1_CUCSA	1.1e-11	92.11	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G108450 PE=4 SV=1	[more]
B9MUX0_POPTR	8.5e-07	77.14	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s05960g PE=4 SV=1	[more]
V7ARA2_PHAVU	4.2e-06	77.14	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_010G072500g PE=4 SV=1	[more]
A0A068UMG6_COFCA	9.4e-06	71.43	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00028889001 PE=4 SV=1	[more]
A0A0D2QP81_GOSRA	9.4e-06	68.57	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G089100 PE=4 SV=1	[more]

BLAST of MU62126 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G73440.1	4.5e-07	62.86	calmodulin-related	[more]

BLAST of MU62126 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659120420\|ref\|XP_008460184.1\|	3.3e-12	94.74	PREDICTED: uncharacterized protein LOC103499070 [Cucumis melo]	[more]
gi\|449445469\|ref\|XP_004140495.1\|	7.4e-12	92.11	PREDICTED: uncharacterized protein LOC101206207 [Cucumis sativus]	[more]
gi\|566202845\|ref\|XP_006375290.1\|	7.2e-07	77.14	hypothetical protein POPTR_0014s05960g [Populus trichocarpa]	[more]
gi\|593265138\|ref\|XP_007134747.1\|	3.5e-06	77.14	hypothetical protein PHAVU_010G072500g [Phaseolus vulgaris]	[more]
gi\|1021486193\|ref\|XP_016186095.1\|	4.6e-06	74.29	PREDICTED: nucleolin [Arachis ipaensis]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR002048	EF_hand_dom
IPR011992	EF-hand-dom_pair
IPR018247	EF_Hand_1_Ca_BS

Vocabulary: **Molecular Function**
Term	Definition
GO:0005509	calcium ion binding

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005509	calcium ion binding

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C022245	MELO3C022245	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
IA28YF10RM1	IA28YF10RM1	EST

InterPro

Analysis Name: InterPro Annotations of melon unigene v4
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002048	EF-hand domain	PFAM	PF00036	EF-hand_1	coord: 2..26 score: 3.
IPR002048	EF-hand domain	SMART	SM00054	efh_1	coord: 2..30 score: 6.
IPR002048	EF-hand domain	PROFILE	PS50222	EF_HAND_2	coord: 1..33 score: 11
IPR011992	EF-hand domain pair	GENE3D	G3DSA:1.10.238.10		coord: 2..29 score: 5.
IPR011992	EF-hand domain pair	unknown	SSF47473	EF-hand	coord: 2..32 score: 9.8
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 11..23 scor