|
|
The following sequences are available for this feature:
transcribed_cluster sequence ACCAACACATCCAAATTTAGAACAATAATACAATACAAATACAACATCTCAACTACAAAAACCACTATGTCGGAGGAAAACCGCCACCACAGCCTCTTCCACCGCCACAACGAGGACGAAGAAAATGTCCCCTCTAAAAACTCCACTTACTCTTCTGACCTCTCTGAAAACAAACTCGATGCTTACTCAGAAAATAAGGTCGCCGCCGAGTACGGTGGTGGCTATGGGGATTCTCACAATAACGTCTCTGAGTACGGTAGTAGGTACGGAGAGTCTGAATATAAGGCTGGCGAGTACGGCGGTGGTTATGGTCAGTCCGAAAATAAAGTCGCCACTGAGTACGGTGGTCTGTCGGAAGATAAGGTAGATGAATACGGTGACGGGTATCGTAAGTCTGCAAGAAAGGTCACTGAAGAGTACGGTGGAGGGTATGGTGAGTTGGAACGTAAAGAGAACGAATATGATGGTGGGTATAGTAAGGGTAGACGTAGATCCGGCGAGTACGGTGGTGTAATGGAAGAAAAGGGCGGGGAGTACGGTGGTGGATACAAAAAAGAATATGAGGGAGGAAATGAAGATGAGAATTCAGATAAGGAAGATTACAAAAAGGAAGAGAAACACCATAAACACCTTGAGCACCTTGGCGAGATTGGTGCCGCCGCCGCCGGTGCCTTTGCCTTGGTATAAATATATTTAATATATATTTTTATACAACTCTCATTCATCCATCTTTCTACAATATTACTATTATTATTATTATTCATTAAA
BLAST of MU62044 vs. TrEMBL
Match: A0A0A0K8U6_CUCSA (Abscisic stress ripening-like protein OS=Cucumis sativus GN=Csa_6G014830 PE=4 SV=1) HSP 1 Score: 182.2 bits (461), Expect = 8.1e-43 Identity = 107/203 (52.71%), Postives = 112/203 (55.17%), Query Frame = 1
Query: 67 MSEENRHH----SLFHRHNEDEENVPSKNSTYSSDLSENKLDAY------SENKVAAEYG 126
MSEENRHH SLFHRH EDEENVPSK STYS DLSE+KLDAY SENKVAAEYG
Sbjct: 1 MSEENRHHGHHHSLFHRHKEDEENVPSKTSTYSEDLSEDKLDAYGSAYGGSENKVAAEYG 60
Query: 127 GGYGDSHNNVSEYGSRXXXXXXXXXXXXXXXXXXXNKVATEYGGLSEDKVDEYGDGYRKS 186
GGYG+SHN V+EYGSR NKVATEYGG EDKVDEYGDGYRKS
Sbjct: 61 GGYGESHNKVAEYGSRYGELEDKAGEYGGGYGLSENKVATEYGGQLEDKVDEYGDGYRKS 120
Query: 187 ARKVT--------------XXXXXXXXXXXRKENEYDGGYSKGRRRSXXXXXXXXXXXXX 246
KVT RKE+EYDGGYSKGRR+S
Sbjct: 121 ESKVTAEYGGGYGESGDKGGEYGGGYGESERKEDEYDGGYSKGRRKSGEYGGGMEEEGGE 180
Query: 247 XXXXXXXXXXXXXXXXNSDKEDY 306
NSDKEDY
Sbjct: 181 YGGVYKKEYEGGNEDENSDKEDY 203
Query: 307 366
Sbjct: 241 203
Query: 367 426
Sbjct: 301 203
Query: 427 486
Sbjct: 361 203
Query: 487 546
Sbjct: 421 203
Query: 547 604
Sbjct: 481 203
BLAST of MU62044 vs. NCBI nr
Match: gi|659126238|ref|XP_008463082.1| (PREDICTED: keratin, type I cytoskeletal 9-like [Cucumis melo]) HSP 1 Score: 216.5 bits (550), Expect = 5.5e-53 Identity = 119/179 (66.48%), Postives = 120/179 (67.04%), Query Frame = 1
Query: 67 MSEENRHHSLFHRHNEDEENVPSKNSTYSSDLSENKLDAYSENKVAAEYGGGYGDSHNNV 126
MSEENRHHSLFHRHNEDEENVPSKNSTYSSDLSENKLDAYSENKVAAEYGGGYGDSHNNV
Sbjct: 1 MSEENRHHSLFHRHNEDEENVPSKNSTYSSDLSENKLDAYSENKVAAEYGGGYGDSHNNV 60
Query: 127 SEYGSRXXXXXXXXXXXXXXXXXXXNKVATEYGGLSEDKVDEYGDGYRKSARKVTXXXXX 186
SEYGSR NKVATEYGGLSEDKVDEYGDGYRKSARKVT
Sbjct: 61 SEYGSRYGESEYKAGEYGGGYGQSENKVATEYGGLSEDKVDEYGDGYRKSARKVTGEYGG 120
Query: 187 XXXXXXRKENEYDGGYSKGRRRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNSDKEDY 246
RKE+EYDGGYSKGRRRS NSDKEDY
Sbjct: 121 GYGELERKEDEYDGGYSKGRRRSGEYGGVMEEKGGEYGGGYKKEYEGGNEDENSDKEDY 179
Query: 247 306
Sbjct: 181 179
Query: 307 366
Sbjct: 241 179
Query: 367 426
Sbjct: 301 179
Query: 427 486
Sbjct: 361 179
Query: 487 546
Sbjct: 421 179
Query: 547 604
Sbjct: 481 179
BLAST of MU62044 vs. NCBI nr
Match: gi|449441220|ref|XP_004138380.1| (PREDICTED: glycine-rich cell wall structural protein 1.8-like [Cucumis sativus]) HSP 1 Score: 171.4 bits (433), Expect = 2.0e-39 Identity = 107/203 (52.71%), Postives = 112/203 (55.17%), Query Frame = 1
Query: 67 MSEENRHH----SLFHRHNEDEENVPSKNSTYSSDLSENKLDAY------SENKVAAEYG 126
MSEENRHH SLFHRH EDEENVPSK STYS DLSE+KLDAY SENKVAAEYG
Sbjct: 1 MSEENRHHGHHHSLFHRHKEDEENVPSKTSTYSEDLSEDKLDAYGSAYGGSENKVAAEYG 60
Query: 127 GGYGDSHNNVSEYGSRXXXXXXXXXXXXXXXXXXXNKVATEYGGLSEDKVDEYGDGYRKS 186
GGYG+SHN V+EYGSR NKVATEYGG EDKVDEYGDGYRKS
Sbjct: 61 GGYGESHNKVAEYGSRYGELEDKAGEYGGGYGLSENKVATEYGGQLEDKVDEYGDGYRKS 120
Query: 187 ARKVT--------------XXXXXXXXXXXRKENEYDGGYSKGRRRSXXXXXXXXXXXXX 246
KVT RKE+EYDGGYSKGRR+S
Sbjct: 121 ESKVTAEYGGGYGESGDKGGEYGGGYGESERKEDEYDGGYSKGRRKSGEYGGGMEEEGGE 180
Query: 247 XXXXXXXXXXXXXXXXNSDKEDY 306
NSDKEDY
Sbjct: 181 YGGVYKKEYEGGNEDENSDKEDY 203
Query: 307 366
Sbjct: 241 203
Query: 367 426
Sbjct: 301 203
Query: 427 486
Sbjct: 361 203
Query: 487 546
Sbjct: 421 203
Query: 547 604
Sbjct: 481 203
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0K8U6_CUCSA | 8.1e-43 | 52.71 | Abscisic stress ripening-like protein OS=Cucumis sativus GN=Csa_6G014830 PE=4 SV... | [more] |
The following terms have been associated with this transcribed_cluster:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR003496 | ABA_WDS |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006950 | response to stress |
GO Assignments
This transcribed_cluster is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006950 |
response to stress |
This transcribed_cluster is associated with the following gene feature(s):
The following EST feature(s) are a part of this transcribed_cluster:
Analysis Name: InterPro Annotations of melon unigene v4
Date Performed: 2016-11-16
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR003496 | ABA/WDS induced protein | PFAM | PF02496 | ABA_WDS | coord: 178..205
score: 1. |
| None | No IPR available | unknown | Coil | Coil | coord: 162..182
scor |
| None | No IPR available | PANTHER | PTHR33801 | FAMILY NOT NAMED | coord: 147..205
score: 2.2 |
| None | No IPR available | PANTHER | PTHR33801:SF7 | SUBFAMILY NOT NAMED | coord: 147..205
score: 2.2 |
|
