MU61907 (transcribed_cluster) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MU61907
Type	transcribed_cluster
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Eukaryotic peptide chain release factor subunit 1-2
Location	chr11 : 30206925 .. 30207048 (+)
Sequence length	123

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

ATGAATTGCTAGAATCTGATGACAACTTTGGCTTCTTTGTCATGGATGGTAATGGGACACTCTTTGGCACATTGAGTAGTAACACACGTGAAGTCCTTCACAAATTTAGTGTCTACCTTCCTA

Library


Library category	ESTs
melon HS library	1

Homology

[Close]

BLAST of MU61907 vs. Swiss-Prot
Match: ERF1X_ARATH (Eukaryotic peptide chain release factor subunit 1-1 OS=Arabidopsis thaliana GN=ERF1-1 PE=1 SV=2)

HSP 1 Score: 75.1 bits (183), Expect = 1.9e-13
Identity = 36/40 (90.00%), Postives = 34/40 (85.00%), Query Frame = 3


Query: 3   ELLESDDNFGFFVMDGNGTLFGTLSSNTREVLHKFSVYLP 62
           ELLESDD FGF VMDGNGTLFGTLS NTREVLHKFSV LP
Sbjct: 137 ELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLP 176

Query: 63   122
           
Sbjct: 197  176

[Close]

BLAST of MU61907 vs. Swiss-Prot
Match: ERF1Y_ARATH (Eukaryotic peptide chain release factor subunit 1-2 OS=Arabidopsis thaliana GN=ERF1-2 PE=1 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 4.3e-13
Identity = 35/40 (87.50%), Postives = 34/40 (85.00%), Query Frame = 3


Query: 3   ELLESDDNFGFFVMDGNGTLFGTLSSNTREVLHKFSVYLP 62
           ELLESDD FGF VMDGNGTLFGTLS NTREVLHKF+V LP
Sbjct: 135 ELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFTVDLP 174

Query: 63   122
           
Sbjct: 195  174

[Close]

BLAST of MU61907 vs. Swiss-Prot
Match: ERF1Z_ARATH (Eukaryotic peptide chain release factor subunit 1-3 OS=Arabidopsis thaliana GN=ERF1-3 PE=1 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 4.3e-13
Identity = 35/40 (87.50%), Postives = 34/40 (85.00%), Query Frame = 3


Query: 3   ELLESDDNFGFFVMDGNGTLFGTLSSNTREVLHKFSVYLP 62
           ELLESDD FGF VMDGNGTLFGTLS NTREVLHKF+V LP
Sbjct: 136 ELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFTVDLP 175

Query: 63   122
           
Sbjct: 196  175

[Close]

BLAST of MU61907 vs. Swiss-Prot
Match: ERF1_PODAS (Eukaryotic peptide chain release factor subunit 1 OS=Podospora anserina GN=SU2 PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 2.4e-11
Identity = 31/40 (77.50%), Postives = 32/40 (80.00%), Query Frame = 3


Query: 3   ELLESDDNFGFFVMDGNGTLFGTLSSNTREVLHKFSVYLP 62
           ELLESD  FGF VMDGNG LFGTLS NTR+++HKFSV LP
Sbjct: 139 ELLESDQKFGFIVMDGNGALFGTLSGNTRDIVHKFSVDLP 178

Query: 63   122
           
Sbjct: 199  178

[Close]

BLAST of MU61907 vs. Swiss-Prot
Match: ERF1_BLEAM (Eukaryotic peptide chain release factor subunit 1 OS=Blepharisma americanum GN=eRF1 PE=2 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 2.6e-10
Identity = 29/40 (72.50%), Postives = 31/40 (77.50%), Query Frame = 3


Query: 3   ELLESDDNFGFFVMDGNGTLFGTLSSNTREVLHKFSVYLP 62
           +LL  DD FGF ++DGNGTLFGTL  NT+EVLHKFSV LP
Sbjct: 138 DLLVMDDKFGFIIIDGNGTLFGTLQGNTKEVLHKFSVDLP 177

Query: 63   122
           
Sbjct: 198  177

[Close]

BLAST of MU61907 vs. TrEMBL
Match: M7YEJ3_TRIUA (Eukaryotic peptide chain release factor subunit 1-1 OS=Triticum urartu GN=TRIUR3_05303 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 2.2e-11
Identity = 36/40 (90.00%), Postives = 36/40 (90.00%), Query Frame = 3


Query: 3   ELLESDDNFGFFVMDGNGTLFGTLSSNTREVLHKFSVYLP 62
           ELLESDD FGF VMDGNGTLFGTLS NTREVLHKFSV LP
Sbjct: 137 ELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLP 176

Query: 63   122
           
Sbjct: 197  176

[Close]

BLAST of MU61907 vs. TrEMBL
Match: D5LHJ0_BRAOB (Eukaryotic release factor 1-1 OS=Brassica oleracea var. botrytis GN=eRF1-1 PE=2 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 2.2e-11
Identity = 36/40 (90.00%), Postives = 36/40 (90.00%), Query Frame = 3


Query: 3   ELLESDDNFGFFVMDGNGTLFGTLSSNTREVLHKFSVYLP 62
           ELLESDD FGF VMDGNGTLFGTLS NTREVLHKFSV LP
Sbjct: 137 ELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLP 176

Query: 63   122
           
Sbjct: 197  176

[Close]

BLAST of MU61907 vs. TrEMBL
Match: A0A068UB37_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00020458001 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 2.2e-11
Identity = 36/40 (90.00%), Postives = 36/40 (90.00%), Query Frame = 3


Query: 3   ELLESDDNFGFFVMDGNGTLFGTLSSNTREVLHKFSVYLP 62
           ELLESDD FGF VMDGNGTLFGTLS NTREVLHKFSV LP
Sbjct: 186 ELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLP 225

Query: 63   122
           
Sbjct: 246  225

[Close]

BLAST of MU61907 vs. TrEMBL
Match: A0A059AFV6_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J01695 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 2.2e-11
Identity = 36/40 (90.00%), Postives = 36/40 (90.00%), Query Frame = 3


Query: 3   ELLESDDNFGFFVMDGNGTLFGTLSSNTREVLHKFSVYLP 62
           ELLESDD FGF VMDGNGTLFGTLS NTREVLHKFSV LP
Sbjct: 183 ELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLP 222

Query: 63   122
           
Sbjct: 243  222

[Close]

BLAST of MU61907 vs. TrEMBL
Match: K4DCD9_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 2.2e-11
Identity = 36/40 (90.00%), Postives = 36/40 (90.00%), Query Frame = 3


Query: 3   ELLESDDNFGFFVMDGNGTLFGTLSSNTREVLHKFSVYLP 62
           ELLESDD FGF VMDGNGTLFGTLS NTREVLHKFSV LP
Sbjct: 105 ELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLP 144

Query: 63   122
           
Sbjct: 165  144

[Close]

BLAST of MU61907 vs. TAIR10
Match: AT5G47880.1 (AT5G47880.1 eukaryotic release factor 1-1)

HSP 1 Score: 75.1 bits (183), Expect = 1.1e-14
Identity = 36/40 (90.00%), Postives = 34/40 (85.00%), Query Frame = 3


Query: 3   ELLESDDNFGFFVMDGNGTLFGTLSSNTREVLHKFSVYLP 62
           ELLESDD FGF VMDGNGTLFGTLS NTREVLHKFSV LP
Sbjct: 137 ELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLP 176

Query: 63   122
           
Sbjct: 197  176

[Close]

BLAST of MU61907 vs. TAIR10
Match: AT1G12920.1 (AT1G12920.1 eukaryotic release factor 1-2)

HSP 1 Score: 73.9 bits (180), Expect = 2.4e-14
Identity = 35/40 (87.50%), Postives = 34/40 (85.00%), Query Frame = 3


Query: 3   ELLESDDNFGFFVMDGNGTLFGTLSSNTREVLHKFSVYLP 62
           ELLESDD FGF VMDGNGTLFGTLS NTREVLHKF+V LP
Sbjct: 135 ELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFTVDLP 174

Query: 63   122
           
Sbjct: 195  174

[Close]

BLAST of MU61907 vs. TAIR10
Match: AT3G26618.1 (AT3G26618.1 eukaryotic release factor 1-3)

HSP 1 Score: 73.9 bits (180), Expect = 2.4e-14
Identity = 35/40 (87.50%), Postives = 34/40 (85.00%), Query Frame = 3


Query: 3   ELLESDDNFGFFVMDGNGTLFGTLSSNTREVLHKFSVYLP 62
           ELLESDD FGF VMDGNGTLFGTLS NTREVLHKF+V LP
Sbjct: 136 ELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFTVDLP 175

Query: 63   122
           
Sbjct: 196  175

[Close]

BLAST of MU61907 vs. NCBI nr
Match: gi|1155261|gb|AAA91169.1| (eukaryotic release factor 1 homolog [Arabidopsis thaliana])

HSP 1 Score: 75.9 bits (185), Expect = 1.8e-11
Identity = 36/40 (90.00%), Postives = 36/40 (90.00%), Query Frame = 3


Query: 3   ELLESDDNFGFFVMDGNGTLFGTLSSNTREVLHKFSVYLP 62
           ELLESDD FGF VMDGNGTLFGTLS NTREVLHKFSV LP
Sbjct: 137 ELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLP 176

Query: 63   122
           
Sbjct: 197  176

[Close]

BLAST of MU61907 vs. NCBI nr
Match: gi|629085918|gb|KCW52275.1| (hypothetical protein EUGRSUZ_J01695 [Eucalyptus grandis])

HSP 1 Score: 75.9 bits (185), Expect = 1.8e-11
Identity = 36/40 (90.00%), Postives = 36/40 (90.00%), Query Frame = 3


Query: 3   ELLESDDNFGFFVMDGNGTLFGTLSSNTREVLHKFSVYLP 62
           ELLESDD FGF VMDGNGTLFGTLS NTREVLHKFSV LP
Sbjct: 183 ELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLP 222

Query: 63   122
           
Sbjct: 243  222

[Close]

BLAST of MU61907 vs. NCBI nr
Match: gi|460394082|ref|XP_004242634.1| (PREDICTED: eukaryotic peptide chain release factor subunit 1-3-like [Solanum lycopersicum])

HSP 1 Score: 75.9 bits (185), Expect = 1.8e-11
Identity = 36/40 (90.00%), Postives = 36/40 (90.00%), Query Frame = 3


Query: 3   ELLESDDNFGFFVMDGNGTLFGTLSSNTREVLHKFSVYLP 62
           ELLESDD FGF VMDGNGTLFGTLS NTREVLHKFSV LP
Sbjct: 137 ELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLP 176

Query: 63   122
           
Sbjct: 197  176

[Close]

BLAST of MU61907 vs. NCBI nr
Match: gi|659119950|ref|XP_008459930.1| (PREDICTED: eukaryotic peptide chain release factor subunit 1-3-like [Cucumis melo])

HSP 1 Score: 75.9 bits (185), Expect = 1.8e-11
Identity = 36/40 (90.00%), Postives = 36/40 (90.00%), Query Frame = 3


Query: 3   ELLESDDNFGFFVMDGNGTLFGTLSSNTREVLHKFSVYLP 62
           ELLESDD FGF VMDGNGTLFGTLS NTREVLHKFSV LP
Sbjct: 137 ELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLP 176

Query: 63   122
           
Sbjct: 197  176

[Close]

BLAST of MU61907 vs. NCBI nr
Match: gi|685323852|ref|XP_009151586.1| (PREDICTED: eukaryotic peptide chain release factor subunit 1-1 [Brassica rapa])

HSP 1 Score: 75.9 bits (185), Expect = 1.8e-11
Identity = 36/40 (90.00%), Postives = 36/40 (90.00%), Query Frame = 3


Query: 3   ELLESDDNFGFFVMDGNGTLFGTLSSNTREVLHKFSVYLP 62
           ELLESDD FGF VMDGNGTLFGTLS NTREVLHKFSV LP
Sbjct: 137 ELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLP 176

Query: 63   122
           
Sbjct: 197  176

The following BLAST results are available for this feature:

BLAST of MU61907 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ERF1X_ARATH	1.9e-13	90.00	Eukaryotic peptide chain release factor subunit 1-1 OS=Arabidopsis thaliana GN=E...	[more]
ERF1Y_ARATH	4.3e-13	87.50	Eukaryotic peptide chain release factor subunit 1-2 OS=Arabidopsis thaliana GN=E...	[more]
ERF1Z_ARATH	4.3e-13	87.50	Eukaryotic peptide chain release factor subunit 1-3 OS=Arabidopsis thaliana GN=E...	[more]
ERF1_PODAS	2.4e-11	77.50	Eukaryotic peptide chain release factor subunit 1 OS=Podospora anserina GN=SU2 P...	[more]
ERF1_BLEAM	2.6e-10	72.50	Eukaryotic peptide chain release factor subunit 1 OS=Blepharisma americanum GN=e...	[more]

BLAST of MU61907 vs. TrEMBL


Match Name	E-value	Identity	Description
M7YEJ3_TRIUA	2.2e-11	90.00	Eukaryotic peptide chain release factor subunit 1-1 OS=Triticum urartu GN=TRIUR3...	[more]
D5LHJ0_BRAOB	2.2e-11	90.00	Eukaryotic release factor 1-1 OS=Brassica oleracea var. botrytis GN=eRF1-1 PE=2 ...	[more]
A0A068UB37_COFCA	2.2e-11	90.00	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00020458001 PE=4 SV=1	[more]
A0A059AFV6_EUCGR	2.2e-11	90.00	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J01695 PE=4 SV=1	[more]
K4DCD9_SOLLC	2.2e-11	90.00	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]

BLAST of MU61907 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G47880.1	1.1e-14	90.00	eukaryotic release factor 1-1	[more]
AT1G12920.1	2.4e-14	87.50	eukaryotic release factor 1-2	[more]
AT3G26618.1	2.4e-14	87.50	eukaryotic release factor 1-3	[more]

BLAST of MU61907 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|1155261\|gb\|AAA91169.1\|	1.8e-11	90.00	eukaryotic release factor 1 homolog [Arabidopsis thaliana]	[more]
gi\|629085918\|gb\|KCW52275.1\|	1.8e-11	90.00	hypothetical protein EUGRSUZ_J01695 [Eucalyptus grandis]	[more]
gi\|460394082\|ref\|XP_004242634.1\|	1.8e-11	90.00	PREDICTED: eukaryotic peptide chain release factor subunit 1-3-like [Solanum lyc...	[more]
gi\|659119950\|ref\|XP_008459930.1\|	1.8e-11	90.00	PREDICTED: eukaryotic peptide chain release factor subunit 1-3-like [Cucumis mel...	[more]
gi\|685323852\|ref\|XP_009151586.1\|	1.8e-11	90.00	PREDICTED: eukaryotic peptide chain release factor subunit 1-1 [Brassica rapa]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR004403	Peptide_chain-rel_eRF1/aRF1

Vocabulary: **Molecular Function**
Term	Definition
GO:0016149	translation release factor activity, codon specific

Vocabulary: **Cellular Component**
Term	Definition
GO:0005737	cytoplasm

Vocabulary: **Biological Process**
Term	Definition
GO:0006415	translational termination

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006415	translational termination
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0016149	translation release factor activity, codon specific

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C022369	MELO3C022369	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
HS39B11	HS39B11	EST

InterPro

Analysis Name: InterPro Annotations of melon unigene v4
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004403	Peptide chain release factor eRF1/aRF1	PANTHER	PTHR10113	PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1	coord: 2..41 score: 4.9
None	No IPR available	GENE3D	G3DSA:3.30.420.60		coord: 7..38 score: 1.6
None	No IPR available	PANTHER	PTHR10113:SF13	SUBFAMILY NOT NAMED	coord: 2..41 score: 4.9
None	No IPR available	unknown	SSF53137	Translational machinery components	coord: 7..41 score: 9.1