MU59222 (transcribed_cluster) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MU59222
Type	transcribed_cluster
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	E3 ubiquitin-protein ligase
Location	chr10 : 319044 .. 321823 (-)
Sequence length	848

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

GCTGCCGCCTTCCCTCTTTCTTTCCAACTTTCGTTTAAACAAATACAAAAAAAAAAAAAAACAAAAAAAAAGTAAAAGAATTTCCCTTTTCTCTCTTCTGGGTATTTTGAATCTTTGATTGATTGCCCCTCCATGAAAAAGGGTCACAGAACTCTCAGATTTCATTCAAAATGAATAAAGAAATCGAATAAAATTTCGGAATTTCGAGGACACTGAAGCCGGCCTGCTTGTTGTTGTGGGCAAGGGGAGAAGGGTCCGCACGTCTTAATTTCTCTCTTTTCTTTTTCCCCTTTTTGTTCTTTCTCGAGAGAAAAAAAAATCTCTCTCTTTCATCATACGCTCCTCTTCCTCGGCTCCTCCTCTTTCCCTCTCTCTCTCTCAGCCTTTAATTTGAATTCCCTCCGTTCCCAAACCGCTCACTTCTTCACATTTCTCTCTGTATTACCTCTTTTACTTGCGGTTTATTGTCCTATCACAAACCAAAGTTGTCGTTTACTCAGATTTCTTTGGTGGGGCTCTCGTTCTCTTTTGAGGCATTCTATTGATAAAAATGACATCTGCAAATCCTTATTTTGATGACATCCGGAACAAACCTGAGGTTATCGATCCTCCCTAAGATGATGATATGATGGATGTTAGTGAAAGTGTGAGTGATCCTGCTCGAGCTGGAGGAAAACCTAATATAGTCTCTAGCAGTGTTCGTGAGCTGTTGGAGTGTCCTGTTTGCTTAAATGCTATGTACCCTCCCATTCATCAGGTTTGTTACCATCCTTTGAAGATCTTTTGAATGAAATTGTTTTGTTGCTGGAGAGGGCCTGGGTGAAGGGTTTAGGTGGTGTCAATCATGG

Library


Library category	ESTs
melon CI library	1

Homology

[Close]

BLAST of MU59222 vs. TrEMBL
Match: E5GCK0_CUCME (E3 ubiquitin-protein ligase OS=Cucumis melo subsp. melo PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 7.1e-16
Identity = 46/69 (66.67%), Postives = 47/69 (68.12%), Query Frame = 2


Query: 551 MTSANPYFDDIRNKXXXXXXXXXXXXXXXXXXXXXXARAGGKPNIVSSSVRELLECPVCL 610
           MTSANPYFDDIRNK                      ARAGGKPN+VSSSVRELLECPVCL
Sbjct: 1   MTSANPYFDDIRNKPEVIDPPQDDDMMDVSESVSDPARAGGKPNVVSSSVRELLECPVCL 60

Query: 611 NAMYPPIHQ 670
           NAMYPPIHQ
Sbjct: 61  NAMYPPIHQ 69

Query: 671  730
           
Sbjct: 121  69

Query: 731  758
           
Sbjct: 181  69

[Close]

BLAST of MU59222 vs. TrEMBL
Match: A0A0A0KRN7_CUCSA (E3 ubiquitin-protein ligase OS=Cucumis sativus GN=Csa_5G623730 PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.6e-15
Identity = 45/69 (65.22%), Postives = 47/69 (68.12%), Query Frame = 2


Query: 551 MTSANPYFDDIRNKXXXXXXXXXXXXXXXXXXXXXXARAGGKPNIVSSSVRELLECPVCL 610
           MTSANPYFDDIRNK                      AR+GGKPN+VSSSVRELLECPVCL
Sbjct: 1   MTSANPYFDDIRNKPEVIDPPQDDDMMDVSESVSDPARSGGKPNVVSSSVRELLECPVCL 60

Query: 611 NAMYPPIHQ 670
           NAMYPPIHQ
Sbjct: 61  NAMYPPIHQ 69

Query: 671  730
           
Sbjct: 121  69

Query: 731  758
           
Sbjct: 181  69

[Close]

BLAST of MU59222 vs. TrEMBL
Match: B9RGC2_RICCO (E3 ubiquitin-protein ligase OS=Ricinus communis GN=RCOM_1452850 PE=3 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.7e-09
Identity = 37/70 (52.86%), Postives = 42/70 (60.00%), Query Frame = 2


Query: 551 MTSANPYFDDIRNKXXXXXXXXXXXXXXXXXXXXXXARAGGKPNI-VSSSVRELLECPVC 610
           M S NP+FDD+R+K                      A+   KPN+ VSSSVRELLECPVC
Sbjct: 1   MASGNPFFDDLRSKPEVIDPPPSEDMMDVGESVNDPAQTAMKPNVTVSSSVRELLECPVC 60

Query: 611 LNAMYPPIHQ 670
           LNAMYPPIHQ
Sbjct: 61  LNAMYPPIHQ 70

Query: 671  730
           
Sbjct: 121  70

Query: 731  758
           
Sbjct: 181  70

[Close]

BLAST of MU59222 vs. TrEMBL
Match: A9PB73_POPTR (E3 ubiquitin-protein ligase OS=Populus trichocarpa GN=POPTR_0003s19820g PE=2 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 3.8e-09
Identity = 38/70 (54.29%), Postives = 42/70 (60.00%), Query Frame = 2


Query: 551 MTSANPYFDDIRNKXXXXXXXXXXXXXXXXXXXXXXARAGGKPNI-VSSSVRELLECPVC 610
           M S+N +FDDIRNK                      A+   KPN+ VSSSVRELLECPVC
Sbjct: 1   MASSNLFFDDIRNKPEVIDPPQNEDLTDIGESVNDPAQTALKPNVTVSSSVRELLECPVC 60

Query: 611 LNAMYPPIHQ 670
           LNAMYPPIHQ
Sbjct: 61  LNAMYPPIHQ 70

Query: 671  730
           
Sbjct: 121  70

Query: 731  758
           
Sbjct: 181  70

[Close]

BLAST of MU59222 vs. TrEMBL
Match: A0A067KWI1_JATCU (E3 ubiquitin-protein ligase OS=Jatropha curcas GN=JCGZ_24516 PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.1e-08
Identity = 36/70 (51.43%), Postives = 42/70 (60.00%), Query Frame = 2


Query: 551 MTSANPYFDDIRNKXXXXXXXXXXXXXXXXXXXXXXARAGGKPNI-VSSSVRELLECPVC 610
           M S NP+F+D+R+K                      A+   KPN+ VSSSVRELLECPVC
Sbjct: 1   MASGNPFFEDMRSKPEVIDPPQNEDMMDVSESVNDPAQMALKPNVTVSSSVRELLECPVC 60

Query: 611 LNAMYPPIHQ 670
           LNAMYPPIHQ
Sbjct: 61  LNAMYPPIHQ 70

Query: 671  730
           
Sbjct: 121  70

Query: 731  758
           
Sbjct: 181  70

[Close]

BLAST of MU59222 vs. NCBI nr
Match: gi|659092182|ref|XP_008446940.1| (PREDICTED: E3 ubiquitin-protein ligase SINAT5-like [Cucumis melo])

HSP 1 Score: 95.9 bits (237), Expect = 1.2e-16
Identity = 46/69 (66.67%), Postives = 47/69 (68.12%), Query Frame = 2


Query: 551 MTSANPYFDDIRNKXXXXXXXXXXXXXXXXXXXXXXARAGGKPNIVSSSVRELLECPVCL 610
           MTSANPYFDDIRNK                      ARAGGKPN+VSSSVRELLECPVCL
Sbjct: 1   MTSANPYFDDIRNKPEVIDPPQDDDMMDVSESVSDPARAGGKPNVVSSSVRELLECPVCL 60

Query: 611 NAMYPPIHQ 670
           NAMYPPIHQ
Sbjct: 61  NAMYPPIHQ 69

Query: 671  730
           
Sbjct: 121  69

Query: 731  758
           
Sbjct: 181  69

[Close]

BLAST of MU59222 vs. NCBI nr
Match: gi|778706762|ref|XP_011655908.1| (PREDICTED: E3 ubiquitin-protein ligase SINAT5 [Cucumis sativus])

HSP 1 Score: 94.7 bits (234), Expect = 2.7e-16
Identity = 45/69 (65.22%), Postives = 47/69 (68.12%), Query Frame = 2


Query: 551 MTSANPYFDDIRNKXXXXXXXXXXXXXXXXXXXXXXARAGGKPNIVSSSVRELLECPVCL 610
           MTSANPYFDDIRNK                      AR+GGKPN+VSSSVRELLECPVCL
Sbjct: 1   MTSANPYFDDIRNKPEVIDPPQDDDMMDVSESVSDPARSGGKPNVVSSSVRELLECPVCL 60

Query: 611 NAMYPPIHQ 670
           NAMYPPIHQ
Sbjct: 61  NAMYPPIHQ 69

Query: 671  730
           
Sbjct: 121  69

Query: 731  758
           
Sbjct: 181  69

[Close]

BLAST of MU59222 vs. NCBI nr
Match: gi|1000979549|ref|XP_015570744.1| (PREDICTED: E3 ubiquitin-protein ligase SINAT5 isoform X1 [Ricinus communis])

HSP 1 Score: 74.7 bits (182), Expect = 2.9e-10
Identity = 37/70 (52.86%), Postives = 42/70 (60.00%), Query Frame = 2


Query: 551 MTSANPYFDDIRNKXXXXXXXXXXXXXXXXXXXXXXARAGGKPNI-VSSSVRELLECPVC 610
           M S NP+FDD+R+K                      A+   KPN+ VSSSVRELLECPVC
Sbjct: 1   MASGNPFFDDLRSKPEVIDPPPSEDMMDVGESVNDPAQTAMKPNVTVSSSVRELLECPVC 60

Query: 611 LNAMYPPIHQ 670
           LNAMYPPIHQ
Sbjct: 61  LNAMYPPIHQ 70

Query: 671  730
           
Sbjct: 121  70

Query: 731  758
           
Sbjct: 181  70

[Close]

BLAST of MU59222 vs. NCBI nr
Match: gi|1000979551|ref|XP_015570745.1| (PREDICTED: E3 ubiquitin-protein ligase SINAT3 isoform X2 [Ricinus communis])

HSP 1 Score: 74.7 bits (182), Expect = 2.9e-10
Identity = 37/70 (52.86%), Postives = 42/70 (60.00%), Query Frame = 2


Query: 551 MTSANPYFDDIRNKXXXXXXXXXXXXXXXXXXXXXXARAGGKPNI-VSSSVRELLECPVC 610
           M S NP+FDD+R+K                      A+   KPN+ VSSSVRELLECPVC
Sbjct: 1   MASGNPFFDDLRSKPEVIDPPPSEDMMDVGESVNDPAQTAMKPNVTVSSSVRELLECPVC 60

Query: 611 LNAMYPPIHQ 670
           LNAMYPPIHQ
Sbjct: 61  LNAMYPPIHQ 70

Query: 671  730
           
Sbjct: 121  70

Query: 731  758
           
Sbjct: 181  70

[Close]

BLAST of MU59222 vs. NCBI nr
Match: gi|729420045|ref|XP_010557857.1| (PREDICTED: E3 ubiquitin-protein ligase SINAT5-like [Tarenaya hassleriana])

HSP 1 Score: 74.3 bits (181), Expect = 3.7e-10
Identity = 37/70 (52.86%), Postives = 43/70 (61.43%), Query Frame = 2


Query: 551 MTSANPYFDDIRNKXXXXXXXXXXXXXXXXXXXXXXARAGGKPNI-VSSSVRELLECPVC 610
           M SANP+FDD+R K                      A++  KPN+ +SSSVRELLECPVC
Sbjct: 1   MASANPFFDDLRLKPEVVHTQQVEEVMGIGDHSIDPAQSSVKPNLTISSSVRELLECPVC 60

Query: 611 LNAMYPPIHQ 670
           LNAMYPPIHQ
Sbjct: 61  LNAMYPPIHQ 70

Query: 671  730
           
Sbjct: 121  70

Query: 731  758
           
Sbjct: 181  70

The following BLAST results are available for this feature:

BLAST of MU59222 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GCK0_CUCME	7.1e-16	66.67	E3 ubiquitin-protein ligase OS=Cucumis melo subsp. melo PE=3 SV=1	[more]
A0A0A0KRN7_CUCSA	1.6e-15	65.22	E3 ubiquitin-protein ligase OS=Cucumis sativus GN=Csa_5G623730 PE=3 SV=1	[more]
B9RGC2_RICCO	1.7e-09	52.86	E3 ubiquitin-protein ligase OS=Ricinus communis GN=RCOM_1452850 PE=3 SV=1	[more]
A9PB73_POPTR	3.8e-09	54.29	E3 ubiquitin-protein ligase OS=Populus trichocarpa GN=POPTR_0003s19820g PE=2 SV=...	[more]
A0A067KWI1_JATCU	1.1e-08	51.43	E3 ubiquitin-protein ligase OS=Jatropha curcas GN=JCGZ_24516 PE=3 SV=1	[more]

BLAST of MU59222 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659092182\|ref\|XP_008446940.1\|	1.2e-16	66.67	PREDICTED: E3 ubiquitin-protein ligase SINAT5-like [Cucumis melo]	[more]
gi\|778706762\|ref\|XP_011655908.1\|	2.7e-16	65.22	PREDICTED: E3 ubiquitin-protein ligase SINAT5 [Cucumis sativus]	[more]
gi\|1000979549\|ref\|XP_015570744.1\|	2.9e-10	52.86	PREDICTED: E3 ubiquitin-protein ligase SINAT5 isoform X1 [Ricinus communis]	[more]
gi\|1000979551\|ref\|XP_015570745.1\|	2.9e-10	52.86	PREDICTED: E3 ubiquitin-protein ligase SINAT3 isoform X2 [Ricinus communis]	[more]
gi\|729420045\|ref\|XP_010557857.1\|	3.7e-10	52.86	PREDICTED: E3 ubiquitin-protein ligase SINAT5-like [Tarenaya hassleriana]	[more]

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C012463	MELO3C012463	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
CI62H02	CI62H02	EST