MU57976 (transcribed_cluster) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MU57976
Type	transcribed_cluster
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Unknown protein
Location	chr1 : 1108946 .. 1110819 (-)
Sequence length	519

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

GTCTTTTGGCTTGTTAGCTTCTGTTGGATAGAAGATATGAGTGATCCCAAATATGCGTATCCCTACCCACCTCCTCAAGGAGGATATTATCAAGGGCCACCAGTGATGGCGCCACCTCAGTACGCCGCCCCACCGCCAAAACGACAACCGGGTTTCTTGGAGGGATGCCTTGCAGCTCTATGCTGCTGCTGTCTCCTTGATGAATGCTGCTGTGACCCTTCCATTATCTTTCTTACTTGATGCTATGAGAGATTTCTTCATTGCCTTTGTAGCTTATTCCAGCTCTCTGTCTTGGGGATGGTTTGGTTTTGTGTATAAACTTGGAAAGGATATATTGAACAAAGCTGCCTTTTGTTCTAGAGTTTACTTTACTCATTTGACAGTAACTTTACGGGCCATTTATATAATGAATAATTTAGTCTATAAACTTTAGAATGTATGCGTGTGTATTTAGGTTTTAAATGTGGAACTCTCTTTTCTGACATGTGAAAACCACACCAATAAATGACGAACTTTTAT

Library


Library category	ESTs
melon MNR09P2 library	1

Homology

[Close]

BLAST of MU57976 vs. TrEMBL
Match: A0A0A0K7L8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G069130 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 7.4e-08
Identity = 40/66 (60.61%), Postives = 47/66 (71.21%), Query Frame = 2


Query: 110 RHLSTPPHRQNDNRVSWRDALQLYAAAVSLMNAAVTLPLSFLLDAMRDFFIAFVAYSSSL 169
           ++ + PP RQ         ALQLYAAAVSLMNAAVTLPLSFLLDAMR+ FIAFVA++   
Sbjct: 28  QYAAPPPRRQ--------PALQLYAAAVSLMNAAVTLPLSFLLDAMRE-FIAFVAHTHVF 84

Query: 170 SWGWFG 229
              +FG
Sbjct: 88  INTFFG 84

Query: 230  289
           
Sbjct: 148  84

Query: 290  308
           
Sbjct: 208  84

[Close]

BLAST of MU57976 vs. TrEMBL
Match: A0A0A0K7L8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G069130 PE=4 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 2.7e-02
Identity = 22/38 (57.89%), Postives = 23/38 (60.53%), Query Frame = 1


Query: 37  MSDPKYAXXXXXXXXXXXXXXXVMAPPQYAAPPPKRQP 96
           MSDPKYA               VMAPPQYAAPPP+RQP
Sbjct: 1   MSDPKYAYPYPPPQGGYYQGPPVMAPPQYAAPPPRRQP 38

Query: 97   151
           
Sbjct: 61   38

[Close]

BLAST of MU57976 vs. NCBI nr
Match: gi|700188578|gb|KGN43811.1| (hypothetical protein Csa_7G069130 [Cucumis sativus])

HSP 1 Score: 63.2 bits (152), Expect = 5.3e-07
Identity = 40/66 (60.61%), Postives = 47/66 (71.21%), Query Frame = 2


Query: 110 RHLSTPPHRQNDNRVSWRDALQLYAAAVSLMNAAVTLPLSFLLDAMRDFFIAFVAYSSSL 169
           ++ + PP RQ         ALQLYAAAVSLMNAAVTLPLSFLLDAMR+ FIAFVA++   
Sbjct: 28  QYAAPPPRRQ--------PALQLYAAAVSLMNAAVTLPLSFLLDAMRE-FIAFVAHTHVF 84

Query: 170 SWGWFG 229
              +FG
Sbjct: 88  INTFFG 84

Query: 230  289
           
Sbjct: 148  84

Query: 290  308
           
Sbjct: 208  84

The following BLAST results are available for this feature:

BLAST of MU57976 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K7L8_CUCSA	7.4e-08	60.61	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G069130 PE=4 SV=1	[more]
A0A0A0K7L8_CUCSA	2.7e-02	57.89	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G069130 PE=4 SV=1	[more]

BLAST of MU57976 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700188578\|gb\|KGN43811.1\|	5.3e-07	60.61	hypothetical protein Csa_7G069130 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR028144	CYSTM_dom

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C018561	MELO3C018561	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
CA7YE10FM1	CA7YE10FM1	EST

InterPro

Analysis Name: InterPro Annotations of melon unigene v4
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR028144	Cysteine-rich transmembrane CYSTM domain	PFAM	PF12734	CYSTM	coord: 24..70 score: 6.6
None	No IPR available	PANTHER	PTHR31568	FAMILY NOT NAMED	coord: 10..72 score: 1.4
None	No IPR available	PANTHER	PTHR31568:SF15	SUBFAMILY NOT NAMED	coord: 10..72 score: 1.4