MU56220 (transcribed_cluster) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MU56220
Type	transcribed_cluster
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Glutaredoxin-like protein
Location	chr7 : 8671075 .. 8672730 (-)
Sequence length	486

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

GCCCGATTCTGACTCCATCTGCTTCATTTTCCTCTTCTCTTCCCTCTCGCAAACTCATTCTCTACTCCAAACCCGGATGCTGTTTGTGCGATGGCCTCAAAGAGAAACTACACGCCGCCTTTCTCCTCTCCGGCCCCGATTCTCTTCACGACGTCCACTTACAGGTGAGGGATATCACTACTAACCCTGAATGGGAGAGAGCTTACCAGTATGAGATTCCTGTGCTTGCGAAAGTCCGCTCTGATGGCTCGGAGAGGCCCATTCCAATCGAAACTTCTATGTGGAAAAGATAGGTCCTGACAGAGAAGCCTCTTATACTATCAAAGTTGCCCATTGCTACTTCTATTTCCATTTTCTGTGCTTAAATTTTCTGTAAACTAAGTTCGCTAGAACTACATACCTTCCTGGAACCCTTAGTATGAGCCAAATTGTTTGTGAAATTTCTTTCTTAGAGATAAAAATATGAAACAAGCTATTGGAAGGGTT

Library


Library category	ESTs
melon 46d library	1

Homology

[Close]

BLAST of MU56220 vs. TrEMBL
Match: A0A0A0L383_CUCSA (Glutaredoxin-like protein OS=Cucumis sativus GN=Csa_4G365550 PE=3 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 1.5e-34
Identity = 74/87 (85.06%), Postives = 75/87 (86.21%), Query Frame = 3


Query: 6   ILTPXXXXXXXXXXRKLILYSKPGCCLCDGLKEKLHAAFLLSGPDSLHDVHLQVRDITTN 65
           ILTP          RKLILYSKPGCCLCDGLKEKLHAAFLLSGPDSLHDVHLQVRDITTN
Sbjct: 29  ILTPSASFSSSLPSRKLILYSKPGCCLCDGLKEKLHAAFLLSGPDSLHDVHLQVRDITTN 88

Query: 66  PEWERAYQYEIPVLAKVRSDGSERPIP 125
           PEWERAYQYEIPVLAKVRSDGSE  +P
Sbjct: 89  PEWERAYQYEIPVLAKVRSDGSEEVLP 115

Query: 126  185
           
Sbjct: 149  115

Query: 186  245
           
Sbjct: 209  115

Query: 246  267
           
Sbjct: 269  115

[Close]

BLAST of MU56220 vs. TrEMBL
Match: I3SYL7_LOTJA (Glutaredoxin-like protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 2.9e-30
Identity = 65/73 (89.04%), Postives = 69/73 (94.52%), Query Frame = 3


Query: 48  RKLILYSKPGCCLCDGLKEKLHAAFLLSGPDSLHDVHLQVRDITTNPEWERAYQYEIPVL 107
           RKLILYSKPGCCLCDGLKEKLHAAFLLSGPDSL DVHLQVRDIT+NPEWE AYQYEIPVL
Sbjct: 45  RKLILYSKPGCCLCDGLKEKLHAAFLLSGPDSLTDVHLQVRDITSNPEWESAYQYEIPVL 104

Query: 108 AKVRSDGSERPIP 167
           AKV SDG+E+ +P
Sbjct: 105 AKVLSDGTEKTLP 117

Query: 168  227
           
Sbjct: 165  117

Query: 228  267
           
Sbjct: 225  117

[Close]

BLAST of MU56220 vs. TrEMBL
Match: I3SRG3_LOTJA (Glutaredoxin-like protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 2.9e-30
Identity = 65/73 (89.04%), Postives = 69/73 (94.52%), Query Frame = 3


Query: 48  RKLILYSKPGCCLCDGLKEKLHAAFLLSGPDSLHDVHLQVRDITTNPEWERAYQYEIPVL 107
           RKLILYSKPGCCLCDGLKEKLHAAFLLSGPDSL DVHLQVRDIT+NPEWE AYQYEIPVL
Sbjct: 45  RKLILYSKPGCCLCDGLKEKLHAAFLLSGPDSLTDVHLQVRDITSNPEWESAYQYEIPVL 104

Query: 108 AKVRSDGSERPIP 167
           AKV SDG+E+ +P
Sbjct: 105 AKVLSDGTEKTLP 117

Query: 168  227
           
Sbjct: 165  117

Query: 228  267
           
Sbjct: 225  117

[Close]

BLAST of MU56220 vs. TrEMBL
Match: A0A067GZI3_CITSI (Glutaredoxin-like protein OS=Citrus sinensis GN=CISIN_1g030511mg PE=3 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 3.2e-29
Identity = 62/73 (84.93%), Postives = 68/73 (93.15%), Query Frame = 3


Query: 48  RKLILYSKPGCCLCDGLKEKLHAAFLLSGPDSLHDVHLQVRDITTNPEWERAYQYEIPVL 107
           RKL+LYSKPGCCLCDGLKEKL AAFLLSGPDSLHDV LQVRDITTNPEWE++YQYEIPVL
Sbjct: 48  RKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQYEIPVL 107

Query: 108 AKVRSDGSERPIP 167
           A+V SDG+E  +P
Sbjct: 108 ARVLSDGTEEALP 120

Query: 168  227
           
Sbjct: 168  120

Query: 228  267
           
Sbjct: 228  120

[Close]

BLAST of MU56220 vs. TrEMBL
Match: C6SXU3_SOYBN (Glutaredoxin-like protein OS=Glycine max GN=GLYMA_06G111500 PE=2 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 3.2e-29
Identity = 63/73 (86.30%), Postives = 67/73 (91.78%), Query Frame = 3


Query: 48  RKLILYSKPGCCLCDGLKEKLHAAFLLSGPDSLHDVHLQVRDITTNPEWERAYQYEIPVL 107
           RKL+LYSKPGCCLCDGLKEKLHAAFLLSG DSLHDV LQ+RDITTNPEWE AYQYEIPVL
Sbjct: 43  RKLVLYSKPGCCLCDGLKEKLHAAFLLSGTDSLHDVDLQIRDITTNPEWENAYQYEIPVL 102

Query: 108 AKVRSDGSERPIP 167
           AKV SDG+E  +P
Sbjct: 103 AKVLSDGTEVALP 115

Query: 168  227
           
Sbjct: 163  115

Query: 228  267
           
Sbjct: 223  115

[Close]

BLAST of MU56220 vs. TAIR10
Match: AT4G08280.1 (AT4G08280.1 Thioredoxin superfamily protein)

HSP 1 Score: 131.0 bits (328), Expect = 6.8e-31
Identity = 63/74 (85.14%), Postives = 64/74 (86.49%), Query Frame = 3


Query: 48  RKLILYSKPGCCLCDGLKEKLHAAFLLS-GPDSLHDVHLQVRDITTNPEWERAYQYEIPV 107
           RKL+LYSKPGCCLCDGLKEKLHAAF LS GPDSL+DV LQVRDITTNPEWERAYQYEIPV
Sbjct: 33  RKLVLYSKPGCCLCDGLKEKLHAAFTLSTGPDSLNDVTLQVRDITTNPEWERAYQYEIPV 92

Query: 108 LAKVRSDGSERPIP 167
           LAK  SDG E  +P
Sbjct: 93  LAKENSDGKEEVLP 106

Query: 168  227
           
Sbjct: 153  106

Query: 228  267
           
Sbjct: 213  106

[Close]

BLAST of MU56220 vs. NCBI nr
Match: gi|659086852|ref|XP_008444143.1| (PREDICTED: uncharacterized protein LOC103487576 isoform X3 [Cucumis melo])

HSP 1 Score: 181.0 bits (458), Expect = 1.6e-42
Identity = 85/96 (88.54%), Postives = 86/96 (89.58%), Query Frame = 3


Query: 3   PILTPXXXXXXXXXXRKLILYSKPGCCLCDGLKEKLHAAFLLSGPDSLHDVHLQVRDITT 62
           PILTP          RKLILYSKPGCCLCDGLKEKLHAAFLLSGPDSLHDVHLQVRDITT
Sbjct: 28  PILTPSASFSSSLPSRKLILYSKPGCCLCDGLKEKLHAAFLLSGPDSLHDVHLQVRDITT 87

Query: 63  NPEWERAYQYEIPVLAKVRSDGSERPIPIETSMWKR 122
           NPEWERAYQYEIPVLAKVRSDGSERPIPI+TSMWKR
Sbjct: 88  NPEWERAYQYEIPVLAKVRSDGSERPIPIDTSMWKR 123

Query: 123  182
           
Sbjct: 148  123

Query: 183  242
           
Sbjct: 208  123

Query: 243  291
           
Sbjct: 268  123

[Close]

BLAST of MU56220 vs. NCBI nr
Match: gi|659086850|ref|XP_008444142.1| (PREDICTED: uncharacterized protein LOC103487576 isoform X2 [Cucumis melo])

HSP 1 Score: 158.3 bits (399), Expect = 1.1e-35
Identity = 75/88 (85.23%), Postives = 76/88 (86.36%), Query Frame = 3


Query: 3   PILTPXXXXXXXXXXRKLILYSKPGCCLCDGLKEKLHAAFLLSGPDSLHDVHLQVRDITT 62
           PILTP          RKLILYSKPGCCLCDGLKEKLHAAFLLSGPDSLHDVHLQVRDITT
Sbjct: 28  PILTPSASFSSSLPSRKLILYSKPGCCLCDGLKEKLHAAFLLSGPDSLHDVHLQVRDITT 87

Query: 63  NPEWERAYQYEIPVLAKVRSDGSERPIP 122
           NPEWERAYQYEIPVLAKVRSDGSE  +P
Sbjct: 88  NPEWERAYQYEIPVLAKVRSDGSEEVLP 115

Query: 123  182
           
Sbjct: 148  115

Query: 183  242
           
Sbjct: 208  115

Query: 243  267
           
Sbjct: 268  115

[Close]

BLAST of MU56220 vs. NCBI nr
Match: gi|778694434|ref|XP_011653807.1| (PREDICTED: uncharacterized protein LOC101215760 [Cucumis sativus])

HSP 1 Score: 156.0 bits (393), Expect = 5.6e-35
Identity = 74/87 (85.06%), Postives = 75/87 (86.21%), Query Frame = 3


Query: 6   ILTPXXXXXXXXXXRKLILYSKPGCCLCDGLKEKLHAAFLLSGPDSLHDVHLQVRDITTN 65
           ILTP          RKLILYSKPGCCLCDGLKEKLHAAFLLSGPDSLHDVHLQVRDITTN
Sbjct: 29  ILTPSASFSSSLPSRKLILYSKPGCCLCDGLKEKLHAAFLLSGPDSLHDVHLQVRDITTN 88

Query: 66  PEWERAYQYEIPVLAKVRSDGSERPIP 125
           PEWERAYQYEIPVLAKVRSDGSE  +P
Sbjct: 89  PEWERAYQYEIPVLAKVRSDGSEEVLP 115

Query: 126  185
           
Sbjct: 149  115

Query: 186  245
           
Sbjct: 209  115

Query: 246  267
           
Sbjct: 269  115

[Close]

BLAST of MU56220 vs. NCBI nr
Match: gi|659086848|ref|XP_008444141.1| (PREDICTED: uncharacterized protein LOC103487576 isoform X1 [Cucumis melo])

HSP 1 Score: 156.0 bits (393), Expect = 5.6e-35
Identity = 74/84 (88.10%), Postives = 74/84 (88.10%), Query Frame = 3


Query: 3   PILTPXXXXXXXXXXRKLILYSKPGCCLCDGLKEKLHAAFLLSGPDSLHDVHLQVRDITT 62
           PILTP          RKLILYSKPGCCLCDGLKEKLHAAFLLSGPDSLHDVHLQVRDITT
Sbjct: 28  PILTPSASFSSSLPSRKLILYSKPGCCLCDGLKEKLHAAFLLSGPDSLHDVHLQVRDITT 87

Query: 63  NPEWERAYQYEIPVLAKVRSDGSE 122
           NPEWERAYQYEIPVLAKVRSDGSE
Sbjct: 88  NPEWERAYQYEIPVLAKVRSDGSE 111

Query: 123  182
           
Sbjct: 148  111

Query: 183  242
           
Sbjct: 208  111

Query: 243  255
           
Sbjct: 268  111

[Close]

BLAST of MU56220 vs. NCBI nr
Match: gi|720053621|ref|XP_010272791.1| (PREDICTED: uncharacterized protein LOC104608479 [Nelumbo nucifera])

HSP 1 Score: 142.5 bits (358), Expect = 6.4e-31
Identity = 61/73 (83.56%), Postives = 70/73 (95.89%), Query Frame = 3


Query: 48  RKLILYSKPGCCLCDGLKEKLHAAFLLSGPDSLHDVHLQVRDITTNPEWERAYQYEIPVL 107
           RKL+LY+KPGCCLCDGLKEKL AAFLL+GPDSLHDVHLQ+RDITTNPEWER+YQYEIPVL
Sbjct: 45  RKLVLYTKPGCCLCDGLKEKLQAAFLLAGPDSLHDVHLQIRDITTNPEWERSYQYEIPVL 104

Query: 108 AKVRSDGSERPIP 167
           A++RSDG+E  +P
Sbjct: 105 ARIRSDGTEETLP 117

Query: 168  227
           
Sbjct: 165  117

Query: 228  267
           
Sbjct: 225  117

The following BLAST results are available for this feature:

BLAST of MU56220 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L383_CUCSA	1.5e-34	85.06	Glutaredoxin-like protein OS=Cucumis sativus GN=Csa_4G365550 PE=3 SV=1	[more]
I3SYL7_LOTJA	2.9e-30	89.04	Glutaredoxin-like protein OS=Lotus japonicus PE=2 SV=1	[more]
I3SRG3_LOTJA	2.9e-30	89.04	Glutaredoxin-like protein OS=Lotus japonicus PE=2 SV=1	[more]
A0A067GZI3_CITSI	3.2e-29	84.93	Glutaredoxin-like protein OS=Citrus sinensis GN=CISIN_1g030511mg PE=3 SV=1	[more]
C6SXU3_SOYBN	3.2e-29	86.30	Glutaredoxin-like protein OS=Glycine max GN=GLYMA_06G111500 PE=2 SV=1	[more]

BLAST of MU56220 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G08280.1	6.8e-31	85.14	Thioredoxin superfamily protein	[more]

BLAST of MU56220 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659086852\|ref\|XP_008444143.1\|	1.6e-42	88.54	PREDICTED: uncharacterized protein LOC103487576 isoform X3 [Cucumis melo]	[more]
gi\|659086850\|ref\|XP_008444142.1\|	1.1e-35	85.23	PREDICTED: uncharacterized protein LOC103487576 isoform X2 [Cucumis melo]	[more]
gi\|778694434\|ref\|XP_011653807.1\|	5.6e-35	85.06	PREDICTED: uncharacterized protein LOC101215760 [Cucumis sativus]	[more]
gi\|659086848\|ref\|XP_008444141.1\|	5.6e-35	88.10	PREDICTED: uncharacterized protein LOC103487576 isoform X1 [Cucumis melo]	[more]
gi\|720053621\|ref\|XP_010272791.1\|	6.4e-31	83.56	PREDICTED: uncharacterized protein LOC104608479 [Nelumbo nucifera]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR008554	Glutaredoxin-like
IPR012336	Thioredoxin-like_fold

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C010470	MELO3C010470	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
46D39G08	46D39G08	EST

InterPro

Analysis Name: InterPro Annotations of melon unigene v4
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008554	Glutaredoxin-like	PFAM	PF05768	DUF836	coord: 18..86 score: 1.1
IPR012336	Thioredoxin-like fold	GENE3D	G3DSA:3.40.30.10		coord: 18..82 score: 6.5
IPR012336	Thioredoxin-like fold	unknown	SSF52833	Thioredoxin-like	coord: 13..77 score: 7.57
None	No IPR available	PANTHER	PTHR33558	FAMILY NOT NAMED	coord: 9..89 score: 2.6