MU56186 (transcribed_cluster) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MU56186
Type	transcribed_cluster
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Translation initiation factor IF-2
Location	chr3 : 26049913 .. 26053524 (+)
Sequence length	709

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

GCTCATCGTCTGCTAAATTGCAGTTAAAAAACGAGAAAAACCATTTTTAATTAGCGAAATATTGATTGATGCTTTTCGTTTTCGGTTTCTTCTACCGTTATTTTTATTTTTATTTTCTATTATTATTGTTATCCTATTCACAAGCAATTCGAAGAATAGAGATTAGATTACCTTCTGTGTAGGAAGAAAGGAAGACGAGAGGAAGAAGAAGAAGATTGATTCTTCTGATAAATCCTCTAAATTAATAAACAGAAAAAGAAAACCCATTATGGTTTCAGACCCCAAGTCCACTCTTTCGAAGCTCAAACCTGATGGCGGCTCCAGGTTAAAGCTTGAATCATCTGATCATAAGAAGAAGATTGACAGCTCCATCAAGAACTCAATTCCCTCTTCCAAGCACAAATCCGTCTCTCTTGTCACCAAATCTGAGGTAAAATCAAAGACAATTTCGAGTTCTTCAAAGACGACAACAAAGACTACAACAACTACTACTGCTACTGCTAAAGTGAGAGAAAAGAAAATCTTTAATTTGCCTGGTCAGAAATATGATCCACCTGAAGAGAGAGAGCCGCTTCGGATCTTCTACGAGTCCTTGTCGAAACAAATACCAGCAAGTGACATGGCAGAGTTTTGGATGATGGAGCATGGCATGTTATCTCCCGAAAAGGCTAAAAAGGCATATGAGAAGAAACTGAGAAGACAAAAGGAA

Library


Library category	ESTs
melon 46d library	1

Homology

[Close]

BLAST of MU56186 vs. TrEMBL
Match: D7SUA5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0008g03410 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 3.5e-24
Identity = 54/63 (85.71%), Postives = 61/63 (96.83%), Query Frame = 2


Query: 521 IFNLPGQKYDPPEEREPLRIFYESLSKQIPASDMAEFWMMEHGMLSPEKAKKAYEKKLRR 580
           ++ LPGQK+DPPEEREPLRIFYESLSKQIP+S+MAEFWMMEHG+LSPEKAKKAYEKK RR
Sbjct: 76  VYTLPGQKHDPPEEREPLRIFYESLSKQIPSSEMAEFWMMEHGLLSPEKAKKAYEKKQRR 135

Query: 581 QKE 640
           QK+
Sbjct: 136 QKQ 138

Query: 641  700
           
Sbjct: 196  138

Query: 701  710
           
Sbjct: 256  138

[Close]

BLAST of MU56186 vs. TrEMBL
Match: A0A067KQR0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07720 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 5.9e-24
Identity = 53/62 (85.48%), Postives = 61/62 (98.39%), Query Frame = 2


Query: 521 IFNLPGQKYDPPEEREPLRIFYESLSKQIPASDMAEFWMMEHGMLSPEKAKKAYEKKLRR 580
           +++LPGQKYDPPEEREPLRIFYESLSKQIP+S+MAEFWMMEHG+LSPE+AKKAYEKK R+
Sbjct: 75  VYSLPGQKYDPPEEREPLRIFYESLSKQIPSSEMAEFWMMEHGLLSPERAKKAYEKKQRK 134

Query: 581 QK 640
           QK
Sbjct: 135 QK 136

Query: 641  700
           
Sbjct: 195  136

Query: 701  707
           
Sbjct: 255  136

[Close]

BLAST of MU56186 vs. TrEMBL
Match: W9RI00_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_010701 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 5.9e-24
Identity = 53/63 (84.13%), Postives = 60/63 (95.24%), Query Frame = 2


Query: 521 IFNLPGQKYDPPEEREPLRIFYESLSKQIPASDMAEFWMMEHGMLSPEKAKKAYEKKLRR 580
           ++ LPGQKYDPPEEREPLRIFYESLSKQIP S+MAEFWMMEHG+LSPEKAKKAYE+K R+
Sbjct: 97  VYTLPGQKYDPPEEREPLRIFYESLSKQIPTSEMAEFWMMEHGLLSPEKAKKAYERKQRK 156

Query: 581 QKE 640
           QK+
Sbjct: 157 QKQ 159

Query: 641  700
           
Sbjct: 217  159

Query: 701  710
           
Sbjct: 277  159

[Close]

BLAST of MU56186 vs. TrEMBL
Match: V4UNE5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009557mg PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 7.7e-24
Identity = 53/63 (84.13%), Postives = 60/63 (95.24%), Query Frame = 2


Query: 521 IFNLPGQKYDPPEEREPLRIFYESLSKQIPASDMAEFWMMEHGMLSPEKAKKAYEKKLRR 580
           +F LPGQK+DPPEEREPLRIFYESLSKQIP S+MAEFWMMEHG+LSPE+AKKAYEKK R+
Sbjct: 78  VFTLPGQKFDPPEEREPLRIFYESLSKQIPTSEMAEFWMMEHGLLSPERAKKAYEKKQRK 137

Query: 581 QKE 640
           QK+
Sbjct: 138 QKQ 140

Query: 641  700
           
Sbjct: 198  140

Query: 701  710
           
Sbjct: 258  140

[Close]

BLAST of MU56186 vs. TrEMBL
Match: A0A067GJL6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029232mg PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 7.7e-24
Identity = 53/63 (84.13%), Postives = 60/63 (95.24%), Query Frame = 2


Query: 521 IFNLPGQKYDPPEEREPLRIFYESLSKQIPASDMAEFWMMEHGMLSPEKAKKAYEKKLRR 580
           +F LPGQK+DPPEEREPLRIFYESLSKQIP S+MAEFWMMEHG+LSPE+AKKAYEKK R+
Sbjct: 78  VFTLPGQKFDPPEEREPLRIFYESLSKQIPTSEMAEFWMMEHGLLSPERAKKAYEKKQRK 137

Query: 581 QKE 640
           QK+
Sbjct: 138 QKQ 140

Query: 641  700
           
Sbjct: 198  140

Query: 701  710
           
Sbjct: 258  140

[Close]

BLAST of MU56186 vs. TAIR10
Match: AT5G11600.1 (AT5G11600.1 unknown protein)

HSP 1 Score: 111.7 bits (278), Expect = 6.2e-25
Identity = 49/63 (77.78%), Postives = 57/63 (90.48%), Query Frame = 2


Query: 521 IFNLPGQKYDPPEEREPLRIFYESLSKQIPASDMAEFWMMEHGMLSPEKAKKAYEKKLRR 580
           +++L GQK+DPPEEREPLRIFYESLSKQIP S+MAEFW+MEHGMLSPEKAK+A+EKK R+
Sbjct: 121 VYSLAGQKFDPPEEREPLRIFYESLSKQIPGSEMAEFWLMEHGMLSPEKAKRAFEKKQRK 180

Query: 581 QKE 640
            K+
Sbjct: 181 MKQ 183

Query: 641  700
           
Sbjct: 241  183

Query: 701  710
           
Sbjct: 301  183

[Close]

BLAST of MU56186 vs. NCBI nr
Match: gi|659088508|ref|XP_008445018.1| (PREDICTED: neurofilament heavy polypeptide [Cucumis melo])

HSP 1 Score: 127.1 bits (318), Expect = 4.1e-26
Identity = 62/63 (98.41%), Postives = 63/63 (100.00%), Query Frame = 2


Query: 521 IFNLPGQKYDPPEEREPLRIFYESLSKQIPASDMAEFWMMEHGMLSPEKAKKAYEKKLRR 580
           IFNLPGQKYDPPEEREPLRIFYESLSKQIPAS+MAEFWMMEHGMLSPEKAKKAYEKKLRR
Sbjct: 85  IFNLPGQKYDPPEEREPLRIFYESLSKQIPASEMAEFWMMEHGMLSPEKAKKAYEKKLRR 144

Query: 581 QKE 640
           QKE
Sbjct: 145 QKE 147

Query: 641  700
           
Sbjct: 205  147

Query: 701  710
           
Sbjct: 265  147

[Close]

BLAST of MU56186 vs. NCBI nr
Match: gi|700207699|gb|KGN62818.1| (hypothetical protein Csa_2G374600 [Cucumis sativus])

HSP 1 Score: 126.7 bits (317), Expect = 5.3e-26
Identity = 61/63 (96.83%), Postives = 63/63 (100.00%), Query Frame = 2


Query: 521 IFNLPGQKYDPPEEREPLRIFYESLSKQIPASDMAEFWMMEHGMLSPEKAKKAYEKKLRR 580
           +FNLPGQKYDPPEEREPLRIFYESLSKQIPAS+MAEFWMMEHGMLSPEKAKKAYEKKLRR
Sbjct: 85  VFNLPGQKYDPPEEREPLRIFYESLSKQIPASEMAEFWMMEHGMLSPEKAKKAYEKKLRR 144

Query: 581 QKE 640
           QKE
Sbjct: 145 QKE 147

Query: 641  700
           
Sbjct: 205  147

Query: 701  710
           
Sbjct: 265  147

[Close]

BLAST of MU56186 vs. NCBI nr
Match: gi|449465141|ref|XP_004150287.1| (PREDICTED: uncharacterized protein LOC101205851 [Cucumis sativus])

HSP 1 Score: 126.7 bits (317), Expect = 5.3e-26
Identity = 61/63 (96.83%), Postives = 63/63 (100.00%), Query Frame = 2


Query: 521 IFNLPGQKYDPPEEREPLRIFYESLSKQIPASDMAEFWMMEHGMLSPEKAKKAYEKKLRR 580
           +FNLPGQKYDPPEEREPLRIFYESLSKQIPAS+MAEFWMMEHGMLSPEKAKKAYEKKLRR
Sbjct: 151 VFNLPGQKYDPPEEREPLRIFYESLSKQIPASEMAEFWMMEHGMLSPEKAKKAYEKKLRR 210

Query: 581 QKE 640
           QKE
Sbjct: 211 QKE 213

Query: 641  700
           
Sbjct: 271  213

Query: 701  710
           
Sbjct: 331  213

[Close]

BLAST of MU56186 vs. NCBI nr
Match: gi|225429940|ref|XP_002283869.1| (PREDICTED: uncharacterized protein LOC100262893 [Vitis vinifera])

HSP 1 Score: 115.5 bits (288), Expect = 1.2e-22
Identity = 54/63 (85.71%), Postives = 61/63 (96.83%), Query Frame = 2


Query: 521 IFNLPGQKYDPPEEREPLRIFYESLSKQIPASDMAEFWMMEHGMLSPEKAKKAYEKKLRR 580
           ++ LPGQK+DPPEEREPLRIFYESLSKQIP+S+MAEFWMMEHG+LSPEKAKKAYEKK RR
Sbjct: 76  VYTLPGQKHDPPEEREPLRIFYESLSKQIPSSEMAEFWMMEHGLLSPEKAKKAYEKKQRR 135

Query: 581 QKE 640
           QK+
Sbjct: 136 QKQ 138

Query: 641  700
           
Sbjct: 196  138

Query: 701  710
           
Sbjct: 256  138

[Close]

BLAST of MU56186 vs. NCBI nr
Match: gi|802633206|ref|XP_012077357.1| (PREDICTED: uncharacterized protein LOC105638198 [Jatropha curcas])

HSP 1 Score: 114.8 bits (286), Expect = 2.1e-22
Identity = 53/62 (85.48%), Postives = 61/62 (98.39%), Query Frame = 2


Query: 521 IFNLPGQKYDPPEEREPLRIFYESLSKQIPASDMAEFWMMEHGMLSPEKAKKAYEKKLRR 580
           +++LPGQKYDPPEEREPLRIFYESLSKQIP+S+MAEFWMMEHG+LSPE+AKKAYEKK R+
Sbjct: 75  VYSLPGQKYDPPEEREPLRIFYESLSKQIPSSEMAEFWMMEHGLLSPERAKKAYEKKQRK 134

Query: 581 QK 640
           QK
Sbjct: 135 QK 136

Query: 641  700
           
Sbjct: 195  136

Query: 701  707
           
Sbjct: 255  136

The following BLAST results are available for this feature:

BLAST of MU56186 vs. TrEMBL


Match Name	E-value	Identity	Description
D7SUA5_VITVI	3.5e-24	85.71	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0008g03410 PE=4 SV=...	[more]
A0A067KQR0_JATCU	5.9e-24	85.48	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07720 PE=4 SV=1	[more]
W9RI00_9ROSA	5.9e-24	84.13	Uncharacterized protein OS=Morus notabilis GN=L484_010701 PE=4 SV=1	[more]
V4UNE5_9ROSI	7.7e-24	84.13	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009557mg PE=4 SV=1	[more]
A0A067GJL6_CITSI	7.7e-24	84.13	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029232mg PE=4 SV=1	[more]

BLAST of MU56186 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G11600.1	6.2e-25	77.78	unknown protein	[more]

BLAST of MU56186 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659088508\|ref\|XP_008445018.1\|	4.1e-26	98.41	PREDICTED: neurofilament heavy polypeptide [Cucumis melo]	[more]
gi\|700207699\|gb\|KGN62818.1\|	5.3e-26	96.83	hypothetical protein Csa_2G374600 [Cucumis sativus]	[more]
gi\|449465141\|ref\|XP_004150287.1\|	5.3e-26	96.83	PREDICTED: uncharacterized protein LOC101205851 [Cucumis sativus]	[more]
gi\|225429940\|ref\|XP_002283869.1\|	1.2e-22	85.71	PREDICTED: uncharacterized protein LOC100262893 [Vitis vinifera]	[more]
gi\|802633206\|ref\|XP_012077357.1\|	2.1e-22	85.48	PREDICTED: uncharacterized protein LOC105638198 [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C011144	MELO3C011144	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
46D37H01	46D37H01	EST

InterPro

Analysis Name: InterPro Annotations of melon unigene v4
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33828	FAMILY NOT NAMED	coord: 18..147 score: 5.8
None	No IPR available	PANTHER	PTHR33828:SF1	SUBFAMILY NOT NAMED	coord: 18..147 score: 5.8