MU53740 (transcribed_cluster) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MU53740
Type	transcribed_cluster
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	F-box family protein
Location	chr11 : 1207205 .. 1207976 (+)
Sequence length	771

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

GGTCCTCTCCGCGGACAAGAACAATTGGCAATCACTCAGGCAACAACTATAGTCAAGGATAGCAGATCCACTAATCGAGAAATGATACTCTCCGGTCCTTGGATACGCCGATTATGTCATAATAGACCTGCGCCTTGTGCAAGAAATCTTGAAACCGCAGTGGTTCACAAATCGCAGGATTCAAAACCAACACTACATCAAGCATTTCCCAGCATAGCTGCTATGGCATTGATGGGCATGACGGTGACTGGGCTTCCGCCATGTGAGTTCATCAGGAGAGGATCTTCTTTAGTTTGGAATAACGAGGGAGTTTGACATCCCCAAGTCTCTCAGGGTTCTGTCACCGTTGATATTTTGGAATCAGATTATCCTATGAAATTGCCTGACCATTATCAACTCAAGTTTGAACTGCTAGAGAGACCACAAATGCTGTTTTAATGATCTGCTAAATTATCATCGACCTCCAGTCGTCTGCTTTGAACCTTAGGGCTAAATTAAGCTTATGGATAAGTTCGTTATACTTCGTACCACTACCTGAATGGAGCCAGAGGAATGTTGTTGGCTCTTTTTACATGATTTTGTGCTCAAGGATTGCTCGTCCGGGACTAAAAGGGAACCCAAGCTATCCACTTATTTGCAGTAAAGAAACAAGCAGGCTCGTTGTATACAATTCTATAGTTTTAAGTGATTTGTATTCTGCGTGGAACCATTAAAAGTGCCGATACTGCATTCCCCTTTCTCAATATATGGTACCACTTTTTGCGTATGGTT

Library


Library category	ESTs
melon A library	1
melon HS library	1

Homology

[Close]

BLAST of MU53740 vs. TrEMBL
Match: A0A0A0LIS2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G248670 PE=4 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 2.3e-45
Identity = 95/109 (87.16%), Postives = 97/109 (88.99%), Query Frame = 1


Query: 1   GPLRG-----QEQLAITQATTIVKDSRSTNREMILSGPWIRRLCHNRPAPCARNLETAVV 60
           GPLRG     QEQL I QATTIVKDSRSTNREMILS PWIRRLCH+RPAPCARNLET VV
Sbjct: 683 GPLRGQEQLGQEQLTIAQATTIVKDSRSTNREMILSSPWIRRLCHDRPAPCARNLETTVV 742

Query: 61  HKSQDSKPTLHQAFPSIAAMALMGMTVTGLPPCEFIRRGSSLVWNNEGV 120
            KSQDSKPTL QAFPSIAAMALMG TVTGLPPCEFIRRGSSLVWNNEG+
Sbjct: 743 RKSQDSKPTLDQAFPSIAAMALMGKTVTGLPPCEFIRRGSSLVWNNEGI 791

Query: 121  180
           
Sbjct: 803  791

Query: 181  240
           
Sbjct: 863  791

Query: 241  300
           
Sbjct: 923  791

Query: 301  313
           
Sbjct: 983  791

[Close]

BLAST of MU53740 vs. TrEMBL
Match: A0A059BDR9_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G01689 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 4.3e-12
Identity = 44/114 (38.60%), Postives = 64/114 (56.14%), Query Frame = 1


Query: 1   GPLRGQEQLAITQATTIVKDSRSTN-------REMILSGPWIRRLCHNRPAPCARNLETA 60
           G    +EQ+A+ Q   + KD  S++       R+ +LS PWI+R C NR A   +  E  
Sbjct: 828 GNCHDKEQMALGQFALLAKDGASSSGGSIGKSRDALLSHPWIQRWCRNRAASLQKKPEAF 887

Query: 61  VVHKSQDSKPTLHQ----AFPSIAAMALMGMTVTGLPPCEFIRRGSSLVWNNEG 120
           V+ +   +K ++ +     FPSIAAMALMG  + G  PCEF  RG+ +VWN +G
Sbjct: 888 VLCEPHGTKASVDEFQKKQFPSIAAMALMGKAMNGFHPCEFRNRGTYVVWNTKG 941

Query: 121  180
           
Sbjct: 948  941

Query: 181  240
           
Sbjct: 1008  941

Query: 241  300
           
Sbjct: 1068  941

Query: 301  310
           
Sbjct: 1128  941

[Close]

BLAST of MU53740 vs. TrEMBL
Match: F6I0L3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0038g04590 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 2.8e-11
Identity = 44/114 (38.60%), Postives = 63/114 (55.26%), Query Frame = 1


Query: 1   GPLRGQEQLAITQATTIVK-------DSRSTNREMILSGPWIRRLCHNRPAPCARNLETA 60
           G   G+E + + Q   +++       DS   ++++ LS  WIRR C NR A   +  +  
Sbjct: 654 GRRHGKEPMELDQTAVLLRNGDSSSIDSLKKSQDITLSHSWIRRWCRNRSATPKKKPDAV 713

Query: 61  VVHKSQDSKPTLHQA----FPSIAAMALMGMTVTGLPPCEFIRRGSSLVWNNEG 120
           VV + Q SK  L +     FPSIAAMALMG  +T   PCEF +RGS +VW+ +G
Sbjct: 714 VVCEPQSSKAALDELQKKQFPSIAAMALMGKAMTSFHPCEFRKRGSLVVWDAKG 767

Query: 121  180
           
Sbjct: 774  767

Query: 181  240
           
Sbjct: 834  767

Query: 241  300
           
Sbjct: 894  767

Query: 301  310
           
Sbjct: 954  767

[Close]

BLAST of MU53740 vs. TrEMBL
Match: A0A067L3J8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26791 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 9.0e-10
Identity = 45/111 (40.54%), Postives = 68/111 (61.26%), Query Frame = 1


Query: 13  GQEQLAITQATTIVK--DSRSTNREM-----ILSGPWIRRLCHNRPAPCARNLETA--VV 72
           G++++ + + T +++  +S ST+ EM      LS PWI+R CH +PA  ++    A  VV
Sbjct: 560 GKQKMFLDETTELLRNAESASTDSEMKCQDITLSHPWIQRWCH-KPAVSSKKKPEAMVVV 619

Query: 73  HKSQDSKPTLHQA----FPSIAAMALMGMTVTGLPPCEFIRRGSSLVWNNE 132
            + Q+SK  L +     FPSIAAMALMG  +TG  PCE  + G+S+VWN +
Sbjct: 620 FEPQNSKGALDELQEKQFPSIAAMALMGKAMTGFGPCELKKLGASVVWNTK 669

Query: 133  192
           
Sbjct: 680  669

Query: 193  252
           
Sbjct: 740  669

Query: 253  307
           
Sbjct: 800  669

[Close]

BLAST of MU53740 vs. TrEMBL
Match: B9RH64_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1447500 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 9.0e-10
Identity = 39/111 (35.14%), Postives = 63/111 (56.76%), Query Frame = 1


Query: 13  GQEQLAITQATTIVKDSRSTN-------REMILSGPWIRRLCHNRPAPCARNLETAVVHK 72
           G++ + + Q + ++++  +++       +E  LS  WIRR CHN+ A      E  VV +
Sbjct: 607 GKQHMVVDQTSDLLRNIEASSAVPVRKIQEATLSHAWIRRWCHNQAALSKAKPEGGVVCE 666

Query: 73  SQDSKPTLH----QAFPSIAAMALMGMTVTGLPPCEFIRRGSSLVWNNEGV 132
            Q+S         + FPS+AAMALMG  + G  PC+F + GS +VWNN+G+
Sbjct: 667 PQNSTANQDNFQKKQFPSLAAMALMGKAMNGFHPCKFRKMGSFIVWNNKGL 717

Query: 133  192
           
Sbjct: 727  717

Query: 193  252
           
Sbjct: 787  717

Query: 253  312
           
Sbjct: 847  717

[Close]

BLAST of MU53740 vs. TAIR10
Match: AT2G16365.1 (AT2G16365.1 F-box family protein)

HSP 1 Score: 49.3 bits (116), Expect = 4.1e-06
Identity = 34/126 (26.98%), Postives = 55/126 (43.65%), Query Frame = 1


Query: 58  DSRSTNREMILSGPWIRRLCHNRPAPCARNLETAVVHKSQDSKPTLHQAFPSIAAMALMG 117
           D R    ++ L  PWI+R C  +     +        + +  K    + +PSIAAMALMG
Sbjct: 370 DLRQGGDDITLLHPWIQRWCKKKTTSTDQPTGQEASFEPESHKEFEKKQYPSIAAMALMG 429

Query: 118 MTVTGLPPCEFIRRGSSLVWNNEGV*HPQVSQGSVTVDILESDYPMKLPDHYQLKFELLE 177
             ++GL P    +  S +VWN   +     +  S+  ++  +D+P+   D  +L    LE
Sbjct: 430 KALSGLNPYGLRKTNSLMVWNARDL---SFTYRSLRWNLTMADWPLLPNDLLELIMGHLE 489

Query: 178 RPQMLF 237
               +F
Sbjct: 490 TSFEIF 492

Query: 238  297
           
Sbjct: 550  492

Query: 298  357
           
Sbjct: 610  492

Query: 358  417
           
Sbjct: 670  492

Query: 418  436
           
Sbjct: 730  492

[Close]

BLAST of MU53740 vs. NCBI nr
Match: gi|659122066|ref|XP_008460952.1| (PREDICTED: uncharacterized protein LOC103499684 isoform X2 [Cucumis melo])

HSP 1 Score: 209.9 bits (533), Expect = 5.2e-51
Identity = 101/104 (97.12%), Postives = 101/104 (97.12%), Query Frame = 1


Query: 1   GPLRGQEQLAITQATTIVKDSRSTNREMILSGPWIRRLCHNRPAPCARNLETAVVHKSQD 60
           GPLRGQEQLAI QATTIVKDSRSTNREMILS PWIRRLCHNRPAPCARNLETAVVHKSQD
Sbjct: 645 GPLRGQEQLAIAQATTIVKDSRSTNREMILSSPWIRRLCHNRPAPCARNLETAVVHKSQD 704

Query: 61  SKPTLHQAFPSIAAMALMGMTVTGLPPCEFIRRGSSLVWNNEGV 120
           SKPTLHQAFPSIAAMALMG TVTGLPPCEFIRRGSSLVWNNEGV
Sbjct: 705 SKPTLHQAFPSIAAMALMGKTVTGLPPCEFIRRGSSLVWNNEGV 748

Query: 121  180
           
Sbjct: 765  748

Query: 181  240
           
Sbjct: 825  748

Query: 241  300
           
Sbjct: 885  748

Query: 301  313
           
Sbjct: 945  748

[Close]

BLAST of MU53740 vs. NCBI nr
Match: gi|659122068|ref|XP_008460953.1| (PREDICTED: uncharacterized protein LOC103499684 isoform X3 [Cucumis melo])

HSP 1 Score: 209.9 bits (533), Expect = 5.2e-51
Identity = 101/104 (97.12%), Postives = 101/104 (97.12%), Query Frame = 1


Query: 1   GPLRGQEQLAITQATTIVKDSRSTNREMILSGPWIRRLCHNRPAPCARNLETAVVHKSQD 60
           GPLRGQEQLAI QATTIVKDSRSTNREMILS PWIRRLCHNRPAPCARNLETAVVHKSQD
Sbjct: 621 GPLRGQEQLAIAQATTIVKDSRSTNREMILSSPWIRRLCHNRPAPCARNLETAVVHKSQD 680

Query: 61  SKPTLHQAFPSIAAMALMGMTVTGLPPCEFIRRGSSLVWNNEGV 120
           SKPTLHQAFPSIAAMALMG TVTGLPPCEFIRRGSSLVWNNEGV
Sbjct: 681 SKPTLHQAFPSIAAMALMGKTVTGLPPCEFIRRGSSLVWNNEGV 724

Query: 121  180
           
Sbjct: 741  724

Query: 181  240
           
Sbjct: 801  724

Query: 241  300
           
Sbjct: 861  724

Query: 301  313
           
Sbjct: 921  724

[Close]

BLAST of MU53740 vs. NCBI nr
Match: gi|659122064|ref|XP_008460951.1| (PREDICTED: uncharacterized protein LOC103499684 isoform X1 [Cucumis melo])

HSP 1 Score: 209.9 bits (533), Expect = 5.2e-51
Identity = 101/104 (97.12%), Postives = 101/104 (97.12%), Query Frame = 1


Query: 1   GPLRGQEQLAITQATTIVKDSRSTNREMILSGPWIRRLCHNRPAPCARNLETAVVHKSQD 60
           GPLRGQEQLAI QATTIVKDSRSTNREMILS PWIRRLCHNRPAPCARNLETAVVHKSQD
Sbjct: 683 GPLRGQEQLAIAQATTIVKDSRSTNREMILSSPWIRRLCHNRPAPCARNLETAVVHKSQD 742

Query: 61  SKPTLHQAFPSIAAMALMGMTVTGLPPCEFIRRGSSLVWNNEGV 120
           SKPTLHQAFPSIAAMALMG TVTGLPPCEFIRRGSSLVWNNEGV
Sbjct: 743 SKPTLHQAFPSIAAMALMGKTVTGLPPCEFIRRGSSLVWNNEGV 786

Query: 121  180
           
Sbjct: 803  786

Query: 181  240
           
Sbjct: 863  786

Query: 241  300
           
Sbjct: 923  786

Query: 301  313
           
Sbjct: 983  786

[Close]

BLAST of MU53740 vs. NCBI nr
Match: gi|778669366|ref|XP_011649234.1| (PREDICTED: uncharacterized protein LOC101215624 [Cucumis sativus])

HSP 1 Score: 191.8 bits (486), Expect = 1.5e-45
Identity = 95/109 (87.16%), Postives = 97/109 (88.99%), Query Frame = 1


Query: 1   GPLRG-----QEQLAITQATTIVKDSRSTNREMILSGPWIRRLCHNRPAPCARNLETAVV 60
           GPLRG     QEQL I QATTIVKDSRSTNREMILS PWIRRLCH+RPAPCARNLET VV
Sbjct: 628 GPLRGQEQLGQEQLTIAQATTIVKDSRSTNREMILSSPWIRRLCHDRPAPCARNLETTVV 687

Query: 61  HKSQDSKPTLHQAFPSIAAMALMGMTVTGLPPCEFIRRGSSLVWNNEGV 120
            KSQDSKPTL QAFPSIAAMALMG TVTGLPPCEFIRRGSSLVWNNEG+
Sbjct: 688 RKSQDSKPTLDQAFPSIAAMALMGKTVTGLPPCEFIRRGSSLVWNNEGI 736

Query: 121  180
           
Sbjct: 748  736

Query: 181  240
           
Sbjct: 808  736

Query: 241  300
           
Sbjct: 868  736

Query: 301  313
           
Sbjct: 928  736

[Close]

BLAST of MU53740 vs. NCBI nr
Match: gi|700206691|gb|KGN61810.1| (hypothetical protein Csa_2G248670 [Cucumis sativus])

HSP 1 Score: 191.8 bits (486), Expect = 1.5e-45
Identity = 95/109 (87.16%), Postives = 97/109 (88.99%), Query Frame = 1


Query: 1   GPLRG-----QEQLAITQATTIVKDSRSTNREMILSGPWIRRLCHNRPAPCARNLETAVV 60
           GPLRG     QEQL I QATTIVKDSRSTNREMILS PWIRRLCH+RPAPCARNLET VV
Sbjct: 683 GPLRGQEQLGQEQLTIAQATTIVKDSRSTNREMILSSPWIRRLCHDRPAPCARNLETTVV 742

Query: 61  HKSQDSKPTLHQAFPSIAAMALMGMTVTGLPPCEFIRRGSSLVWNNEGV 120
            KSQDSKPTL QAFPSIAAMALMG TVTGLPPCEFIRRGSSLVWNNEG+
Sbjct: 743 RKSQDSKPTLDQAFPSIAAMALMGKTVTGLPPCEFIRRGSSLVWNNEGI 791

Query: 121  180
           
Sbjct: 803  791

Query: 181  240
           
Sbjct: 863  791

Query: 241  300
           
Sbjct: 923  791

Query: 301  313
           
Sbjct: 983  791

The following BLAST results are available for this feature:

BLAST of MU53740 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LIS2_CUCSA	2.3e-45	87.16	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G248670 PE=4 SV=1	[more]
A0A059BDR9_EUCGR	4.3e-12	38.60	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G01689 PE=4 SV=1	[more]
F6I0L3_VITVI	2.8e-11	38.60	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0038g04590 PE=4 SV=...	[more]
A0A067L3J8_JATCU	9.0e-10	40.54	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26791 PE=4 SV=1	[more]
B9RH64_RICCO	9.0e-10	35.14	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1447500 PE=4 SV=1	[more]

BLAST of MU53740 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G16365.1	4.1e-06	26.98	F-box family protein	[more]

BLAST of MU53740 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659122066\|ref\|XP_008460952.1\|	5.2e-51	97.12	PREDICTED: uncharacterized protein LOC103499684 isoform X2 [Cucumis melo]	[more]
gi\|659122068\|ref\|XP_008460953.1\|	5.2e-51	97.12	PREDICTED: uncharacterized protein LOC103499684 isoform X3 [Cucumis melo]	[more]
gi\|659122064\|ref\|XP_008460951.1\|	5.2e-51	97.12	PREDICTED: uncharacterized protein LOC103499684 isoform X1 [Cucumis melo]	[more]
gi\|778669366\|ref\|XP_011649234.1\|	1.5e-45	87.16	PREDICTED: uncharacterized protein LOC101215624 [Cucumis sativus]	[more]
gi\|700206691\|gb\|KGN61810.1\|	1.5e-45	87.16	hypothetical protein Csa_2G248670 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C023308	MELO3C023308	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
A25C10	A25C10	EST
HS12H02	HS12H02	EST

InterPro

Analysis Name: InterPro Annotations of melon unigene v4
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36062	FAMILY NOT NAMED	coord: 25..104 score: 1.7
None	No IPR available	PANTHER	PTHR36062:SF1	SUBFAMILY NOT NAMED	coord: 25..104 score: 1.7