MU52925 (transcribed_cluster) Melon (DHL92) v3.5.1

NameMU52925
Typetranscribed_cluster
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionDNA-directed RNA polymerases I and III subunit RPAC2
Locationchr12 : 1256498 .. 1259802 (-)
Sequence length596
The following sequences are available for this feature:

transcribed_cluster sequence

GCCCAATCCCTTTAGCGCATTCAATCCCCCTTCGACAGTTCGACGTTCACATTTCGGCGATAAGATTCCGGCGACCTTTACATTCCGCCGCCGGCCTTTGCACATTTAGATCGTAAGTTCGACGGCACGATTCGCCTTTACACGTTCCAATCGCAAGTTCGACTGCACGTTCAGATCGCAAGTTCGACGGACTTCACATTTTGGGTTCTTCATCTTGTGTTGTCGGGTTCTTCATCTTGTTTTGTCCAAGCAATGGAACATGGATCCTTTACAGATGAGACCAAATCAACATTTTCTATGGCTGATGAAGATCATACACTTGCAAATGCTCTCAGATACACTTTGAATCAAGAGTAGGAGCTCTTATTCAGTTATTCTTGAGTGAATACTTTGAAATGTCAACGCTCATTTTTTTTAACCATTTCATCTTGCTATTAATTCATGACATTAATAATTAAGTAGATTCTTGGTTCTTGTGAACATATAATTCACAAGGTCCTTAAAGAATTATTTAGGTTCTTGGATAATCCATGAGGCATAAATTGATAAATAATGTACAGCCATTGCATGCGTTAATGTGCGTTCTTTCATTGTCC
Library categoryESTs
melon MNR09P2 library2
BLAST of MU52925 vs. TrEMBL
Match: A0A0A0LUT5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G095010 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 5.9e-09
Identity = 32/39 (82.05%), Postives = 35/39 (89.74%), Query Frame = 1

Query: 253 MEHGSFTDETKSTFSMADEDHTLANALRYTLNQE*ELLF 312
           MEHGSFTDETKSTFS+ADEDHTLAN LRYTLNQ+  + F
Sbjct: 1   MEHGSFTDETKSTFSVADEDHTLANTLRYTLNQDPRVTF 39

Query: 313 370
           
Sbjct: 61  39

BLAST of MU52925 vs. TrEMBL
Match: A0A0A0LV21_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G527910 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 7.7e-09
Identity = 33/39 (84.62%), Postives = 35/39 (89.74%), Query Frame = 1

Query: 253 MEHGSFTDETKSTFSMADEDHTLANALRYTLNQE*ELLF 312
           MEHGSFTDETKSTFSMADEDHTLANALR TLNQ+  + F
Sbjct: 1   MEHGSFTDETKSTFSMADEDHTLANALRCTLNQDPRVTF 39

Query: 313 370
           
Sbjct: 61  39

BLAST of MU52925 vs. TrEMBL
Match: W9QP58_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_006039 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 3.2e-07
Identity = 28/40 (70.00%), Postives = 35/40 (87.50%), Query Frame = 1

Query: 253 MEHGSFTDETKSTFSMADEDHTLANALRYTLNQE*ELLFS 312
           MEHGSF+D TKSTFS+ DEDHTLANA+R++LNQ+  + FS
Sbjct: 1   MEHGSFSDHTKSTFSLTDEDHTLANAVRFSLNQDPRVTFS 40

Query: 313 372
           
Sbjct: 61  40

BLAST of MU52925 vs. TrEMBL
Match: K7MV80_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_18G281100 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 5.5e-07
Identity = 27/40 (67.50%), Postives = 35/40 (87.50%), Query Frame = 1

Query: 250 AMEHGSFTDETKSTFSMADEDHTLANALRYTLNQE*ELLF 309
           AMEHGS+TD++KSTFS+ DEDHT ANA+R+TLNQ+  + F
Sbjct: 28  AMEHGSYTDQSKSTFSLVDEDHTFANAVRFTLNQDPRVSF 67

Query: 310 369
           
Sbjct: 88  67

BLAST of MU52925 vs. TrEMBL
Match: A0A0B2PXJ1_GLYSO (DNA-directed RNA polymerases I and III subunit RPAC2 OS=Glycine soja GN=glysoja_016099 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 5.5e-07
Identity = 27/40 (67.50%), Postives = 35/40 (87.50%), Query Frame = 1

Query: 250 AMEHGSFTDETKSTFSMADEDHTLANALRYTLNQE*ELLF 309
           AMEHGS+TD++KSTFS+ DEDHT ANA+R+TLNQ+  + F
Sbjct: 258 AMEHGSYTDQSKSTFSLVDEDHTFANAVRFTLNQDPRVSF 297

Query: 310 369
           
Sbjct: 318 297

BLAST of MU52925 vs. NCBI nr
Match: gi|659115158|ref|XP_008457416.1| (PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2 [Cucumis melo])

HSP 1 Score: 72.0 bits (175), Expect = 1.3e-09
Identity = 34/39 (87.18%), Postives = 36/39 (92.31%), Query Frame = 1

Query: 253 MEHGSFTDETKSTFSMADEDHTLANALRYTLNQE*ELLF 312
           MEHGSFTDETKSTFSMADEDHTLANALRYTLNQ+  + F
Sbjct: 1   MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTF 39

Query: 313 370
           
Sbjct: 61  39

BLAST of MU52925 vs. NCBI nr
Match: gi|778659017|ref|XP_004147276.2| (PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2 [Cucumis sativus])

HSP 1 Score: 68.9 bits (167), Expect = 1.1e-08
Identity = 32/39 (82.05%), Postives = 35/39 (89.74%), Query Frame = 1

Query: 253 MEHGSFTDETKSTFSMADEDHTLANALRYTLNQE*ELLF 312
           MEHGSFTDETKSTFS+ADEDHTLAN LRYTLNQ+  + F
Sbjct: 1   MEHGSFTDETKSTFSVADEDHTLANTLRYTLNQDPRVTF 39

Query: 313 370
           
Sbjct: 61  39

BLAST of MU52925 vs. NCBI nr
Match: gi|449455052|ref|XP_004145267.1| (PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2 [Cucumis sativus])

HSP 1 Score: 68.6 bits (166), Expect = 1.4e-08
Identity = 33/39 (84.62%), Postives = 35/39 (89.74%), Query Frame = 1

Query: 253 MEHGSFTDETKSTFSMADEDHTLANALRYTLNQE*ELLF 312
           MEHGSFTDETKSTFSMADEDHTLANALR TLNQ+  + F
Sbjct: 1   MEHGSFTDETKSTFSMADEDHTLANALRCTLNQDPRVTF 39

Query: 313 370
           
Sbjct: 61  39

BLAST of MU52925 vs. NCBI nr
Match: gi|703067178|ref|XP_010087903.1| (hypothetical protein L484_006039 [Morus notabilis])

HSP 1 Score: 63.2 bits (152), Expect = 6.1e-07
Identity = 28/40 (70.00%), Postives = 35/40 (87.50%), Query Frame = 1

Query: 253 MEHGSFTDETKSTFSMADEDHTLANALRYTLNQE*ELLFS 312
           MEHGSF+D TKSTFS+ DEDHTLANA+R++LNQ+  + FS
Sbjct: 1   MEHGSFSDHTKSTFSLTDEDHTLANAVRFSLNQDPRVTFS 40

Query: 313 372
           
Sbjct: 61  40

BLAST of MU52925 vs. NCBI nr
Match: gi|947051972|gb|KRH01501.1| (hypothetical protein GLYMA_18G281100 [Glycine max])

HSP 1 Score: 62.4 bits (150), Expect = 1.0e-06
Identity = 27/40 (67.50%), Postives = 35/40 (87.50%), Query Frame = 1

Query: 250 AMEHGSFTDETKSTFSMADEDHTLANALRYTLNQE*ELLF 309
           AMEHGS+TD++KSTFS+ DEDHT ANA+R+TLNQ+  + F
Sbjct: 28  AMEHGSYTDQSKSTFSLVDEDHTFANAVRFTLNQDPRVSF 67

Query: 310 369
           
Sbjct: 88  67

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0LUT5_CUCSA5.9e-0982.05Uncharacterized protein OS=Cucumis sativus GN=Csa_1G095010 PE=4 SV=1[more]
A0A0A0LV21_CUCSA7.7e-0984.62Uncharacterized protein OS=Cucumis sativus GN=Csa_1G527910 PE=4 SV=1[more]
W9QP58_9ROSA3.2e-0770.00Uncharacterized protein OS=Morus notabilis GN=L484_006039 PE=4 SV=1[more]
K7MV80_SOYBN5.5e-0767.50Uncharacterized protein OS=Glycine max GN=GLYMA_18G281100 PE=4 SV=1[more]
A0A0B2PXJ1_GLYSO5.5e-0767.50DNA-directed RNA polymerases I and III subunit RPAC2 OS=Glycine soja GN=glysoja_... [more]
Match NameE-valueIdentityDescription
gi|659115158|ref|XP_008457416.1|1.3e-0987.18PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2 [Cucumis melo][more]
gi|778659017|ref|XP_004147276.2|1.1e-0882.05PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2 [Cucumis sativus... [more]
gi|449455052|ref|XP_004145267.1|1.4e-0884.62PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2 [Cucumis sativus... [more]
gi|703067178|ref|XP_010087903.1|6.1e-0770.00hypothetical protein L484_006039 [Morus notabilis][more]
gi|947051972|gb|KRH01501.1|1.0e-0667.50hypothetical protein GLYMA_18G281100 [Glycine max][more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
MELO3C020585MELO3C020585gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
CA17YO23FM1CA17YO23FM1EST
CA21YO12FM1CA21YO12FM1EST