MU52424 (transcribed_cluster) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MU52424
Type	transcribed_cluster
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Leucine-rich repeat protein kinase
Location	chr11 : 6981729 .. 6983318 (-)
Sequence length	686

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

ACGGGTTGGGCCCTCAAAATCTTCCATTCTGTCTGCCGATTTGTCTCCCTCGTGGTTCTCCTTCAACCCGTGTTAATCCATCTCATTCAACCCGTGTTCCCATTTGATCCCTCCTTCCCCTTCGATTCCGATTTCACTTCTTCTTTCTTCTTTCTTTTTCTTCTTCTTTCTCCCTATTTCCCTTCGATTCCGATTTCACTTCCTTTTGGTTGCGGTTTGATCTTTGATTTTGATTTCGATTTCGATTTTGATTTATGAGGAGAAGGCAGGTGACTTGGGTCTCGGAGAGCTGATTGATGGCGACGATTCGAGTGTGGGTCAAATTTTTCATTGTAATGTTAACCCCACTTCTCAAAGTTAACTGGTACAATCTCTGCAAGCTTGGGACGTTTGGACTTGTTAGTGAGAGTGGACTTGAGCTCCAATCATCTGTTTGGTTTCGTTCCTTGAAGGCTTGCTGATGCGCCTTCGCTTGAAGTTCTTGATGTTTGAAACAATACCCTCTCTGGCAATGTACCTCCTGGTACCAATTGATCTTTAAACCATTTTATAAGGAAGATGTACTTATTTTTTGTGTTCTGTTCATTTTTGTTTTCTTTTACATGAAACTAACTAGAACATTGTTTTGCTTTTGTGTTGGATCTGATGAAGCTTTGATGAGACTTAATGAAGGATTCTTGCATGCT

Library


Library category	ESTs
melon VFLP2 library	2

Homology

[Close]

BLAST of MU52424 vs. TrEMBL
Match: A0A0A0KN99_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G171130 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.8e-09
Identity = 38/57 (66.67%), Postives = 40/57 (70.18%), Query Frame = 1


Query: 352 SKLTGTISASLGXXXXXXXXXXXXNHLFGFVP*RLADAPSLEVLDV*NNTLSGNVPP 411
           ++LTG I ASLG            NHLFG VP RLADAPSLEVLDV NNTLSGNVPP
Sbjct: 173 NQLTGAIPASLGRLDLLVRVDLSSNHLFGSVPSRLADAPSLEVLDVRNNTLSGNVPP 229

Query: 412  471
           
Sbjct: 233  229

Query: 472  523
           
Sbjct: 293  229

[Close]

BLAST of MU52424 vs. TrEMBL
Match: M5X581_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa002373mg PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.3e-07
Identity = 34/56 (60.71%), Postives = 38/56 (67.86%), Query Frame = 1


Query: 352 SKLTGTISASLGXXXXXXXXXXXXNHLFGFVP*RLADAPSLEVLDV*NNTLSGNVP 411
           ++LTG I ASLG            NHLFG +P +LADAP LEVLDV NNTLSGNVP
Sbjct: 172 NRLTGAIPASLGDLEMLMRLDLSVNHLFGSIPTKLADAPVLEVLDVRNNTLSGNVP 227

Query: 412  471
           
Sbjct: 232  227

Query: 472  520
           
Sbjct: 292  227

[Close]

BLAST of MU52424 vs. TrEMBL
Match: M5X581_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa002373mg PE=4 SV=1)

HSP 1 Score: 29.6 bits (65), Expect = 6.0e+03
Identity = 16/55 (29.09%), Postives = 26/55 (47.27%), Query Frame = 1


Query: 358 LTGTISASLGXXXXXXXXXXXXNHLFGFVP*RLADAPSLEVLDV*NNTLSGNVPP 417
           L+G +S ++             N L+G +P  +A+   L  L +  N LSG +PP
Sbjct: 78  LSGKLSPAIAGLKHLTGLYMHYNSLYGEIPREIANLTELSDLYLNVNNLSGEIPP 132

Query: 418  477
           
Sbjct: 138  132

Query: 478  523
           
Sbjct: 198  132

HSP 2 Score: 63.9 bits (154), Expect = 2.8e-07
Identity = 32/57 (56.14%), Postives = 39/57 (68.42%), Query Frame = 1


Query: 352 SKLTGTISASLGXXXXXXXXXXXXNHLFGFVP*RLADAPSLEVLDV*NNTLSGNVPP 411
           ++LTG I A+LG            NHLFG +P +LADAP LEVLD+ NNTLSG+VPP
Sbjct: 169 NQLTGAIPANLGDLGMLMRLDLSFNHLFGSIPRKLADAPLLEVLDIRNNTLSGSVPP 225

Query: 412  471
           
Sbjct: 229  225

Query: 472  523
           
Sbjct: 289  225

[Close]

BLAST of MU52424 vs. TrEMBL
Match: V4U6U9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10004478mg PE=4 SV=1)

HSP 1 Score: 30.0 bits (66), Expect = 4.6e+03
Identity = 16/55 (29.09%), Postives = 26/55 (47.27%), Query Frame = 1


Query: 358 LTGTISASLGXXXXXXXXXXXXNHLFGFVP*RLADAPSLEVLDV*NNTLSGNVPP 417
           L G +S ++             N L+G +P  +A+   L  L +  N LSG++PP
Sbjct: 75  LNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPP 129

Query: 418  477
           
Sbjct: 135  129

Query: 478  523
           
Sbjct: 195  129

HSP 2 Score: 63.9 bits (154), Expect = 2.8e-07
Identity = 32/57 (56.14%), Postives = 39/57 (68.42%), Query Frame = 1


Query: 352 SKLTGTISASLGXXXXXXXXXXXXNHLFGFVP*RLADAPSLEVLDV*NNTLSGNVPP 411
           ++LTG I A+LG            NHLFG +P +LADAP LEVLD+ NNTLSG+VPP
Sbjct: 169 NQLTGAIPANLGDLGMLMRLDLSFNHLFGSIPRKLADAPLLEVLDIRNNTLSGSVPP 225

Query: 412  471
           
Sbjct: 229  225

Query: 472  523
           
Sbjct: 289  225

[Close]

BLAST of MU52424 vs. TrEMBL
Match: A0A067FDH6_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g044913mg PE=4 SV=1)

HSP 1 Score: 30.0 bits (66), Expect = 4.6e+03
Identity = 16/55 (29.09%), Postives = 26/55 (47.27%), Query Frame = 1


Query: 358 LTGTISASLGXXXXXXXXXXXXNHLFGFVP*RLADAPSLEVLDV*NNTLSGNVPP 417
           L G +S ++             N L+G +P  +A+   L  L +  N LSG++PP
Sbjct: 75  LNGKVSPAIAGLKHLTGLYLHYNSLYGQIPREIANLTELSDLYLNVNNLSGDIPP 129

Query: 418  477
           
Sbjct: 135  129

Query: 478  523
           
Sbjct: 195  129

HSP 2 Score: 61.6 bits (148), Expect = 1.4e-06
Identity = 32/57 (56.14%), Postives = 37/57 (64.91%), Query Frame = 1


Query: 352 SKLTGTISASLGXXXXXXXXXXXXNHLFGFVP*RLADAPSLEVLDV*NNTLSGNVPP 411
           ++LTG I ASLG            N LFG +P ++AD P LEVLDV NNTLSGNVPP
Sbjct: 184 NQLTGAIPASLGDLGTLTRLYLSFNRLFGSIPMKIADLPLLEVLDVQNNTLSGNVPP 240

Query: 412  471
           
Sbjct: 244  240

Query: 472  523
           
Sbjct: 304  240

[Close]

BLAST of MU52424 vs. TAIR10
Match: AT5G51560.1 (AT5G51560.1 Leucine-rich repeat protein kinase family protein)

HSP 1 Score: 60.1 bits (144), Expect = 2.1e-09
Identity = 31/57 (54.39%), Postives = 35/57 (61.40%), Query Frame = 1


Query: 352 SKLTGTISASLGXXXXXXXXXXXXNHLFGFVP*RLADAPSLEVLDV*NNTLSGNVPP 411
           +KLTG I ASLG            NHLFG VP +LA  P L VLD+ NN+L+GNVPP
Sbjct: 177 NKLTGAIPASLGDLSALERLDLSYNHLFGSVPGKLASPPLLRVLDIRNNSLTGNVPP 233

Query: 412  471
           
Sbjct: 237  233

Query: 472  523
           
Sbjct: 297  233

[Close]

BLAST of MU52424 vs. TAIR10
Match: AT2G45340.1 (AT2G45340.1 Leucine-rich repeat protein kinase family protein)

HSP 1 Score: 51.6 bits (122), Expect = 7.4e-07
Identity = 28/57 (49.12%), Postives = 34/57 (59.65%), Query Frame = 1


Query: 349 FSKLTGTISASLGXXXXXXXXXXXXNHLFGFVP*RLADAPSLEVLDV*NNTLSGNVP 408
           +++L+G I ASLG            N+LFG VP +LA AP LEVLD+ NN+ SG VP
Sbjct: 173 YNQLSGAIPASLGDIDTLTRLDLSFNNLFGPVPVKLAGAPLLEVLDIRNNSFSGFVP 229

Query: 409  468
           
Sbjct: 233  229

Query: 469  520
           
Sbjct: 293  229

HSP 2 Score: 34.7 bits (78), Expect = 9.4e-02
Identity = 20/55 (36.36%), Postives = 25/55 (45.45%), Query Frame = 1


Query: 358 LTGTISASLGXXXXXXXXXXXXNHLFGFVP*RLADAPSLEVLDV*NNTLSGNVPP 417
           LTGTI  S+G            N L G +P  +++ P L  L +  N LSG +PP
Sbjct: 80  LTGTIPPSIGLLTSLTGLYLHFNSLTGHIPKDISNLPLLTDLYLNVNNLSGEIPP 134

Query: 418  477
           
Sbjct: 140  134

Query: 478  523
           
Sbjct: 200  134

[Close]

BLAST of MU52424 vs. TAIR10
Match: AT4G22730.1 (AT4G22730.1 Leucine-rich repeat protein kinase family protein)

HSP 1 Score: 50.8 bits (120), Expect = 1.3e-06
Identity = 26/58 (44.83%), Postives = 32/58 (55.17%), Query Frame = 1


Query: 352 SKLTGTISASLGXXXXXXXXXXXXNHLFGFVP*RLADAPSLEVLDV*NNTLSGNVPPG 411
           +KLTG +  +LG            N+L G +P  LA+ P L+ LD+ NNTLSG VPPG
Sbjct: 174 NKLTGEVPWTLGNLSMLSRLDLSFNNLLGLIPKTLANIPQLDTLDLRNNTLSGFVPPG 231

Query: 412  471
           
Sbjct: 234  231

Query: 472  526
           
Sbjct: 294  231

[Close]

BLAST of MU52424 vs. NCBI nr
Match: gi|778700478|ref|XP_004143652.2| (PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Cucumis sativus])

HSP 1 Score: 75.1 bits (183), Expect = 1.8e-10
Identity = 38/57 (66.67%), Postives = 40/57 (70.18%), Query Frame = 1


Query: 352 SKLTGTISASLGXXXXXXXXXXXXNHLFGFVP*RLADAPSLEVLDV*NNTLSGNVPP 411
           ++LTG I ASLG            NHLFG VP RLADAPSLEVLDV NNTLSGNVPP
Sbjct: 173 NQLTGAIPASLGRLDLLVRVDLSSNHLFGSVPSRLADAPSLEVLDVRNNTLSGNVPP 229

Query: 412  471
           
Sbjct: 233  229

Query: 472  523
           
Sbjct: 293  229

[Close]

BLAST of MU52424 vs. NCBI nr
Match: gi|659073142|ref|XP_008467276.1| (PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 [Cucumis melo])

HSP 1 Score: 75.1 bits (183), Expect = 1.8e-10
Identity = 38/57 (66.67%), Postives = 40/57 (70.18%), Query Frame = 1


Query: 352 SKLTGTISASLGXXXXXXXXXXXXNHLFGFVP*RLADAPSLEVLDV*NNTLSGNVPP 411
           ++LTG I ASLG            NHLFG VP RLADAPSLEVLDV NNTLSGNVPP
Sbjct: 173 NQLTGAIPASLGRLDLLVRVDLSSNHLFGSVPSRLADAPSLEVLDVRNNTLSGNVPP 229

Query: 412  471
           
Sbjct: 233  229

Query: 472  523
           
Sbjct: 293  229

[Close]

BLAST of MU52424 vs. NCBI nr
Match: gi|645257328|ref|XP_008234364.1| (PREDICTED: somatic embryogenesis receptor kinase 4 [Prunus mume])

HSP 1 Score: 68.9 bits (167), Expect = 1.3e-08
Identity = 34/56 (60.71%), Postives = 38/56 (67.86%), Query Frame = 1


Query: 352 SKLTGTISASLGXXXXXXXXXXXXNHLFGFVP*RLADAPSLEVLDV*NNTLSGNVP 411
           ++LTG I ASLG            NHLFG +P +LADAP LEVLDV NNTLSGNVP
Sbjct: 172 NRLTGAIPASLGDLEMLMRLDLSVNHLFGSIPTKLADAPVLEVLDVRNNTLSGNVP 227

Query: 412  471
           
Sbjct: 232  227

Query: 472  520
           
Sbjct: 292  227

[Close]

BLAST of MU52424 vs. NCBI nr
Match: gi|596040804|ref|XP_007220018.1| (hypothetical protein PRUPE_ppa002373mg [Prunus persica])

HSP 1 Score: 68.9 bits (167), Expect = 1.3e-08
Identity = 34/56 (60.71%), Postives = 38/56 (67.86%), Query Frame = 1


Query: 352 SKLTGTISASLGXXXXXXXXXXXXNHLFGFVP*RLADAPSLEVLDV*NNTLSGNVP 411
           ++LTG I ASLG            NHLFG +P +LADAP LEVLDV NNTLSGNVP
Sbjct: 172 NRLTGAIPASLGDLEMLMRLDLSVNHLFGSIPTKLADAPVLEVLDVRNNTLSGNVP 227

Query: 412  471
           
Sbjct: 232  227

Query: 472  520
           
Sbjct: 292  227

[Close]

BLAST of MU52424 vs. NCBI nr
Match: gi|657969473|ref|XP_008376456.1| (PREDICTED: somatic embryogenesis receptor kinase 1 [Malus domestica])

HSP 1 Score: 68.6 bits (166), Expect = 1.7e-08
Identity = 34/56 (60.71%), Postives = 38/56 (67.86%), Query Frame = 1


Query: 352 SKLTGTISASLGXXXXXXXXXXXXNHLFGFVP*RLADAPSLEVLDV*NNTLSGNVP 411
           ++LTG I ASLG            NHLFG +P +LADAP LEVLDV NNTLSGNVP
Sbjct: 172 NQLTGAIPASLGDLEMLMRLDLSVNHLFGSIPTKLADAPVLEVLDVRNNTLSGNVP 227

Query: 412  471
           
Sbjct: 232  227

Query: 472  520
           
Sbjct: 292  227

The following BLAST results are available for this feature:

BLAST of MU52424 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KN99_CUCSA	1.8e-09	66.67	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G171130 PE=4 SV=1	[more]
M5X581_PRUPE	1.3e-07	60.71	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa002373mg PE=4 SV=1	[more]
M5X581_PRUPE	6.0e+03	29.09	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa002373mg PE=4 SV=1	[more]
V4U6U9_9ROSI	4.6e+03	29.09	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10004478mg PE=4 SV=1	[more]
A0A067FDH6_CITSI	4.6e+03	29.09	Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g044913mg PE=4 S...	[more]

BLAST of MU52424 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G51560.1	2.1e-09	54.39	Leucine-rich repeat protein kinase family protein	[more]
AT2G45340.1	7.4e-07	49.12	Leucine-rich repeat protein kinase family protein	[more]
AT4G22730.1	1.3e-06	44.83	Leucine-rich repeat protein kinase family protein	[more]

BLAST of MU52424 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778700478\|ref\|XP_004143652.2\|	1.8e-10	66.67	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 ...	[more]
gi\|659073142\|ref\|XP_008467276.1\|	1.8e-10	66.67	PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 [Cucumis m...	[more]
gi\|645257328\|ref\|XP_008234364.1\|	1.3e-08	60.71	PREDICTED: somatic embryogenesis receptor kinase 4 [Prunus mume]	[more]
gi\|596040804\|ref\|XP_007220018.1\|	1.3e-08	60.71	hypothetical protein PRUPE_ppa002373mg [Prunus persica]	[more]
gi\|657969473\|ref\|XP_008376456.1\|	1.7e-08	60.71	PREDICTED: somatic embryogenesis receptor kinase 1 [Malus domestica]	[more]

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C021820	MELO3C021820	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
GA33YO04FM1	GA33YO04FM1	EST
GA45YH19FM1	GA45YH19FM1	EST