MU51686 (transcribed_cluster) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MU51686
Type	transcribed_cluster
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Pre-rRNA-processing protein esf1
Location	chr6 : 545010 .. 546014 (-)
Sequence length	845

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

CTTCTTCTTCGCCTCTCCCTTGCAGCCGCCGATTACCTCATACACTTCTCAGTAGTGTTCGCCGCCGACTAAACAGCAAAACTCACTAATTGCGACGGTGTCAGCTTGAAATTTGTTTTTGCGCATTAGACGTTTTCATTCTCGTGCCTTTCCTTGCTCCATGATCGACGACGGAGCTACCTGCGACTCGAATACCAACTTCGAACAAGTTTCCTAACATAGTTTCTTCTTCGTTTGATACTCCAACACGAACAACGAGTTGTGCATCACGGTTTCGTCGAACGGGTGTCTTGCAACAGCGTTTGAATTGGAGGTTACCATAATCCAGACGTCCTAACATCGGGTTCACAGATAAGGTCTAGAAGCCTAAACCCCGTCGTCTACGATCGATTATCACTGCGTTTCGCCAGTTGCACTCTGATCGTAGGCCGTCATCATGGGCTCCCAAAACTTGAGCAACTCAAAGAAGAAGAACAAGAAGAGTAACAAGAGTAAAGATGAGAGAAATGTTCCTTCTTTAGCCTCGGAGCAAGCTGGCATCAACAATGATCAAGCCAAAAAGAAAATTATCACTGATGTTCGGTTCTCATCCGTGCATTCTGATCCTAGGTTTCAAAATGCCCCCAAGCACAAAGCCAAGGTTGTGATTGATTCACGATTTGACCAGATGTTCGTAGATAAGAGGTTCTCTTCGTCGTCGACTGCATTGGACAAGCGAGGCAGGGTTAAGAAGGGTAAGTCGGAAAATCCGCTACGTCGTTATTATAAAAATGAAGAGAAAAGTGACAAGGATGAGGATGACGATGAGGAGGGTGTGGAGGTAGAAGAGATAACAGTGATACTGT

Library


Library category	ESTs
melon CM-Dea library	2
melon CM-PEa library	1

Homology

[Close]

BLAST of MU51686 vs. Swiss-Prot
Match: ESF1_MOUSE (ESF1 homolog OS=Mus musculus GN=Esf1 PE=1 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.3e-07
Identity = 31/71 (43.66%), Postives = 41/71 (57.75%), Query Frame = 2


Query: 554 AKKKIITDVRFSSVHSDPRFQNAPKHKAKVVIDSRFDQMFVDKRFSSSSTALDKRGRVKK 613
           +K++I+ D RF  V  DPRF   P+ + KV ID RF  MF DK+F   + A+DKRGR   
Sbjct: 3   SKQEIMDDQRFRRVSKDPRFWEMPEKERKVKIDKRFRAMFHDKKF-KLNYAVDKRGRPIS 62

Query: 614 GKSENPLRRYY 673
             +   L+R+Y
Sbjct: 63  HSTTEDLKRFY 72

Query: 674  733
           
Sbjct: 123  72

Query: 734  767
           
Sbjct: 183  72

[Close]

BLAST of MU51686 vs. Swiss-Prot
Match: ESF1_HUMAN (ESF1 homolog OS=Homo sapiens GN=ESF1 PE=1 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 3.0e-07
Identity = 31/71 (43.66%), Postives = 41/71 (57.75%), Query Frame = 2


Query: 554 AKKKIITDVRFSSVHSDPRFQNAPKHKAKVVIDSRFDQMFVDKRFSSSSTALDKRGRVKK 613
           +K++I++D RF  V  DPRF   P+   KV ID RF  MF DK+F   + A+DKRGR   
Sbjct: 3   SKQEIMSDQRFRRVAKDPRFWEMPEKDRKVKIDKRFRAMFHDKKF-KLNYAVDKRGRPIS 62

Query: 614 GKSENPLRRYY 673
             +   L+R+Y
Sbjct: 63  HSTTEDLKRFY 72

Query: 674  733
           
Sbjct: 123  72

Query: 734  767
           
Sbjct: 183  72

[Close]

BLAST of MU51686 vs. Swiss-Prot
Match: ESF1_RAT (ESF1 homolog OS=Rattus norvegicus GN=Esf1 PE=1 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 3.9e-07
Identity = 31/71 (43.66%), Postives = 40/71 (56.34%), Query Frame = 2


Query: 554 AKKKIITDVRFSSVHSDPRFQNAPKHKAKVVIDSRFDQMFVDKRFSSSSTALDKRGRVKK 613
           +K++I+ D RF  V  DPRF   P+   KV ID RF  MF DK+F   + A+DKRGR   
Sbjct: 3   SKQEIMDDQRFRRVSKDPRFWEMPEKDRKVKIDKRFRAMFHDKKF-KLNYAVDKRGRPIS 62

Query: 614 GKSENPLRRYY 673
             +   L+R+Y
Sbjct: 63  HSTTEDLKRFY 72

Query: 674  733
           
Sbjct: 123  72

Query: 734  767
           
Sbjct: 183  72

[Close]

BLAST of MU51686 vs. TrEMBL
Match: A0A061FIL8_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_035334 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.4e-19
Identity = 54/91 (59.34%), Postives = 62/91 (68.13%), Query Frame = 2


Query: 503 RNVPSLASEQAGIN---NDQAKKKIITDVRFSSVHSDPRFQNAPKHKAKVVIDSRFDQMF 562
           +N P       G N   N     KIITD RF+S+HSDPRFQ  PKHK KVVIDSRF++MF
Sbjct: 17  KNKPDSILSPQGSNSKKNGSGSGKIITDARFASLHSDPRFQKVPKHKTKVVIDSRFNRMF 76

Query: 563 VDKRFSSSSTALDKRGRVKKGKSENPLRRYY 622
            DKRFSSSS  LDKRG+ KK  S++ LR YY
Sbjct: 77  SDKRFSSSSAPLDKRGKPKKENSQSSLRHYY 107

Query: 623  682
           
Sbjct: 137  107

Query: 683  742
           
Sbjct: 197  107

Query: 743  767
           
Sbjct: 257  107

[Close]

BLAST of MU51686 vs. TrEMBL
Match: M5W851_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa002263mg PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.5e-18
Identity = 52/78 (66.67%), Postives = 59/78 (75.64%), Query Frame = 2


Query: 545 NDQAK---KKIITDVRFSSVHSDPRFQNAPKHKAKVVIDSRFDQMFVDKRFSSSSTALDK 604
           N+++K   + +ITD RFSSVH DPRFQN PKHKAKV IDSRFD+MF DKRF SSS  LDK
Sbjct: 14  NEKSKGSDENLITDSRFSSVHWDPRFQNVPKHKAKVEIDSRFDRMFSDKRFGSSSVPLDK 73

Query: 605 RGRVKKGKSENPLRRYYK 664
           RG+ KK    N LR YYK
Sbjct: 74  RGKPKKLDQGNSLRHYYK 91

Query: 665  724
           
Sbjct: 134  91

Query: 725  770
           
Sbjct: 194  91

[Close]

BLAST of MU51686 vs. TrEMBL
Match: A0A059ARW0_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I02314 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.5e-18
Identity = 48/69 (69.57%), Postives = 56/69 (81.16%), Query Frame = 2


Query: 563 KIITDVRFSSVHSDPRFQNAPKHKAKVVIDSRFDQMFVDKRFSSSSTALDKRGRVKKGKS 622
           K+ITD RF+SVHSDPRFQ  PKHKAKV IDSRF++MF DK FSSS+  LDKRGR KK  S
Sbjct: 42  KVITDSRFASVHSDPRFQRVPKHKAKVAIDSRFNRMFSDKSFSSSAAPLDKRGRPKKQSS 101

Query: 623 ENPLRRYYK 682
           ++ LR YY+
Sbjct: 102 QSSLRHYYR 110

Query: 683  742
           
Sbjct: 162  110

Query: 743  770
           
Sbjct: 222  110

[Close]

BLAST of MU51686 vs. TrEMBL
Match: A0A0B0PXE8_GOSAR (Esf1 OS=Gossypium arboreum GN=F383_08920 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 2.6e-18
Identity = 47/75 (62.67%), Postives = 57/75 (76.00%), Query Frame = 2


Query: 542 NNDQAKKKIITDVRFSSVHSDPRFQNAPKHKAKVVIDSRFDQMFVDKRFSSSSTALDKRG 601
           N +    KII D RF+S+HSDPRFQ  PK K KVVIDSRF++MF DKRF+SSS  LDKRG
Sbjct: 26  NRESGGGKIIKDARFASLHSDPRFQKVPKRKTKVVIDSRFNRMFTDKRFASSSAPLDKRG 85

Query: 602 RVKKGKSENPLRRYY 661
           + KKG +++ LR YY
Sbjct: 86  KPKKGNTQSSLRHYY 100

Query: 662  721
           
Sbjct: 146  100

Query: 722  767
           
Sbjct: 206  100

[Close]

BLAST of MU51686 vs. TrEMBL
Match: W9T0N6_9ROSA (Pre-rRNA-processing protein esf1 OS=Morus notabilis GN=L484_026628 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 2.6e-18
Identity = 48/69 (69.57%), Postives = 56/69 (81.16%), Query Frame = 2


Query: 563 KIITDVRFSSVHSDPRFQNAPKHKAKVVIDSRFDQMFVDKRFSSSSTALDKRGRVKKGKS 622
           +IITD RF+SVHSDPRFQ  PKHKAKV IDSRFD++F DKRF SS+  +DKRG+ KK  S
Sbjct: 32  EIITDSRFASVHSDPRFQKVPKHKAKVEIDSRFDRVFTDKRFGSSAAPVDKRGKPKKQDS 91

Query: 623 ENPLRRYYK 682
           EN LR YY+
Sbjct: 92  ENFLRHYYR 100

Query: 683  742
           
Sbjct: 152  100

Query: 743  770
           
Sbjct: 212  100

[Close]

BLAST of MU51686 vs. TAIR10
Match: AT3G01160.1 (AT3G01160.1 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 67.8 bits (164), Expect = 1.2e-11
Identity = 32/70 (45.71%), Postives = 46/70 (65.71%), Query Frame = 2


Query: 563 KIITDVRFSSVHSDPRFQNAPKHKAKVVIDSRFDQMFVDKRFSSSSTALDKRGRVKK-GK 622
           ++I D RFSS H+DP+F+   +  +KV IDSRF  MF DKRF++ S  +DKRG+ +  G 
Sbjct: 29  EMIKDPRFSSAHTDPKFRRMRRRDSKVAIDSRFQPMFNDKRFATGSAPVDKRGKRRTGGT 88

Query: 623 SENPLRRYYK 682
            ++ LR +Y+
Sbjct: 89  GKDSLREFYR 98

Query: 683  742
           
Sbjct: 149  98

Query: 743  770
           
Sbjct: 209  98

[Close]

BLAST of MU51686 vs. NCBI nr
Match: gi|659074921|ref|XP_008437867.1| (PREDICTED: pre-rRNA-processing protein esf1 [Cucumis melo])

HSP 1 Score: 185.7 bits (470), Expect = 1.1e-43
Identity = 96/111 (86.49%), Postives = 96/111 (86.49%), Query Frame = 2


Query: 437 MGSQNLXXXXXXXXXXXXXXDERNVPSLASEQAGINNDQAKKKIITDVRFSSVHSDPRFQ 496
           MGSQNL              DERNVPSLASEQAGINNDQAKKKIITD RFSSVHSDPRFQ
Sbjct: 1   MGSQNLSNSKKKNKKSNKSKDERNVPSLASEQAGINNDQAKKKIITDARFSSVHSDPRFQ 60

Query: 497 NAPKHKAKVVIDSRFDQMFVDKRFSSSSTALDKRGRVKKGKSENPLRRYYK 556
           NAPKHKAKVVIDSRFDQMFVDKRFSSSSTALDKRGRVKKGKSENPLRRYYK
Sbjct: 61  NAPKHKAKVVIDSRFDQMFVDKRFSSSSTALDKRGRVKKGKSENPLRRYYK 111

Query: 557  616
           
Sbjct: 121  111

Query: 617  676
           
Sbjct: 181  111

Query: 677  736
           
Sbjct: 241  111

Query: 737  770
           
Sbjct: 301  111

[Close]

BLAST of MU51686 vs. NCBI nr
Match: gi|449433022|ref|XP_004134297.1| (PREDICTED: pre-rRNA-processing protein ESF1 [Cucumis sativus])

HSP 1 Score: 177.6 bits (449), Expect = 3.1e-41
Identity = 91/111 (81.98%), Postives = 95/111 (85.59%), Query Frame = 2


Query: 437 MGSQNLXXXXXXXXXXXXXXDERNVPSLASEQAGINNDQAKKKIITDVRFSSVHSDPRFQ 496
           MGS+NL              DERNVPSLASEQAGINNDQ+KKKIITD RFSSVHSDPRFQ
Sbjct: 1   MGSKNLSNSKKKNKKSNKSKDERNVPSLASEQAGINNDQSKKKIITDARFSSVHSDPRFQ 60

Query: 497 NAPKHKAKVVIDSRFDQMFVDKRFSSSSTALDKRGRVKKGKSENPLRRYYK 556
           NAPKHKAKVVIDSRF+QMF DKRFSS+STALDKRGRVKKGKSENPLRRYYK
Sbjct: 61  NAPKHKAKVVIDSRFNQMFKDKRFSSTSTALDKRGRVKKGKSENPLRRYYK 111

Query: 557  616
           
Sbjct: 121  111

Query: 617  676
           
Sbjct: 181  111

Query: 677  736
           
Sbjct: 241  111

Query: 737  770
           
Sbjct: 301  111

[Close]

BLAST of MU51686 vs. NCBI nr
Match: gi|720032192|ref|XP_010266037.1| (PREDICTED: pre-rRNA-processing protein ESF1 [Nelumbo nucifera])

HSP 1 Score: 105.1 bits (261), Expect = 2.0e-19
Identity = 53/91 (58.24%), Postives = 68/91 (74.73%), Query Frame = 2


Query: 497 DERNVPSLASEQAGINNDQAKKKIITDVRFSSVHSDPRFQNAPKHKAKVVIDSRFDQMFV 556
           DE   P++A  Q   N++  +KK+ITD RFSSVH DPRFQ  PK++AKV IDSRF++MF 
Sbjct: 42  DEAATPAVAGAQD--NDNHGRKKVITDARFSSVHFDPRFQKVPKNQAKVSIDSRFNRMFS 101

Query: 557 DKRFSSSSTALDKRGRVKKGKSENPLRRYYK 616
           DKRF+SSS  +DKRG++K   S NPLR YY+
Sbjct: 102 DKRFTSSSARVDKRGKLKSETSGNPLRHYYR 130

Query: 617  676
           
Sbjct: 162  130

Query: 677  736
           
Sbjct: 222  130

Query: 737  770
           
Sbjct: 282  130

[Close]

BLAST of MU51686 vs. NCBI nr
Match: gi|590599904|ref|XP_007019312.1| (Uncharacterized protein isoform 1 [Theobroma cacao])

HSP 1 Score: 102.8 bits (255), Expect = 9.8e-19
Identity = 54/91 (59.34%), Postives = 62/91 (68.13%), Query Frame = 2


Query: 503 RNVPSLASEQAGIN---NDQAKKKIITDVRFSSVHSDPRFQNAPKHKAKVVIDSRFDQMF 562
           +N P       G N   N     KIITD RF+S+HSDPRFQ  PKHK KVVIDSRF++MF
Sbjct: 17  KNKPDSILSPQGSNSKKNGSGSGKIITDARFASLHSDPRFQKVPKHKTKVVIDSRFNRMF 76

Query: 563 VDKRFSSSSTALDKRGRVKKGKSENPLRRYY 622
            DKRFSSSS  LDKRG+ KK  S++ LR YY
Sbjct: 77  SDKRFSSSSAPLDKRGKPKKENSQSSLRHYY 107

Query: 623  682
           
Sbjct: 137  107

Query: 683  742
           
Sbjct: 197  107

Query: 743  767
           
Sbjct: 257  107

[Close]

BLAST of MU51686 vs. NCBI nr
Match: gi|657948198|ref|XP_008393802.1| (PREDICTED: pre-rRNA-processing protein esf1-like [Malus domestica])

HSP 1 Score: 100.1 bits (248), Expect = 6.3e-18
Identity = 50/70 (71.43%), Postives = 56/70 (80.00%), Query Frame = 2


Query: 560 KKIITDVRFSSVHSDPRFQNAPKHKAKVVIDSRFDQMFVDKRFSSSSTALDKRGRVKKGK 619
           + II D RFSSVH DPRFQN PKHKAKV IDSRFD+MF DKRFSSSS  LDKRG+ KK +
Sbjct: 21  ENIIADPRFSSVHWDPRFQNVPKHKAKVEIDSRFDRMFTDKRFSSSSAPLDKRGKPKKLE 80

Query: 620 SENPLRRYYK 679
             N LR+YY+
Sbjct: 81  EGNSLRQYYR 90

Query: 680  739
           
Sbjct: 141  90

Query: 740  770
           
Sbjct: 201  90

The following BLAST results are available for this feature:

BLAST of MU51686 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ESF1_MOUSE	2.3e-07	43.66	ESF1 homolog OS=Mus musculus GN=Esf1 PE=1 SV=1	[more]
ESF1_HUMAN	3.0e-07	43.66	ESF1 homolog OS=Homo sapiens GN=ESF1 PE=1 SV=1	[more]
ESF1_RAT	3.9e-07	43.66	ESF1 homolog OS=Rattus norvegicus GN=Esf1 PE=1 SV=1	[more]

BLAST of MU51686 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A061FIL8_THECC	1.4e-19	59.34	Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_035334 PE=4 SV=1	[more]
M5W851_PRUPE	1.5e-18	66.67	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa002263mg PE=4 SV=1	[more]
A0A059ARW0_EUCGR	1.5e-18	69.57	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I02314 PE=4 SV=1	[more]
A0A0B0PXE8_GOSAR	2.6e-18	62.67	Esf1 OS=Gossypium arboreum GN=F383_08920 PE=4 SV=1	[more]
W9T0N6_9ROSA	2.6e-18	69.57	Pre-rRNA-processing protein esf1 OS=Morus notabilis GN=L484_026628 PE=4 SV=1	[more]

BLAST of MU51686 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G01160.1	1.2e-11	45.71	FUNCTIONS IN: molecular_function unknown	[more]

BLAST of MU51686 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659074921\|ref\|XP_008437867.1\|	1.1e-43	86.49	PREDICTED: pre-rRNA-processing protein esf1 [Cucumis melo]	[more]
gi\|449433022\|ref\|XP_004134297.1\|	3.1e-41	81.98	PREDICTED: pre-rRNA-processing protein ESF1 [Cucumis sativus]	[more]
gi\|720032192\|ref\|XP_010266037.1\|	2.0e-19	58.24	PREDICTED: pre-rRNA-processing protein ESF1 [Nelumbo nucifera]	[more]
gi\|590599904\|ref\|XP_007019312.1\|	9.8e-19	59.34	Uncharacterized protein isoform 1 [Theobroma cacao]	[more]
gi\|657948198\|ref\|XP_008393802.1\|	6.3e-18	71.43	PREDICTED: pre-rRNA-processing protein esf1-like [Malus domestica]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C006009	MELO3C006009	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
DEa0013P24	DEa0013P24	EST
DEa0014B07	DEa0014B07	EST
PEa0008J10	PEa0008J10	EST

InterPro

Analysis Name: InterPro Annotations of melon unigene v4
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR12202	UNCHARACTERIZED	coord: 21..132 score: 2.2