MU49720 (transcribed_cluster) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MU49720
Type	transcribed_cluster
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	RNA-binding family protein
Location	chr12 : 1134603 .. 1136505 (+)
Sequence length	774

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

AATCTCATCTAACGCGTCTGTCATTGTAGGCATCCGTGATTGAGTGAAAATCGATAAGAACGCTCCGGTTACTTTAGCTCTGATTTGGGTTTTGCCTTCGCTGATCTGTACGATGTCATACTCCCGAAGGTCTAGGTACTCCCGCTCCCCATCATTCAAACGATCTGTCTCAAGGTCTCTGTCGAGGTCAAGAAGCCGTTCAAGGAGCCCATCAAGTGATGTTGAAAATCCCGGGAACAATTTGTATGTCACTGGGTTGTCACCTAGAATAACTAGAAGAGAACTCGAGAAGCATTTTTCTGCTGAGGGGACAGTTCTAGATGTTCATCTTGTGGCCGATCCATTGACTAGAGAATCTCGTGGATTTGGATTCATTACCATGTCTAGCAATGATGAGGCAGAAAATTGCATCAAATATCTGAATCGATCTGTACTTGAAGGTCGTATAATTACTGTGGAAAAGGTAAAAAGTGAACTAATTATTTTTTCTTAGACTCGGGATGTTTCCTATCATTACTGTTGTCTTGTTCTTTAACCTCATGGTATATCTGGATGATTTGTTGTTAGAGATTTGAGTTTTTTTGCCAAGTGTTTTTTTGGCAGCAGGTTAGCTGTGTGTAGCAGCTCTTCATCAAACTCAAACTACAACTAAACAATCAAAACAAACACATGAGAAGCCTCAGAACATTGGGGTTGTATGCCCTGCATTTCTCTCTATTTCTGCCAATTGCATTATGTGTTGAGTTCTTTAAGTGTTTTAGGTTCTTTTTTCTT

Library


Library category	ESTs
melon 46d library	1
melon CM-Dea library	1
melon CM-PEa library	1
melon CM-VEa library	3

Homology

[Close]

BLAST of MU49720 vs. Swiss-Prot
Match: SR45A_ARATH (Serine/arginine-rich splicing factor SR45a OS=Arabidopsis thaliana GN=SR45A PE=1 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.3e-25
Identity = 56/84 (66.67%), Postives = 65/84 (77.38%), Query Frame = 2


Query: 218 DVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSNDE 277
           D ENPGN+LYVTGLS R+T R+LE HF+ EG V DVHLV DP TRESRGFGFI+M S  +
Sbjct: 69  DAENPGNSLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGD 128

Query: 278 AENCIKYLNRSVLEGRIITVEKVK 337
           A  CI+ L+ SVL+GR+ITVEK +
Sbjct: 129 ANRCIRSLDHSVLQGRVITVEKAR 152

Query: 338  397
           
Sbjct: 189  152

Query: 398  457
           
Sbjct: 249  152

Query: 458  470
           
Sbjct: 309  152

[Close]

BLAST of MU49720 vs. Swiss-Prot
Match: YDC1_SCHPO (Uncharacterized RNA-binding protein C25G10.01 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC25G10.01 PE=1 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 2.1e-12
Identity = 35/82 (42.68%), Postives = 54/82 (65.85%), Query Frame = 2


Query: 224 ENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSNDEAE 283
           EN GN+L+V+G++ R+   EL++ FS  GTV  V ++ +P+T+ SRGFGF++ S+ +EA 
Sbjct: 97  ENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEAT 156

Query: 284 NCIKYLNRSVLEGRIITVEKVK 343
           + I  LN     GR++ V+K K
Sbjct: 157 SAIDNLNSQEFYGRVLNVQKAK 178

Query: 344  403
           
Sbjct: 217  178

Query: 404  463
           
Sbjct: 277  178

Query: 464  470
           
Sbjct: 337  178

[Close]

BLAST of MU49720 vs. Swiss-Prot
Match: SAFB2_MOUSE (Scaffold attachment factor B2 OS=Mus musculus GN=Safb2 PE=1 SV=2)

HSP 1 Score: 71.6 bits (174), Expect = 1.4e-11
Identity = 35/81 (43.21%), Postives = 53/81 (65.43%), Query Frame = 2


Query: 233 GNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSNDEAENCI 292
           G NL+V+GLS      +L+  FS  G V+   +V +  +  +R +GF+TMS++DEA  CI
Sbjct: 450 GRNLWVSGLSSSTRAADLKSLFSKHGKVIGAKVVTNARSPGARCYGFVTMSTSDEATKCI 509

Query: 293 KYLNRSVLEGRIITVEKVKSE 352
            +L+R+ L GR+I+VEK K+E
Sbjct: 510 SHLHRTELHGRMISVEKAKNE 530

Query: 353  412
           
Sbjct: 570  530

Query: 413  472
           
Sbjct: 630  530

Query: 473  476
           
Sbjct: 690  530

[Close]

BLAST of MU49720 vs. Swiss-Prot
Match: SAFB2_HUMAN (Scaffold attachment factor B2 OS=Homo sapiens GN=SAFB2 PE=1 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 3.1e-11
Identity = 35/81 (43.21%), Postives = 53/81 (65.43%), Query Frame = 2


Query: 233 GNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSNDEAENCI 292
           G NL+V+GLS      +L+  FS  G V+   +V +  +  +R +GF+TMS++DEA  CI
Sbjct: 406 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSDEATKCI 465

Query: 293 KYLNRSVLEGRIITVEKVKSE 352
            +L+R+ L GR+I+VEK K+E
Sbjct: 466 SHLHRTELHGRMISVEKAKNE 486

Query: 353  412
           
Sbjct: 526  486

Query: 413  472
           
Sbjct: 586  486

Query: 473  476
           
Sbjct: 646  486

[Close]

BLAST of MU49720 vs. Swiss-Prot
Match: SAFB1_MOUSE (Scaffold attachment factor B1 OS=Mus musculus GN=Safb PE=1 SV=2)

HSP 1 Score: 65.1 bits (157), Expect = 1.3e-09
Identity = 32/81 (39.51%), Postives = 50/81 (61.73%), Query Frame = 2


Query: 233 GNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSNDEAENCI 292
           G N +V+GLS      +L+  FS  G V+   +V +  +  +R +GF+TMS+ +EA  CI
Sbjct: 427 GRNFWVSGLSSTTRATDLKNLFSRYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCI 486

Query: 293 KYLNRSVLEGRIITVEKVKSE 352
            +L+++ L G++I+VEK KSE
Sbjct: 487 SHLHKTELHGKMISVEKAKSE 507

Query: 353  412
           
Sbjct: 547  507

Query: 413  472
           
Sbjct: 607  507

Query: 473  476
           
Sbjct: 667  507

[Close]

BLAST of MU49720 vs. TrEMBL
Match: A0A0A0LXJ6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G528490 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 2.7e-38
Identity = 82/84 (97.62%), Postives = 83/84 (98.81%), Query Frame = 2


Query: 218 DVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSNDE 277
           DVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSNDE
Sbjct: 36  DVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSNDE 95

Query: 278 AENCIKYLNRSVLEGRIITVEKVK 337
           AENCIKYLNRSVLEGRIITVEK +
Sbjct: 96  AENCIKYLNRSVLEGRIITVEKAR 119

Query: 338  397
           
Sbjct: 156  119

Query: 398  457
           
Sbjct: 216  119

Query: 458  470
           
Sbjct: 276  119

[Close]

BLAST of MU49720 vs. TrEMBL
Match: A0A061GWF5_THECC (RNA-binding family protein isoform 4 OS=Theobroma cacao GN=TCM_041684 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 1.5e-33
Identity = 70/84 (83.33%), Postives = 79/84 (94.05%), Query Frame = 2


Query: 218 DVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSNDE 277
           DVENPGNNLYVTGLSPRIT+RELEKHF++EG V+DVHLV DP TRESRGFGF+TM++N+E
Sbjct: 40  DVENPGNNLYVTGLSPRITKRELEKHFASEGNVIDVHLVVDPWTRESRGFGFVTMATNEE 99

Query: 278 AENCIKYLNRSVLEGRIITVEKVK 337
           AE CIKYLNRSVLEGR+ITVEK K
Sbjct: 100 AERCIKYLNRSVLEGRVITVEKAK 123

Query: 338  397
           
Sbjct: 160  123

Query: 398  457
           
Sbjct: 220  123

Query: 458  470
           
Sbjct: 280  123

[Close]

BLAST of MU49720 vs. TrEMBL
Match: A0A061GZX9_THECC (RNA-binding family protein isoform 2 OS=Theobroma cacao GN=TCM_041684 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 2.0e-33
Identity = 70/83 (84.34%), Postives = 79/83 (95.18%), Query Frame = 2


Query: 218 DVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSNDE 277
           DVENPGNNLYVTGLSPRIT+RELEKHF++EG V+DVHLV DP TRESRGFGF+TM++N+E
Sbjct: 40  DVENPGNNLYVTGLSPRITKRELEKHFASEGNVIDVHLVVDPWTRESRGFGFVTMATNEE 99

Query: 278 AENCIKYLNRSVLEGRIITVEKV 337
           AE CIKYLNRSVLEGR+ITVEKV
Sbjct: 100 AERCIKYLNRSVLEGRVITVEKV 122

Query: 338  397
           
Sbjct: 160  122

Query: 398  457
           
Sbjct: 220  122

Query: 458  467
           
Sbjct: 280  122

[Close]

BLAST of MU49720 vs. TrEMBL
Match: B9HP82_POPTR (Transformer serine/arginine-rich ribonucleoprotein OS=Populus trichocarpa GN=POPTR_0009s04640g PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 5.8e-33
Identity = 70/84 (83.33%), Postives = 80/84 (95.24%), Query Frame = 2


Query: 218 DVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSNDE 277
           DVENPGNNLYVTGLSPRIT++ELEKHFSAEGTV+DVHLV DP TRESRGFGF+TMS+ +E
Sbjct: 46  DVENPGNNLYVTGLSPRITKKELEKHFSAEGTVIDVHLVVDPWTRESRGFGFVTMSTVEE 105

Query: 278 AENCIKYLNRSVLEGRIITVEKVK 337
           A++CIKYL+RSVLEGR+ITVEK K
Sbjct: 106 ADHCIKYLDRSVLEGRVITVEKAK 129

Query: 338  397
           
Sbjct: 166  129

Query: 398  457
           
Sbjct: 226  129

Query: 458  470
           
Sbjct: 286  129

[Close]

BLAST of MU49720 vs. TrEMBL
Match: A0A061GWL8_THECC (RNA-binding family protein isoform 1 OS=Theobroma cacao GN=TCM_041684 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 5.8e-33
Identity = 69/82 (84.15%), Postives = 78/82 (95.12%), Query Frame = 2


Query: 218 DVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSNDE 277
           DVENPGNNLYVTGLSPRIT+RELEKHF++EG V+DVHLV DP TRESRGFGF+TM++N+E
Sbjct: 40  DVENPGNNLYVTGLSPRITKRELEKHFASEGNVIDVHLVVDPWTRESRGFGFVTMATNEE 99

Query: 278 AENCIKYLNRSVLEGRIITVEK 337
           AE CIKYLNRSVLEGR+ITVEK
Sbjct: 100 AERCIKYLNRSVLEGRVITVEK 121

Query: 338  397
           
Sbjct: 160  121

Query: 398  457
           
Sbjct: 220  121

Query: 458  464
           
Sbjct: 280  121

[Close]

BLAST of MU49720 vs. TAIR10
Match: AT1G07350.1 (AT1G07350.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 118.2 bits (295), Expect = 7.3e-27
Identity = 56/84 (66.67%), Postives = 65/84 (77.38%), Query Frame = 2


Query: 218 DVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSNDE 277
           D ENPGN+LYVTGLS R+T R+LE HF+ EG V DVHLV DP TRESRGFGFI+M S  +
Sbjct: 69  DAENPGNSLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGD 128

Query: 278 AENCIKYLNRSVLEGRIITVEKVK 337
           A  CI+ L+ SVL+GR+ITVEK +
Sbjct: 129 ANRCIRSLDHSVLQGRVITVEKAR 152

Query: 338  397
           
Sbjct: 189  152

Query: 398  457
           
Sbjct: 249  152

Query: 458  470
           
Sbjct: 309  152

[Close]

BLAST of MU49720 vs. TAIR10
Match: AT4G35785.5 (AT4G35785.5 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 109.0 bits (271), Expect = 4.4e-24
Identity = 53/82 (64.63%), Postives = 61/82 (74.39%), Query Frame = 2


Query: 218 DVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSNDE 277
           +VENPG  LYVTGLS R+T ++LE HF+ EG V    LV +P TR SRGF F+TMSS  +
Sbjct: 80  EVENPGTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKD 139

Query: 278 AENCIKYLNRSVLEGRIITVEK 337
           AE CIKYLN+SVLEGR ITVE+
Sbjct: 140 AERCIKYLNQSVLEGRYITVER 161

Query: 338  397
           
Sbjct: 200  161

Query: 398  457
           
Sbjct: 260  161

Query: 458  464
           
Sbjct: 320  161

[Close]

BLAST of MU49720 vs. TAIR10
Match: AT3G52380.1 (AT3G52380.1 chloroplast RNA-binding protein 33)

HSP 1 Score: 63.2 bits (152), Expect = 2.8e-10
Identity = 33/72 (45.83%), Postives = 44/72 (61.11%), Query Frame = 2


Query: 242 LYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSNDEAENCIKYL 301
           LYV  L   IT  EL + F   GTV+DV +V D +T  SRGFGF+TM S +EA+  ++  
Sbjct: 118 LYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMF 177

Query: 302 NRSVLEGRIITV 361
           N S + GR + V
Sbjct: 178 NSSQIGGRTVKV 189

Query: 362  421
           
Sbjct: 238  189

Query: 422  458
           
Sbjct: 298  189

HSP 2 Score: 39.3 bits (90), Expect = 4.3e-03
Identity = 22/77 (28.57%), Postives = 39/77 (50.65%), Query Frame = 2


Query: 221 VENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSNDEA 280
           V++P + +Y   L   +T + L+  F  +  VL   ++ +  T  SRGFGFI+  S +  
Sbjct: 215 VDSP-HKVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENV 274

Query: 281 ENCIKYLNRSVLEGRII 340
           ++ +  +N   +EGR +
Sbjct: 275 QSALATMNGVEVEGRAL 290

Query: 341  400
           
Sbjct: 335  290

Query: 401  452
           
Sbjct: 395  290

[Close]

BLAST of MU49720 vs. TAIR10
Match: AT5G04280.1 (AT5G04280.1 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain)

HSP 1 Score: 59.7 bits (143), Expect = 3.1e-09
Identity = 29/82 (35.37%), Postives = 47/82 (57.32%), Query Frame = 2


Query: 233 GNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSNDEAENCI 292
           G+ ++V GLSP +T R+LE+ FS  G +LD  ++ +  T  SRGFGFIT +     +  I
Sbjct: 6   GSRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESI 65

Query: 293 KYLNRSVLEGRIITVEKVKSEL 352
           + ++      R+I+V + + +L
Sbjct: 66  REMHGRDFGDRVISVNRAEPKL 87

Query: 353  412
           
Sbjct: 126  87

Query: 413  472
           
Sbjct: 186  87

Query: 473  479
           
Sbjct: 246  87

[Close]

BLAST of MU49720 vs. TAIR10
Match: AT3G53460.4 (AT3G53460.4 chloroplast RNA-binding protein 29)

HSP 1 Score: 58.5 bits (140), Expect = 6.8e-09
Identity = 30/80 (37.50%), Postives = 46/80 (57.50%), Query Frame = 2


Query: 233 GNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSNDEAENCI 292
           GN LYV  LS  +    LE  F+ +G V++  ++ D  +  S+GFGF+T+SS+ E +  I
Sbjct: 277 GNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAI 336

Query: 293 KYLNRSVLEGRIITVEKVKS 352
             LN + L+GR I V + ++
Sbjct: 337 NSLNGADLDGRQIRVSEAEA 356

Query: 353  412
           
Sbjct: 397  356

Query: 413  472
           
Sbjct: 457  356

HSP 2 Score: 45.1 bits (105), Expect = 7.8e-05
Identity = 24/66 (36.36%), Postives = 34/66 (51.52%), Query Frame = 2


Query: 227 NPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSNDEAEN 286
           +P   L+V  LS  +   +L + F + G V  V ++ D +T  SRGFGF+TMS+  E E 
Sbjct: 96  SPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEA 155

Query: 287 CIKYLN 346
             +  N
Sbjct: 156 AAQQFN 161

Query: 347  406
           
Sbjct: 216  161

Query: 407  425
           
Sbjct: 276  161

[Close]

BLAST of MU49720 vs. NCBI nr
Match: gi|449455042|ref|XP_004145262.1| (PREDICTED: serine/arginine-rich splicing factor SR45a-like [Cucumis sativus])

HSP 1 Score: 170.2 bits (430), Expect = 4.6e-39
Identity = 82/84 (97.62%), Postives = 83/84 (98.81%), Query Frame = 2


Query: 218 DVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSNDE 277
           DVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSNDE
Sbjct: 36  DVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSNDE 95

Query: 278 AENCIKYLNRSVLEGRIITVEKVK 337
           AENCIKYLNRSVLEGRIITVEK +
Sbjct: 96  AENCIKYLNRSVLEGRIITVEKAR 119

Query: 338  397
           
Sbjct: 156  119

Query: 398  457
           
Sbjct: 216  119

Query: 458  470
           
Sbjct: 276  119

[Close]

BLAST of MU49720 vs. NCBI nr
Match: gi|659115137|ref|XP_008457405.1| (PREDICTED: serine/arginine-rich splicing factor 2-like [Cucumis melo])

HSP 1 Score: 169.1 bits (427), Expect = 1.0e-38
Identity = 81/84 (96.43%), Postives = 83/84 (98.81%), Query Frame = 2


Query: 218 DVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSNDE 277
           DVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHL+ADPLTRESRGFGFITMSSNDE
Sbjct: 36  DVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLLADPLTRESRGFGFITMSSNDE 95

Query: 278 AENCIKYLNRSVLEGRIITVEKVK 337
           AENCIKYLNRSVLEGRIITVEK +
Sbjct: 96  AENCIKYLNRSVLEGRIITVEKAR 119

Query: 338  397
           
Sbjct: 156  119

Query: 398  457
           
Sbjct: 216  119

Query: 458  470
           
Sbjct: 276  119

[Close]

BLAST of MU49720 vs. NCBI nr
Match: gi|590588430|ref|XP_007016197.1| (RNA-binding family protein isoform 4 [Theobroma cacao])

HSP 1 Score: 154.5 bits (389), Expect = 2.6e-34
Identity = 70/84 (83.33%), Postives = 79/84 (94.05%), Query Frame = 2


Query: 218 DVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSNDE 277
           DVENPGNNLYVTGLSPRIT+RELEKHF++EG V+DVHLV DP TRESRGFGF+TM++N+E
Sbjct: 40  DVENPGNNLYVTGLSPRITKRELEKHFASEGNVIDVHLVVDPWTRESRGFGFVTMATNEE 99

Query: 278 AENCIKYLNRSVLEGRIITVEKVK 337
           AE CIKYLNRSVLEGR+ITVEK K
Sbjct: 100 AERCIKYLNRSVLEGRVITVEKAK 123

Query: 338  397
           
Sbjct: 160  123

Query: 398  457
           
Sbjct: 220  123

Query: 458  470
           
Sbjct: 280  123

[Close]

BLAST of MU49720 vs. NCBI nr
Match: gi|590588423|ref|XP_007016195.1| (RNA-binding family protein isoform 2 [Theobroma cacao])

HSP 1 Score: 153.7 bits (387), Expect = 4.4e-34
Identity = 70/83 (84.34%), Postives = 79/83 (95.18%), Query Frame = 2


Query: 218 DVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSNDE 277
           DVENPGNNLYVTGLSPRIT+RELEKHF++EG V+DVHLV DP TRESRGFGF+TM++N+E
Sbjct: 40  DVENPGNNLYVTGLSPRITKRELEKHFASEGNVIDVHLVVDPWTRESRGFGFVTMATNEE 99

Query: 278 AENCIKYLNRSVLEGRIITVEKV 337
           AE CIKYLNRSVLEGR+ITVEKV
Sbjct: 100 AERCIKYLNRSVLEGRVITVEKV 122

Query: 338  397
           
Sbjct: 160  122

Query: 398  457
           
Sbjct: 220  122

Query: 458  467
           
Sbjct: 280  122

[Close]

BLAST of MU49720 vs. NCBI nr
Match: gi|224106315|ref|XP_002314126.1| (transformer serine/arginine-rich ribonucleoprotein [Populus trichocarpa])

HSP 1 Score: 152.5 bits (384), Expect = 9.9e-34
Identity = 70/84 (83.33%), Postives = 80/84 (95.24%), Query Frame = 2


Query: 218 DVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSNDE 277
           DVENPGNNLYVTGLSPRIT++ELEKHFSAEGTV+DVHLV DP TRESRGFGF+TMS+ +E
Sbjct: 46  DVENPGNNLYVTGLSPRITKKELEKHFSAEGTVIDVHLVVDPWTRESRGFGFVTMSTVEE 105

Query: 278 AENCIKYLNRSVLEGRIITVEKVK 337
           A++CIKYL+RSVLEGR+ITVEK K
Sbjct: 106 ADHCIKYLDRSVLEGRVITVEKAK 129

Query: 338  397
           
Sbjct: 166  129

Query: 398  457
           
Sbjct: 226  129

Query: 458  470
           
Sbjct: 286  129

The following BLAST results are available for this feature:

BLAST of MU49720 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SR45A_ARATH	1.3e-25	66.67	Serine/arginine-rich splicing factor SR45a OS=Arabidopsis thaliana GN=SR45A PE=1...	[more]
YDC1_SCHPO	2.1e-12	42.68	Uncharacterized RNA-binding protein C25G10.01 OS=Schizosaccharomyces pombe (stra...	[more]
SAFB2_MOUSE	1.4e-11	43.21	Scaffold attachment factor B2 OS=Mus musculus GN=Safb2 PE=1 SV=2	[more]
SAFB2_HUMAN	3.1e-11	43.21	Scaffold attachment factor B2 OS=Homo sapiens GN=SAFB2 PE=1 SV=1	[more]
SAFB1_MOUSE	1.3e-09	39.51	Scaffold attachment factor B1 OS=Mus musculus GN=Safb PE=1 SV=2	[more]

BLAST of MU49720 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LXJ6_CUCSA	2.7e-38	97.62	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G528490 PE=4 SV=1	[more]
A0A061GWF5_THECC	1.5e-33	83.33	RNA-binding family protein isoform 4 OS=Theobroma cacao GN=TCM_041684 PE=4 SV=1	[more]
A0A061GZX9_THECC	2.0e-33	84.34	RNA-binding family protein isoform 2 OS=Theobroma cacao GN=TCM_041684 PE=4 SV=1	[more]
B9HP82_POPTR	5.8e-33	83.33	Transformer serine/arginine-rich ribonucleoprotein OS=Populus trichocarpa GN=POP...	[more]
A0A061GWL8_THECC	5.8e-33	84.15	RNA-binding family protein isoform 1 OS=Theobroma cacao GN=TCM_041684 PE=4 SV=1	[more]

BLAST of MU49720 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G07350.1	7.3e-27	66.67	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G35785.5	4.4e-24	64.63	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G52380.1	2.8e-10	45.83	chloroplast RNA-binding protein 33	[more]
AT5G04280.1	3.1e-09	35.37	RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc...	[more]
AT3G53460.4	6.8e-09	37.50	chloroplast RNA-binding protein 29	[more]

BLAST of MU49720 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449455042\|ref\|XP_004145262.1\|	4.6e-39	97.62	PREDICTED: serine/arginine-rich splicing factor SR45a-like [Cucumis sativus]	[more]
gi\|659115137\|ref\|XP_008457405.1\|	1.0e-38	96.43	PREDICTED: serine/arginine-rich splicing factor 2-like [Cucumis melo]	[more]
gi\|590588430\|ref\|XP_007016197.1\|	2.6e-34	83.33	RNA-binding family protein isoform 4 [Theobroma cacao]	[more]
gi\|590588423\|ref\|XP_007016195.1\|	4.4e-34	84.34	RNA-binding family protein isoform 2 [Theobroma cacao]	[more]
gi\|224106315\|ref\|XP_002314126.1\|	9.9e-34	83.33	transformer serine/arginine-rich ribonucleoprotein [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C020575	MELO3C020575	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
46D21F10	46D21F10	EST
DEa0005H09	DEa0005H09	EST
PEa0002L20	PEa0002L20	EST
VEa0003B02	VEa0003B02	EST
VEa0007D02	VEa0007D02	EST
VEa0011J22	VEa0011J22	EST

InterPro

Analysis Name: InterPro Annotations of melon unigene v4
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 44..113 score: 1.8
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 43..116 score: 2.0
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 42..120 score: 16
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 14..119 score: 1.9
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 30..120 score: 1.09
None	No IPR available	PANTHER	PTHR15241	TRANSFORMER-2-RELATED	coord: 1..119 score: 1.8
None	No IPR available	PANTHER	PTHR15241:SF4	TRANSFORMER-SR RIBONUCLEOPROTEIN-RELATED	coord: 1..119 score: 1.8