MU48813 (transcribed_cluster) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MU48813
Type	transcribed_cluster
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	No hit
Location	chr1 : 22161905 .. 22163191 (+)
Sequence length	618

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

GAACAGGTACAACATTTTGTTCTTCTTCTTTATTTCTCTGTCTCTCTTGTCCTTTTCCTTCTTCTTCTTCCTCATCTCTTAGATTCATCAACATTTCCAACCCCTTCTTCTCCCCAAGCCCTAGTTTCGCACATTTTGTTTCTTCCAGGCGCGTCATCTTCGTTTGTCGTCTTCAGTCGTCCCGTGCTTCTCCTTGCTCTCTCCTCCATCTGCGAATCAAAATTACCATTTTGTGTATATTGCTCAATGAGGTGTTGCTTAAGAAAGAGTATGGTGGCAAGGTAAATGTTATAGTATATATATATATATATATATATATACACATGTGTATCAATATGCCCAATCTATCTTGTGATGTTTTTAAAGGTTGAGATTATTTCTCTTTTTTGGGTCTACTGACGATGCATTTCAGATTGCAGATGTGTGGTCGTGTGGGGTAACTTTATATGTTCTTTGGTTTGTTATTCATTTGTTATAATTAATAGCAAAGTTAGATATTGTTATTGGTTGCATATGTTTCCTCTGTGCTCCTAAAAAATGGTTAGTTTTGTGTTCTTCATGTTGACACCAAGATATTGCTTTGCAATAGCCGCTAACTCAACAACGCCTTTGTCCTTT

Library


Library category	ESTs
melon CM-Dea library	2

Homology

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BLAST of MU48813 vs. NCBI nr
Match: gi|659092969|ref|XP_008447319.1| (PREDICTED: uncharacterized protein LOC103489789 [Cucumis melo])

HSP 1 Score: 101.7 bits (252), Expect = 1.6e-18
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 3


Query: 129 AHFVSSRRVIFVCRLQSSRASPCSLLHLRIKITILCILLNEVLLKKEYGGK 188
           AHFVSSRRVIFVCRLQSSRASPCSLLHLRIKITILCILLNEVLLKKEYGGK
Sbjct: 165 AHFVSSRRVIFVCRLQSSRASPCSLLHLRIKITILCILLNEVLLKKEYGGK 215

Query: 189  248
           
Sbjct: 225  215

Query: 249  282
           
Sbjct: 285  215

The following BLAST results are available for this feature:

BLAST of MU48813 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659092969\|ref\|XP_008447319.1\|	1.6e-18	100.00	PREDICTED: uncharacterized protein LOC103489789 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C012719	MELO3C012719	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
DEa0001G12	DEa0001G12	EST
DEa0008D08	DEa0008D08	EST

InterPro

Analysis Name: InterPro Annotations of melon unigene v4
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 20..47 scor