MU47324 (transcribed_cluster) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MU47324
Type	transcribed_cluster
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	nuclear fusion defective 6
Location	chr11 : 12232517 .. 12244269 (+)
Sequence length	845

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

GAAAGAGTCAATTCTCTCTTGTTCATATTCCGAAACCAAGAAGAACAACCTTCAGAATCTATCATTTCTTCTCATAATCAATGGCATCAATTGGTGCTCGGTCTGCTTTCCGGTCGTTCTCCGGTTCGGCACGCCGTGCTGCTGCTCACATCGGTTCTCAACCCAAGCCCTCATCAACCTCTCCCTTTCGCATGGCAACTAACAAACCCCTCTCTCATCCTACTTTCAGGCGTGCGCCTGTGATGAGCTTCTGTTTGGAGTCAATGATGCCATTTCACTCTGTGTCGTCCTCAGCTTTGATGACTTCAATGCTCTCTATCTCGCGCCAGAGCTGCGGTTGGCTCCCCGAAGCATGGAATGATGATAAATGACAAGAGGATCTATACGGATGGTGACTTCTATCAAGTAGAAGCTTCCATGCTCCAAATGGTGGTTTGTGAAGAAGAGCTTCCGATCAATGGCAATGGATTATTGTTATTTGAAACTTGTCTTTACAATGTTGAGTTTTTGCTGTCTAACTGCCTCTTGTTTTGTTTTCTAGGGCGGTGATATTTAATCAGCATGTGTAGCATAAAGGTTTGCAACTGTTGATTTTGCCATTTTCATTGCTTATTTGTACCTCAAATTCAGATTCTTCATTAGAAGTATCCTAGTTTCGCCTAGATTATCTGAAACCCTGATTTATGGCTTTCAATTGGATTATTGGTATAATTGGCTTTCAATTGGGTTATTGGTAGGATGACCAAAATCAGAATCTAGATGTGAGAACGGTTTGTGATTTGCCAAGTTTAAAGCATGGGAACAAATATTGTTTGTTTGGTTTTCGCTCAACCTTGTTCTAATTT

Library


Library category	ESTs
melon 15d library	2
melon A library	1
melon AI library	2
melon VFLP2 library	1
melon PS library	1

Homology

[Close]

BLAST of MU47324 vs. Swiss-Prot
Match: NFD6_ARATH (Protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=NFD6 PE=2 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 3.2e-09
Identity = 32/62 (51.61%), Postives = 41/62 (66.13%), Query Frame = 3


Query: 207 PLSHPTFRRAPVMS---------FCLESMMPFHSVSSSALMTSMLSISRQSCGWLPEAWN 266
           PL   T RR+P++S         FC+ES++P+HS ++SALMTS LSIS Q+ GWL +A N
Sbjct: 38  PLFRATARRSPLLSPLRNPVELSFCVESLLPYHSATASALMTSKLSISGQTYGWLSDACN 97

Query: 267 DD 326
           DD
Sbjct: 98  DD 99

Query: 327  366
           
Sbjct: 158  99

[Close]

BLAST of MU47324 vs. TrEMBL
Match: A0A0A0LMP1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G408410 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.2e-28
Identity = 66/73 (90.41%), Postives = 67/73 (91.78%), Query Frame = 3


Query: 147 HIGSQPKPSSTSPFRMATNKPLSHPTFRRAPVMSFCLESMMPFHSVSSSALMTSMLSISR 206
           HIGSQPK SS+SPFRMATNKPLSH TFR AP MSFCLESMMPFHSVSSSALMTSMLSISR
Sbjct: 23  HIGSQPKASSSSPFRMATNKPLSHRTFRCAPEMSFCLESMMPFHSVSSSALMTSMLSISR 82

Query: 207 QSCGWLPEAWNDD 266
            SCGWLPEA NDD
Sbjct: 83  HSCGWLPEACNDD 95

Query: 267  326
           
Sbjct: 143  95

Query: 327  366
           
Sbjct: 203  95

[Close]

BLAST of MU47324 vs. TrEMBL
Match: A0A0A0LT36_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G408420 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.2e-26
Identity = 62/68 (91.18%), Postives = 63/68 (92.65%), Query Frame = 3


Query: 147 HIGSQPKPSSTSPFRMATNKPLSHPTFRRAPVMSFCLESMMPFHSVSSSALMTSMLSISR 206
           HIGSQPKPS +SPFRMATNKPLSH TFR AP MSFCLESMMPFHSVSSSALMTSMLSISR
Sbjct: 23  HIGSQPKPSPSSPFRMATNKPLSHRTFRCAPEMSFCLESMMPFHSVSSSALMTSMLSISR 82

Query: 207 QSCGWLPE 266
            SCGWLPE
Sbjct: 83  HSCGWLPE 90

Query: 267  326
           
Sbjct: 143  90

Query: 327  351
           
Sbjct: 203  90

[Close]

BLAST of MU47324 vs. TrEMBL
Match: A0A0A0LN06_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G408390 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 2.6e-26
Identity = 62/68 (91.18%), Postives = 63/68 (92.65%), Query Frame = 3


Query: 147 HIGSQPKPSSTSPFRMATNKPLSHPTFRRAPVMSFCLESMMPFHSVSSSALMTSMLSISR 206
           HIGSQPK SS+SPFRMATNKPLSH TFR AP MSFCLESMMPFHSVSSSALMTSMLSISR
Sbjct: 23  HIGSQPKASSSSPFRMATNKPLSHRTFRCAPEMSFCLESMMPFHSVSSSALMTSMLSISR 82

Query: 207 QSCGWLPE 266
            SCGWLPE
Sbjct: 83  HSCGWLPE 90

Query: 267  326
           
Sbjct: 143  90

Query: 327  351
           
Sbjct: 203  90

[Close]

BLAST of MU47324 vs. TrEMBL
Match: K7LW41_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_12G206300 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 4.6e-15
Identity = 44/72 (61.11%), Postives = 56/72 (77.78%), Query Frame = 3


Query: 150 IGSQPKPSSTSPFRMATNKPLSHPTFRRAPVMSFCLESMMPFHSVSSSALMTSMLSISRQ 209
           +GS  K ++ SPFR+A+NKPLS  T R    +SFC+ESM+P+HS ++SALMTSMLS+SR 
Sbjct: 25  LGSDAK-AARSPFRVASNKPLSQSTLRCPVELSFCVESMLPYHSATASALMTSMLSVSRH 84

Query: 210 SCGWLPEAWNDD 269
           S GWLPE  NDD
Sbjct: 85  SYGWLPEDCNDD 95

Query: 270  329
           
Sbjct: 145  95

Query: 330  366
           
Sbjct: 205  95

[Close]

BLAST of MU47324 vs. TrEMBL
Match: K7M2M3_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_13G294600 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.7e-14
Identity = 42/72 (58.33%), Postives = 57/72 (79.17%), Query Frame = 3


Query: 150 IGSQPKPSSTSPFRMATNKPLSHPTFRRAPVMSFCLESMMPFHSVSSSALMTSMLSISRQ 209
           +GS+ K ++ SPFR+A+N+PLS  T R    +SFC+ESM+P+H+ ++SALMTSMLS+SR 
Sbjct: 53  LGSEAK-AARSPFRVASNQPLSQSTLRCPVELSFCVESMLPYHTATASALMTSMLSVSRH 112

Query: 210 SCGWLPEAWNDD 269
           S GWLPE  NDD
Sbjct: 113 SYGWLPEDCNDD 123

Query: 270  329
           
Sbjct: 173  123

Query: 330  366
           
Sbjct: 233  123

[Close]

BLAST of MU47324 vs. TAIR10
Match: AT2G20585.1 (AT2G20585.1 nuclear fusion defective 6)

HSP 1 Score: 63.9 bits (154), Expect = 1.8e-10
Identity = 32/62 (51.61%), Postives = 41/62 (66.13%), Query Frame = 3


Query: 207 PLSHPTFRRAPVMS---------FCLESMMPFHSVSSSALMTSMLSISRQSCGWLPEAWN 266
           PL   T RR+P++S         FC+ES++P+HS ++SALMTS LSIS Q+ GWL +A N
Sbjct: 38  PLFRATARRSPLLSPLRNPVELSFCVESLLPYHSATASALMTSKLSISGQTYGWLSDACN 97

Query: 267 DD 326
           DD
Sbjct: 98  DD 99

Query: 327  366
           
Sbjct: 158  99

[Close]

BLAST of MU47324 vs. TAIR10
Match: AT1G28395.2 (AT1G28395.2 unknown protein)

HSP 1 Score: 60.1 bits (144), Expect = 2.6e-09
Identity = 29/73 (39.73%), Postives = 47/73 (64.38%), Query Frame = 3


Query: 153 GSQPKPSST-SPFRMATNKPLSHPTFRRAPVMSFCLESMMPFHSVSSSALMTSMLSISRQ 212
           G +P PSS  + FRM    PL++  FR    +S C+E+M+P+H+ ++SAL+ SMLS+SR+
Sbjct: 25  GPKPMPSSARTAFRMPKQSPLTNRIFRSPVELSCCVETMLPYHTATASALLNSMLSVSRR 84

Query: 213 SCGWLPEAWNDDK 272
             GW+ +  ++ +
Sbjct: 85  --GWIVDGLDETR 95

Query: 273  332
           
Sbjct: 145  95

Query: 333  369
           
Sbjct: 205  95

[Close]

BLAST of MU47324 vs. TAIR10
Match: AT2G33847.1 (AT2G33847.1 unknown protein)

HSP 1 Score: 57.0 bits (136), Expect = 2.2e-08
Identity = 27/60 (45.00%), Postives = 40/60 (66.67%), Query Frame = 3


Query: 156 SQPKPSST-SPFRMATNKPLSHPTFRRAPVMSFCLESMMPFHSVSSSALMTSMLSISRQS 215
           ++P PSS  S F++    PLSH  FR    +S C+E+M+P+H+ ++SAL+ SMLS+S +S
Sbjct: 23  TKPMPSSARSSFKLPKQSPLSHRIFRSPVELSCCVETMLPYHTATASALLNSMLSVSGRS 82

Query: 216  275
           
Sbjct: 83   82

Query: 276  333
           
Sbjct: 143  82

[Close]

BLAST of MU47324 vs. NCBI nr
Match: gi|778673349|ref|XP_011649977.1| (PREDICTED: protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 [Cucumis sativus])

HSP 1 Score: 139.4 bits (350), Expect = 9.4e-30
Identity = 68/74 (91.89%), Postives = 69/74 (93.24%), Query Frame = 3


Query: 147 HIGSQPKPSSTSPFRMATNKPLSHPTFRRAPVMSFCLESMMPFHSVSSSALMTSMLSISR 206
           HIGSQPK SS+SPFRMATNKPLSH TFR AP MSFCLESMMPFHSVSSSALMTSMLSISR
Sbjct: 23  HIGSQPKASSSSPFRMATNKPLSHRTFRCAPEMSFCLESMMPFHSVSSSALMTSMLSISR 82

Query: 207 QSCGWLPEAWNDDK 266
            SCGWLPEAWNDDK
Sbjct: 83  HSCGWLPEAWNDDK 96

Query: 267  326
           
Sbjct: 143  96

Query: 327  369
           
Sbjct: 203  96

[Close]

BLAST of MU47324 vs. NCBI nr
Match: gi|778673331|ref|XP_011649973.1| (PREDICTED: protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 [Cucumis sativus])

HSP 1 Score: 135.6 bits (340), Expect = 1.4e-28
Identity = 67/74 (90.54%), Postives = 68/74 (91.89%), Query Frame = 3


Query: 147 HIGSQPKPSSTSPFRMATNKPLSHPTFRRAPVMSFCLESMMPFHSVSSSALMTSMLSISR 206
           HIGSQPKPS +SPFRMATNKPLSH TFR AP MSFCLESMMPFHSVSSSALMTSMLSISR
Sbjct: 23  HIGSQPKPSPSSPFRMATNKPLSHRTFRCAPEMSFCLESMMPFHSVSSSALMTSMLSISR 82

Query: 207 QSCGWLPEAWNDDK 266
            SCGWLPEA NDDK
Sbjct: 83  HSCGWLPEACNDDK 96

Query: 267  326
           
Sbjct: 143  96

Query: 327  369
           
Sbjct: 203  96

[Close]

BLAST of MU47324 vs. NCBI nr
Match: gi|778673343|ref|XP_011649975.1| (PREDICTED: protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 [Cucumis sativus])

HSP 1 Score: 132.1 bits (331), Expect = 1.5e-27
Identity = 66/73 (90.41%), Postives = 67/73 (91.78%), Query Frame = 3


Query: 147 HIGSQPKPSSTSPFRMATNKPLSHPTFRRAPVMSFCLESMMPFHSVSSSALMTSMLSISR 206
           HIGSQPK SS+SPFRMATNKPLSH TFR AP MSFCLESMMPFHSVSSSALMTSMLSISR
Sbjct: 23  HIGSQPKASSSSPFRMATNKPLSHRTFRCAPEMSFCLESMMPFHSVSSSALMTSMLSISR 82

Query: 207 QSCGWLPEAWNDD 266
            SCGWLPEA NDD
Sbjct: 83  HSCGWLPEACNDD 95

Query: 267  326
           
Sbjct: 143  95

Query: 327  366
           
Sbjct: 203  95

[Close]

BLAST of MU47324 vs. NCBI nr
Match: gi|778673327|ref|XP_011649972.1| (PREDICTED: protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 [Cucumis sativus])

HSP 1 Score: 125.6 bits (314), Expect = 1.4e-25
Identity = 62/68 (91.18%), Postives = 63/68 (92.65%), Query Frame = 3


Query: 147 HIGSQPKPSSTSPFRMATNKPLSHPTFRRAPVMSFCLESMMPFHSVSSSALMTSMLSISR 206
           HIGSQPKPS +SPFRMATNKPLSH TFR AP MSFCLESMMPFHSVSSSALMTSMLSISR
Sbjct: 23  HIGSQPKPSPSSPFRMATNKPLSHRTFRCAPEMSFCLESMMPFHSVSSSALMTSMLSISR 82

Query: 207 QSCGWLPE 266
            SCGWLPE
Sbjct: 83  HSCGWLPE 90

Query: 267  326
           
Sbjct: 143  90

Query: 327  351
           
Sbjct: 203  90

[Close]

BLAST of MU47324 vs. NCBI nr
Match: gi|700208077|gb|KGN63196.1| (hypothetical protein Csa_2G408420 [Cucumis sativus])

HSP 1 Score: 125.6 bits (314), Expect = 1.4e-25
Identity = 62/68 (91.18%), Postives = 63/68 (92.65%), Query Frame = 3


Query: 147 HIGSQPKPSSTSPFRMATNKPLSHPTFRRAPVMSFCLESMMPFHSVSSSALMTSMLSISR 206
           HIGSQPKPS +SPFRMATNKPLSH TFR AP MSFCLESMMPFHSVSSSALMTSMLSISR
Sbjct: 23  HIGSQPKPSPSSPFRMATNKPLSHRTFRCAPEMSFCLESMMPFHSVSSSALMTSMLSISR 82

Query: 207 QSCGWLPE 266
            SCGWLPE
Sbjct: 83  HSCGWLPE 90

Query: 267  326
           
Sbjct: 143  90

Query: 327  351
           
Sbjct: 203  90

The following BLAST results are available for this feature:

BLAST of MU47324 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NFD6_ARATH	3.2e-09	51.61	Protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial OS=Arabidopsis t...	[more]

BLAST of MU47324 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LMP1_CUCSA	1.2e-28	90.41	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G408410 PE=4 SV=1	[more]
A0A0A0LT36_CUCSA	1.2e-26	91.18	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G408420 PE=4 SV=1	[more]
A0A0A0LN06_CUCSA	2.6e-26	91.18	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G408390 PE=4 SV=1	[more]
K7LW41_SOYBN	4.6e-15	61.11	Uncharacterized protein OS=Glycine max GN=GLYMA_12G206300 PE=4 SV=1	[more]
K7M2M3_SOYBN	1.7e-14	58.33	Uncharacterized protein OS=Glycine max GN=GLYMA_13G294600 PE=4 SV=1	[more]

BLAST of MU47324 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G20585.1	1.8e-10	51.61	nuclear fusion defective 6	[more]
AT1G28395.2	2.6e-09	39.73	unknown protein	[more]
AT2G33847.1	2.2e-08	45.00	unknown protein	[more]

BLAST of MU47324 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778673349\|ref\|XP_011649977.1\|	9.4e-30	91.89	PREDICTED: protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like ...	[more]
gi\|778673331\|ref\|XP_011649973.1\|	1.4e-28	90.54	PREDICTED: protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like ...	[more]
gi\|778673343\|ref\|XP_011649975.1\|	1.5e-27	90.41	PREDICTED: protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like ...	[more]
gi\|778673327\|ref\|XP_011649972.1\|	1.4e-25	91.18	PREDICTED: protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like ...	[more]
gi\|700208077\|gb\|KGN63196.1\|	1.4e-25	91.18	hypothetical protein Csa_2G408420 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition

Vocabulary: **Biological Process**
Term	Definition
GO:0000741	karyogamy

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000741	karyogamy

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C019347	MELO3C019347	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
15D23D03	15D23D03	EST
15D29F08	15D29F08	EST
A37E06	A37E06	EST
AI04G08	AI04G08	EST
AI05D02	AI05D02	EST
GA22YM15FM1	GA22YM15FM1	EST
PS40A09	PS40A09	EST

InterPro

Analysis Name: InterPro Annotations of melon unigene v4
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33156	FAMILY NOT NAMED	coord: 1..95 score: 1.3