MU44693 (transcribed_cluster) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MU44693
Type	transcribed_cluster
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	No hit
Location	chr12 : 1136897 .. 1137827 (+)
Sequence length	933

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Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

TCCCCTTACCATCGTAGATCATACTCTTATAGCCGGCGAAGATATGATTCTCCATACTATAGGCGACGATATGATTCTCCAGACTACTATAGGCATCATAGGTCATATTCTCGATCCAGCTCACCGTATAGGAGGTGGAGCCGCGACAGGTCATACTCACCTTATGATTACTATTCCCCTGATCCTTACTACAGAAGGCACAGGTACAGGTCAGTTTCTCGGAGCCTTTCGCCAAAGTCAAGGAACGGCAGGCATTACTCCCGAAGTTACTCTCCTGAGCCTAGGAGAAGAACGTTGAGAAACTACTCTCATAGCCCCTCCCGGGAATTGAGGAGAAGTTATTCACGTAGTATTTCCCCTGAACGAAGCAGGAGATCAGGAAGTAGTGTCTATTCATCCAGTATTTCTCCTGAACGAGGCAGAAGCTTAAGGAGTCGCTCTTGCAGCCATACCCCAAGACGACACGAGAGCACACGTAAGAGAGGGTATTCTAGTAGGAGTCGATCAAGAAGTCAAAGTGTAACTTCAAGATCTGTTAGTCCGGCTTGATTTACTGAACTGCTTCCCCTCTGCTACATTCTCATGGTGATGTACGTTTGGAGCTTTTAATGCGAATCAATCAGCTGCAGATGTAAACAACTATTCCCCTTGTCTTAGATGCCTTCACGTTTGAGACGAAATGGTGGGTTGTGGAATAATCTATTTCTGGTTTCATGGCTTATGAGGGGAAACGAAGAAATGTCAACAGGGAATTTTATACGCTTTCAACTGATGTTTGCTTTTAATTCTGTTGGGTTAGTTTGTTAATGAGGGGTGTGAATGTTTTGGTTCAATTTGTCATTTTGATTTCCAACTCGATTTGGGTTGGATGTTGTGCCTTATCTCTTATATGGACATGAAAAGATAACGTACATTTGTGGTTTGCCTCAAAAA

Library


Library category	ESTs
melon AI library	1
melon MNR09P2 library	1
melon CI library	2
melon CM-VEa library	1

Homology

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BLAST of MU44693 vs. NCBI nr
Match: gi|659115137|ref|XP_008457405.1| (PREDICTED: serine/arginine-rich splicing factor 2-like [Cucumis melo])

HSP 1 Score: 63.5 bits (153), Expect = 7.3e-07
Identity = 37/81 (45.68%), Postives = 37/81 (45.68%), Query Frame = 1


Query: 226 LSPKSRNGXXXXXXXXXXXXXXTLRNYSHSPSRELXXXXXXXXXXXXXXXXXXXXXXXXX 285
           LSPKSRNG              TLRNYSHSPSRE                          
Sbjct: 263 LSPKSRNGRHYSRSYSPEPRRRTLRNYSHSPSRESRRSYSRSISPERSRRSGSSVYSSSI 322

Query: 286 XXXXGRSLRSRSCSHTPRRHE 345
               GRSLRSRSCSHTPRRHE
Sbjct: 323 SPERGRSLRSRSCSHTPRRHE 343

Query: 346  405
           
Sbjct: 383  343

Query: 406  465
           
Sbjct: 443  343

Query: 466  469
           
Sbjct: 503  343

The following BLAST results are available for this feature:

BLAST of MU44693 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659115137\|ref\|XP_008457405.1\|	7.3e-07	45.68	PREDICTED: serine/arginine-rich splicing factor 2-like [Cucumis melo]	[more]

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C020575	MELO3C020575	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
AI31G02	AI31G02	EST
CA5YD18FM1	CA5YD18FM1	EST
CI21B08	CI21B08	EST
CI60A11	CI60A11	EST
VEa0006P19	VEa0006P19	EST