CU178214 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU178214
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Inositol transporter 4
Location	Chr1 : 2957271 .. 2957718 (-)
Sequence length	332

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

ACAAAACCCATTTCCAGAATTTTGTCAAATGTGTTGAGCTCATCCATTTTGCTAAAAACCTCACAAAGATTTCTTTTCTTTCTTGGTGGTTTTGTTTTGGAGAGAAATAATAATGGAGGGAGGAATTCATGGGGGAAGCAGCAATAGTGATGATGGTTCTTCAACTTTTAGAGATTGTTTTTCTTTGGCTTGGAAAAATCCATATGTTCTTCGTCTTGCCTTTTCTGCTGGAATTGGTGGCTTTCTTTTTGGCTATGACACTGGAGTCATTTCTGGAGCTCTTCTTTACATTAGGGATGACTTCAAGTCTGTGGACAGCAGCACTGTTTTAC

Library


Library category	ESTs
Cucumber male flower buds	1

Homology

[Close]

BLAST of CU178214 vs. Swiss-Prot
Match: INT2_ARATH (Probable inositol transporter 2 OS=Arabidopsis thaliana GN=INT2 PE=1 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 2.4e-21
Identity = 48/55 (87.27%), Postives = 50/55 (90.91%), Query Frame = 2


Query: 167 FRDCFSLAWKNPYVLRLAFSAGIGGFLFGYDTGVISGALLYIRDDFKSVDSSTVL 226
           F++CFSL WKNPYVLRLAFSAGIGG LFGYDTGVISGALLYIRDDFKSVD +T L
Sbjct: 15  FKECFSLTWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRNTWL 69

Query: 227  286
           
Sbjct: 75   69

Query: 287  332
           
Sbjct: 135  69

[Close]

BLAST of CU178214 vs. Swiss-Prot
Match: INT4_ARATH (Inositol transporter 4 OS=Arabidopsis thaliana GN=INT4 PE=1 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 4.4e-15
Identity = 36/55 (65.45%), Postives = 41/55 (74.55%), Query Frame = 2


Query: 167 FRDCFSLAWKNPYVLRLAFSAGIGGFLFGYDTGVISGALLYIRDDFKSVDSSTVL 226
           F +C+   WK PY++RLA SAGIGG LFGYDTGVISGALL+I++DF  VD  T L
Sbjct: 14  FTECWRTTWKTPYIMRLALSAGIGGLLFGYDTGVISGALLFIKEDFDEVDKKTWL 68

Query: 227  286
           
Sbjct: 74   68

Query: 287  332
           
Sbjct: 134  68

[Close]

BLAST of CU178214 vs. Swiss-Prot
Match: INT3_ARATH (Probable inositol transporter 3 OS=Arabidopsis thaliana GN=INT3 PE=2 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 3.5e-12
Identity = 31/53 (58.49%), Postives = 41/53 (77.36%), Query Frame = 2


Query: 173 DCFSLAWKNPYVLRLAFSAGIGGFLFGYDTGVISGALLYIRDDFKSVDSSTVL 232
           + ++  W+ PY++RLA SAGIGG LFGY+TGVI+GALLYI+++F  VD+ T L
Sbjct: 15  EVWTTTWETPYIMRLALSAGIGGLLFGYNTGVIAGALLYIKEEFGEVDNKTWL 67

Query: 233  292
           
Sbjct: 75   67

Query: 293  332
           
Sbjct: 135  67

[Close]

BLAST of CU178214 vs. Swiss-Prot
Match: INT1_ARATH (Inositol transporter 1 OS=Arabidopsis thaliana GN=INT1 PE=1 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 4.2e-10
Identity = 31/45 (68.89%), Postives = 34/45 (75.56%), Query Frame = 2


Query: 197 NPYVLRLAFSAGIGGFLFGYDTGVISGALLYIRDDFKSVDSSTVL 256
           N Y+L L  +AGIGG LFGYDTGVISGALLYI+DDF+ V  S+ L
Sbjct: 28  NSYILGLTVTAGIGGLLFGYDTGVISGALLYIKDDFEVVKQSSFL 72

Query: 257  316
           
Sbjct: 88   72

Query: 317  332
           
Sbjct: 148  72

[Close]

BLAST of CU178214 vs. TrEMBL
Match: A0A0A0LSE2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G025940 PE=3 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.4e-23
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 2


Query: 164 TFRDCFSLAWKNPYVLRLAFSAGIGGFLFGYDTGVISGALLYIRDDFKSVDSSTVL 223
           TFRDCFSLAWKNPYVLRLAFSAGIGGFLFGYDTGVISGALLYIRDDFKSVDSSTVL
Sbjct: 18  TFRDCFSLAWKNPYVLRLAFSAGIGGFLFGYDTGVISGALLYIRDDFKSVDSSTVL 73

Query: 224  283
           
Sbjct: 78   73

Query: 284  332
           
Sbjct: 138  73

[Close]

BLAST of CU178214 vs. TrEMBL
Match: W9QXB5_9ROSA (Putative inositol transporter 2 OS=Morus notabilis GN=L484_005895 PE=3 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 2.9e-21
Identity = 52/55 (94.55%), Postives = 52/55 (94.55%), Query Frame = 2


Query: 167 FRDCFSLAWKNPYVLRLAFSAGIGGFLFGYDTGVISGALLYIRDDFKSVDSSTVL 226
           FRDCFSLAWKNPYVLRLAFSAGIGG LFGYDTGVISGALLYIRDDFKSVD  TVL
Sbjct: 14  FRDCFSLAWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTVL 68

Query: 227  286
           
Sbjct: 74   68

Query: 287  332
           
Sbjct: 134  68

[Close]

BLAST of CU178214 vs. TrEMBL
Match: M5WN45_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa023920mg PE=3 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 2.9e-21
Identity = 52/55 (94.55%), Postives = 52/55 (94.55%), Query Frame = 2


Query: 167 FRDCFSLAWKNPYVLRLAFSAGIGGFLFGYDTGVISGALLYIRDDFKSVDSSTVL 226
           FRDCFSLAWKNPYVLRLAFSAGIGG LFGYDTGVISGALLYIRDDFKSVD  TVL
Sbjct: 13  FRDCFSLAWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTVL 67

Query: 227  286
           
Sbjct: 73   67

Query: 287  332
           
Sbjct: 133  67

[Close]

BLAST of CU178214 vs. TrEMBL
Match: W1NV85_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00092p00111470 PE=3 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 4.9e-21
Identity = 51/55 (92.73%), Postives = 52/55 (94.55%), Query Frame = 2


Query: 167 FRDCFSLAWKNPYVLRLAFSAGIGGFLFGYDTGVISGALLYIRDDFKSVDSSTVL 226
           FRDCFSLAW+NPYVLRLAFSAGIGG LFGYDTGVISGALLYIRDDFKSVD  TVL
Sbjct: 14  FRDCFSLAWRNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDKETVL 68

Query: 227  286
           
Sbjct: 74   68

Query: 287  332
           
Sbjct: 134  68

[Close]

BLAST of CU178214 vs. TrEMBL
Match: A0A067KP43_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04644 PE=3 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 8.3e-21
Identity = 51/55 (92.73%), Postives = 52/55 (94.55%), Query Frame = 2


Query: 167 FRDCFSLAWKNPYVLRLAFSAGIGGFLFGYDTGVISGALLYIRDDFKSVDSSTVL 226
           FR+CFSLAWKNPYVLRLAFSAGIGG LFGYDTGVISGALLYIRDDFKSVD  TVL
Sbjct: 14  FRECFSLAWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRETVL 68

Query: 227  286
           
Sbjct: 74   68

Query: 287  332
           
Sbjct: 134  68

[Close]

BLAST of CU178214 vs. NCBI nr
Match: gi|778656600|ref|XP_011649369.1| (PREDICTED: probable inositol transporter 2 [Cucumis sativus])

HSP 1 Score: 117.1 bits (292), Expect = 2.0e-23
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 2


Query: 164 TFRDCFSLAWKNPYVLRLAFSAGIGGFLFGYDTGVISGALLYIRDDFKSVDSSTVL 223
           TFRDCFSLAWKNPYVLRLAFSAGIGGFLFGYDTGVISGALLYIRDDFKSVDSSTVL
Sbjct: 18  TFRDCFSLAWKNPYVLRLAFSAGIGGFLFGYDTGVISGALLYIRDDFKSVDSSTVL 73

Query: 224  283
           
Sbjct: 78   73

Query: 284  332
           
Sbjct: 138  73

[Close]

BLAST of CU178214 vs. NCBI nr
Match: gi|659068462|ref|XP_008444543.1| (PREDICTED: probable inositol transporter 2 [Cucumis melo])

HSP 1 Score: 117.1 bits (292), Expect = 2.0e-23
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 2


Query: 164 TFRDCFSLAWKNPYVLRLAFSAGIGGFLFGYDTGVISGALLYIRDDFKSVDSSTVL 223
           TFRDCFSLAWKNPYVLRLAFSAGIGGFLFGYDTGVISGALLYIRDDFKSVDSSTVL
Sbjct: 16  TFRDCFSLAWKNPYVLRLAFSAGIGGFLFGYDTGVISGALLYIRDDFKSVDSSTVL 71

Query: 224  283
           
Sbjct: 76   71

Query: 284  332
           
Sbjct: 136  71

[Close]

BLAST of CU178214 vs. NCBI nr
Match: gi|645238086|ref|XP_008225512.1| (PREDICTED: probable inositol transporter 2 [Prunus mume])

HSP 1 Score: 109.0 bits (271), Expect = 5.3e-21
Identity = 52/55 (94.55%), Postives = 52/55 (94.55%), Query Frame = 2


Query: 167 FRDCFSLAWKNPYVLRLAFSAGIGGFLFGYDTGVISGALLYIRDDFKSVDSSTVL 226
           FRDCFSLAWKNPYVLRLAFSAGIGG LFGYDTGVISGALLYIRDDFKSVD  TVL
Sbjct: 13  FRDCFSLAWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTVL 67

Query: 227  286
           
Sbjct: 73   67

Query: 287  332
           
Sbjct: 133  67

[Close]

BLAST of CU178214 vs. NCBI nr
Match: gi|595889967|ref|XP_007213472.1| (hypothetical protein PRUPE_ppa023920mg [Prunus persica])

HSP 1 Score: 109.0 bits (271), Expect = 5.3e-21
Identity = 52/55 (94.55%), Postives = 52/55 (94.55%), Query Frame = 2


Query: 167 FRDCFSLAWKNPYVLRLAFSAGIGGFLFGYDTGVISGALLYIRDDFKSVDSSTVL 226
           FRDCFSLAWKNPYVLRLAFSAGIGG LFGYDTGVISGALLYIRDDFKSVD  TVL
Sbjct: 13  FRDCFSLAWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTVL 67

Query: 227  286
           
Sbjct: 73   67

Query: 287  332
           
Sbjct: 133  67

[Close]

BLAST of CU178214 vs. NCBI nr
Match: gi|703063612|ref|XP_010087000.1| (putative inositol transporter 2 [Morus notabilis])

HSP 1 Score: 109.0 bits (271), Expect = 5.3e-21
Identity = 52/55 (94.55%), Postives = 52/55 (94.55%), Query Frame = 2


Query: 167 FRDCFSLAWKNPYVLRLAFSAGIGGFLFGYDTGVISGALLYIRDDFKSVDSSTVL 226
           FRDCFSLAWKNPYVLRLAFSAGIGG LFGYDTGVISGALLYIRDDFKSVD  TVL
Sbjct: 14  FRDCFSLAWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTVL 68

Query: 227  286
           
Sbjct: 74   68

Query: 287  332
           
Sbjct: 134  68

The following BLAST results are available for this feature:

BLAST of CU178214 vs. Swiss-Prot


Match Name	E-value	Identity	Description
INT2_ARATH	2.4e-21	87.27	Probable inositol transporter 2 OS=Arabidopsis thaliana GN=INT2 PE=1 SV=1	[more]
INT4_ARATH	4.4e-15	65.45	Inositol transporter 4 OS=Arabidopsis thaliana GN=INT4 PE=1 SV=1	[more]
INT3_ARATH	3.5e-12	58.49	Probable inositol transporter 3 OS=Arabidopsis thaliana GN=INT3 PE=2 SV=1	[more]
INT1_ARATH	4.2e-10	68.89	Inositol transporter 1 OS=Arabidopsis thaliana GN=INT1 PE=1 SV=1	[more]

BLAST of CU178214 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LSE2_CUCSA	1.4e-23	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G025940 PE=3 SV=1	[more]
W9QXB5_9ROSA	2.9e-21	94.55	Putative inositol transporter 2 OS=Morus notabilis GN=L484_005895 PE=3 SV=1	[more]
M5WN45_PRUPE	2.9e-21	94.55	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa023920mg PE=3 SV=1	[more]
W1NV85_AMBTC	4.9e-21	92.73	Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00092p00111470 PE=3 SV=...	[more]
A0A067KP43_JATCU	8.3e-21	92.73	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04644 PE=3 SV=1	[more]

BLAST of CU178214 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778656600\|ref\|XP_011649369.1\|	2.0e-23	100.00	PREDICTED: probable inositol transporter 2 [Cucumis sativus]	[more]
gi\|659068462\|ref\|XP_008444543.1\|	2.0e-23	100.00	PREDICTED: probable inositol transporter 2 [Cucumis melo]	[more]
gi\|645238086\|ref\|XP_008225512.1\|	5.3e-21	94.55	PREDICTED: probable inositol transporter 2 [Prunus mume]	[more]
gi\|595889967\|ref\|XP_007213472.1\|	5.3e-21	94.55	hypothetical protein PRUPE_ppa023920mg [Prunus persica]	[more]
gi\|703063612\|ref\|XP_010087000.1\|	5.3e-21	94.55	putative inositol transporter 2 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa1G025940	Csa1G025940	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
csa02-2ms3-b08	csa02-2ms3-b08	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR23500	FAMILY NOT NAMED	coord: 1..73 score: 3.7
None	No IPR available	PANTHER	PTHR23500:SF149	INOSITOL TRANSPORTER 4-RELATED	coord: 1..73 score: 3.7