CU178056 (transcribed_cluster) Cucumber (Chinese Long) v2

NameCU178056
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionImportin subunit alpha
LocationChr4 : 10861188 .. 10861760 (-)
Sequence length219
The following sequences are available for this feature:

transcribed_cluster sequence

TTCCATTCGGATTTCTCCCATTGCGCCGTTCTATAGAGTTTCAATCCATTTCCTACTTCTCTTCTCAATAGTGAATACATCCCTTCCATGGCCGACTCTAGCCTGCCTTCTCCAAGAAGAGATTCTATCAAGTCTTCGGTTGGGAGTGTTGCTGCTAATCGAAGACGACAGCATGCGATTGCGGTGGGAAAGGAAAGAAGGGACTTGTTGGTGCGCGCG
BLAST of CU178056 vs. Swiss-Prot
Match: IMPA9_ARATH (Importin subunit alpha-9 OS=Arabidopsis thaliana GN=IMPA9 PE=3 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.3e-07
Identity = 29/44 (65.91%), Postives = 31/44 (70.45%), Query Frame = 1

Query: 88  MADSSLPSPRRDSIKSSVGSVAANRRRQHAIAVGKERRDLLVRA 147
           MAD    S RRD IKSSVG+VA  RRR+ A+ V KERR+LLVRA
Sbjct: 1   MADDGSASNRRDPIKSSVGNVAGQRRRKQAVTVAKERRELLVRA 44

Query: 148 207
           
Sbjct: 61  44

Query: 208 220
           
Sbjct: 121 44

BLAST of CU178056 vs. TrEMBL
Match: A0A0A0KZ40_CUCSA (Importin subunit alpha OS=Cucumis sativus GN=Csa_4G280460 PE=3 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 2.2e-14
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = 1

Query: 88  MADSSLPSPRRDSIKSSVGSVAANRRRQHAIAVGKERRDLLVRA 147
           MADSSLPSPRRDSIKSSVGSVAANRRRQHAIAVGKERRDLLVRA
Sbjct: 1   MADSSLPSPRRDSIKSSVGSVAANRRRQHAIAVGKERRDLLVRA 44

Query: 148 207
           
Sbjct: 61  44

Query: 208 220
           
Sbjct: 121 44

BLAST of CU178056 vs. TrEMBL
Match: V7BG28_PHAVU (Importin subunit alpha OS=Phaseolus vulgaris GN=PHAVU_007G164500g PE=3 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 5.3e-08
Identity = 32/44 (72.73%), Postives = 38/44 (86.36%), Query Frame = 1

Query: 88  MADSSLPSPRRDSIKSSVGSVAANRRRQHAIAVGKERRDLLVRA 147
           MADS + S RRD IKSSVG+ AA+RRRQHA+AVGKERR+ L+RA
Sbjct: 1   MADSGVTSNRRDPIKSSVGNAAASRRRQHAVAVGKERRESLMRA 44

Query: 148 207
           
Sbjct: 61  44

Query: 208 220
           
Sbjct: 121 44

BLAST of CU178056 vs. TrEMBL
Match: D7TQI1_VITVI (Importin subunit alpha OS=Vitis vinifera GN=VIT_08s0040g02290 PE=3 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.2e-07
Identity = 33/43 (76.74%), Postives = 35/43 (81.40%), Query Frame = 1

Query: 88  MADSSLPSPRRDSIKSSVGSVAANRRRQHAIAVGKERRDLLVR 147
           MAD  L S RRD IKSSVG+VAANRRRQ AI VGKERR+ LVR
Sbjct: 1   MADDGLASHRRDPIKSSVGNVAANRRRQQAITVGKERREALVR 43

Query: 148 207
           
Sbjct: 61  43

Query: 208 217
           
Sbjct: 121 43

BLAST of CU178056 vs. TrEMBL
Match: A0A151STB7_CAJCA (Importin subunit alpha OS=Cajanus cajan GN=KK1_004306 PE=3 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.6e-07
Identity = 31/44 (70.45%), Postives = 37/44 (84.09%), Query Frame = 1

Query: 88  MADSSLPSPRRDSIKSSVGSVAANRRRQHAIAVGKERRDLLVRA 147
           MADS + S RRD IKSSVG+ AA+RRRQHA+ VGKERR+ L+RA
Sbjct: 1   MADSGVTSNRRDPIKSSVGNAAASRRRQHAVTVGKERRESLMRA 44

Query: 148 207
           
Sbjct: 61  44

Query: 208 220
           
Sbjct: 121 44

BLAST of CU178056 vs. TrEMBL
Match: K7LHI9_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.6e-07
Identity = 31/44 (70.45%), Postives = 36/44 (81.82%), Query Frame = 1

Query: 88  MADSSLPSPRRDSIKSSVGSVAANRRRQHAIAVGKERRDLLVRA 147
           MADS   S RRD IKSSVG+ AA+RRRQHA+ VGKERR+ L+RA
Sbjct: 1   MADSGFTSDRRDPIKSSVGNAAASRRRQHAVTVGKERRESLMRA 44

Query: 148 207
           
Sbjct: 61  44

Query: 208 220
           
Sbjct: 121 44

BLAST of CU178056 vs. NCBI nr
Match: gi|778692950|ref|XP_004142168.2| (PREDICTED: importin subunit alpha-9 isoform X1 [Cucumis sativus])

HSP 1 Score: 82.4 bits (202), Expect = 3.6e-13
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = 1

Query: 88  MADSSLPSPRRDSIKSSVGSVAANRRRQHAIAVGKERRDLLVRA 147
           MADSSLPSPRRDSIKSSVGSVAANRRRQHAIAVGKERRDLLVRA
Sbjct: 1   MADSSLPSPRRDSIKSSVGSVAANRRRQHAIAVGKERRDLLVRA 44

Query: 148 207
           
Sbjct: 61  44

Query: 208 220
           
Sbjct: 121 44

BLAST of CU178056 vs. NCBI nr
Match: gi|659097784|ref|XP_008449812.1| (PREDICTED: importin subunit alpha-2 isoform X1 [Cucumis melo])

HSP 1 Score: 78.6 bits (192), Expect = 5.1e-12
Identity = 41/44 (93.18%), Postives = 43/44 (97.73%), Query Frame = 1

Query: 88  MADSSLPSPRRDSIKSSVGSVAANRRRQHAIAVGKERRDLLVRA 147
           MADSSLPSPRRDSIKSSVG VAA+RRRQHA+AVGKERRDLLVRA
Sbjct: 1   MADSSLPSPRRDSIKSSVGGVAAHRRRQHAVAVGKERRDLLVRA 44

Query: 148 207
           
Sbjct: 61  44

Query: 208 220
           
Sbjct: 121 44

BLAST of CU178056 vs. NCBI nr
Match: gi|720090157|ref|XP_010245001.1| (PREDICTED: importin subunit alpha-2-like [Nelumbo nucifera])

HSP 1 Score: 63.5 bits (153), Expect = 1.7e-07
Identity = 34/44 (77.27%), Postives = 38/44 (86.36%), Query Frame = 1

Query: 88  MADSSLPSPRRDSIKSSVGSVAANRRRQHAIAVGKERRDLLVRA 147
           MAD SLPS RRD IKSSVG+VAA+RRRQ+A+ VGKERR  LVRA
Sbjct: 1   MADESLPSHRRDPIKSSVGNVAAHRRRQYAVTVGKERRGALVRA 44

Query: 148 207
           
Sbjct: 61  44

Query: 208 220
           
Sbjct: 121 44

BLAST of CU178056 vs. NCBI nr
Match: gi|593687763|ref|XP_007144541.1| (hypothetical protein PHAVU_007G164500g [Phaseolus vulgaris])

HSP 1 Score: 61.2 bits (147), Expect = 8.5e-07
Identity = 32/44 (72.73%), Postives = 38/44 (86.36%), Query Frame = 1

Query: 88  MADSSLPSPRRDSIKSSVGSVAANRRRQHAIAVGKERRDLLVRA 147
           MADS + S RRD IKSSVG+ AA+RRRQHA+AVGKERR+ L+RA
Sbjct: 1   MADSGVTSNRRDPIKSSVGNAAASRRRQHAVAVGKERRESLMRA 44

Query: 148 207
           
Sbjct: 61  44

Query: 208 220
           
Sbjct: 121 44

BLAST of CU178056 vs. NCBI nr
Match: gi|1009168551|ref|XP_015902720.1| (PREDICTED: importin subunit alpha-9 [Ziziphus jujuba])

HSP 1 Score: 60.5 bits (145), Expect = 1.4e-06
Identity = 32/44 (72.73%), Postives = 37/44 (84.09%), Query Frame = 1

Query: 88  MADSSLPSPRRDSIKSSVGSVAANRRRQHAIAVGKERRDLLVRA 147
           MAD +  S RRD IKSSVG+VAA+RRRQHA+ VGKERR+ LVRA
Sbjct: 1   MADDAYTSHRRDPIKSSVGNVAAHRRRQHAVTVGKERRESLVRA 44

Query: 148 207
           
Sbjct: 61  44

Query: 208 220
           
Sbjct: 121 44

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
IMPA9_ARATH1.3e-0765.91Importin subunit alpha-9 OS=Arabidopsis thaliana GN=IMPA9 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0KZ40_CUCSA2.2e-14100.00Importin subunit alpha OS=Cucumis sativus GN=Csa_4G280460 PE=3 SV=1[more]
V7BG28_PHAVU5.3e-0872.73Importin subunit alpha OS=Phaseolus vulgaris GN=PHAVU_007G164500g PE=3 SV=1[more]
D7TQI1_VITVI1.2e-0776.74Importin subunit alpha OS=Vitis vinifera GN=VIT_08s0040g02290 PE=3 SV=1[more]
A0A151STB7_CAJCA1.6e-0770.45Importin subunit alpha OS=Cajanus cajan GN=KK1_004306 PE=3 SV=1[more]
K7LHI9_SOYBN1.6e-0770.45Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|778692950|ref|XP_004142168.2|3.6e-13100.00PREDICTED: importin subunit alpha-9 isoform X1 [Cucumis sativus][more]
gi|659097784|ref|XP_008449812.1|5.1e-1293.18PREDICTED: importin subunit alpha-2 isoform X1 [Cucumis melo][more]
gi|720090157|ref|XP_010245001.1|1.7e-0777.27PREDICTED: importin subunit alpha-2-like [Nelumbo nucifera][more]
gi|593687763|ref|XP_007144541.1|8.5e-0772.73hypothetical protein PHAVU_007G164500g [Phaseolus vulgaris][more]
gi|1009168551|ref|XP_015902720.1|1.4e-0672.73PREDICTED: importin subunit alpha-9 [Ziziphus jujuba][more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa4G280460Csa4G280460gene
Csa4G280470Csa4G280470gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
csa01-1ms3-d10csa01-1ms3-d10EST