CU175875 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU175875
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Phosphoglycolate phosphatase
Location	Chr1 : 26202914 .. 26204144 (+)
Sequence length	237

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

AGGTAAGAAGATAGAACTAAAGCCAGGCTTTTCTGTATTGGAGCACGATGAGGATGTGGGGAGCTGTTGTGGTTGGATTTTGATCGATACTTTAACTACTACAAAGTGCAGTATGGAACACTCTGCATAAGAGAAAATCCTGGTTGCCTCTTCATTGCAACTAATCGTGATGCTGTCACTCATCTGACAGATGCGACAAGGAGGTGGGGCAGGGTTGGTGGTTACAAGTTGGGTTGG

Library


Library category	ESTs
hermaphrodite flower library	1

Homology

[Close]

BLAST of CU175875 vs. Swiss-Prot
Match: PGP1A_ARATH (Phosphoglycolate phosphatase 1A, chloroplastic OS=Arabidopsis thaliana GN=PGLP1A PE=1 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 3.4e-17
Identity = 42/52 (80.77%), Postives = 43/52 (82.69%), Query Frame = 1


Query: 79  FDRYFNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDATRRWGRVGGYKLG 138
           FDRYFNYYK+QYGTLCIRENPGCLFIATNRDAVTHLTDA + W   GG  +G
Sbjct: 217 FDRYFNYYKIQYGTLCIRENPGCLFIATNRDAVTHLTDA-QEWAG-GGSMVG 266

Query: 139  198
           
Sbjct: 277  266

Query: 199  235
           
Sbjct: 337  266

[Close]

BLAST of CU175875 vs. Swiss-Prot
Match: PGP1B_ARATH (Phosphoglycolate phosphatase 1B, chloroplastic OS=Arabidopsis thaliana GN=PGLP1B PE=1 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 3.4e-17
Identity = 42/52 (80.77%), Postives = 43/52 (82.69%), Query Frame = 1


Query: 79  FDRYFNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDATRRWGRVGGYKLG 138
           FDRYFNYYK+QYGTLCIRENPGCLFIATNRDAVTHLTDA + W   GG  +G
Sbjct: 217 FDRYFNYYKIQYGTLCIRENPGCLFIATNRDAVTHLTDA-QEWAG-GGSMVG 266

Query: 139  198
           
Sbjct: 277  266

Query: 199  235
           
Sbjct: 337  266

[Close]

BLAST of CU175875 vs. Swiss-Prot
Match: PGP2_ARATH (Phosphoglycolate phosphatase 2 OS=Arabidopsis thaliana GN=PGLP2 PE=1 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 5.6e-12
Identity = 32/46 (69.57%), Postives = 34/46 (73.91%), Query Frame = 1


Query: 82  DRYFNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDATRRWGRVG 141
           D   NYYK+QYGTLC+RENPGCLFIATNRDAV H+TD  + W   G
Sbjct: 158 DPNINYYKLQYGTLCVRENPGCLFIATNRDAVGHMTD-LQEWPGAG 202

Query: 142  201
           
Sbjct: 218  202

Query: 202  220
           
Sbjct: 278  202

[Close]

BLAST of CU175875 vs. TrEMBL
Match: A0A0D2QQG9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G088000 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 5.8e-16
Identity = 42/53 (79.25%), Postives = 44/53 (83.02%), Query Frame = 1


Query: 79  FDRYFNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDATRRWGRVGGYKLGW 138
           FDRYFNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDA + W     + L W
Sbjct: 231 FDRYFNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDA-QEWAGSIHFSLNW 282

Query: 139  198
           
Sbjct: 291  282

Query: 199  238
           
Sbjct: 351  282

[Close]

BLAST of CU175875 vs. TrEMBL
Match: A0A0D2QQG9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G088000 PE=4 SV=1)

HSP 1 Score: 35.8 bits (81), Expect = 2.8e+01
Identity = 16/21 (76.19%), Postives = 20/21 (95.24%), Query Frame = 2


Query: 2   GKKIELKPGFSVLEHDEDVGS 61
           GKKIELKPGF ++EHD+DVG+
Sbjct: 207 GKKIELKPGF-LMEHDKDVGA 226

Query: 62   65
           
Sbjct: 267  226

HSP 2 Score: 89.0 bits (219), Expect = 2.9e-15
Identity = 43/52 (82.69%), Postives = 45/52 (86.54%), Query Frame = 1


Query: 79  FDRYFNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDATRRWGRVGGYKLG 138
           FDRYFNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDA + W   GG  +G
Sbjct: 227 FDRYFNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDA-QEWAG-GGSMVG 276

Query: 139  198
           
Sbjct: 287  276

Query: 199  235
           
Sbjct: 347  276

[Close]

BLAST of CU175875 vs. TrEMBL
Match: I3T999_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 2.9e-15
Identity = 43/52 (82.69%), Postives = 45/52 (86.54%), Query Frame = 1


Query: 79  FDRYFNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDATRRWGRVGGYKLG 138
           FDRYFNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDA + W   GG  +G
Sbjct: 224 FDRYFNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDA-QEWAG-GGSMVG 273

Query: 139  198
           
Sbjct: 284  273

Query: 199  235
           
Sbjct: 344  273

[Close]

BLAST of CU175875 vs. TrEMBL
Match: I3T999_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 37.4 bits (85), Expect = 9.8e+00
Identity = 17/21 (80.95%), Postives = 20/21 (95.24%), Query Frame = 2


Query: 2   GKKIELKPGFSVLEHDEDVGS 61
           GKKIELKPGF ++EHDEDVG+
Sbjct: 200 GKKIELKPGF-LMEHDEDVGA 219

Query: 62   65
           
Sbjct: 260  219

HSP 2 Score: 89.0 bits (219), Expect = 2.9e-15
Identity = 43/52 (82.69%), Postives = 45/52 (86.54%), Query Frame = 1


Query: 79  FDRYFNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDATRRWGRVGGYKLG 138
           FDRYFNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDA + W   GG  +G
Sbjct: 222 FDRYFNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDA-QEWAG-GGSMVG 271

Query: 139  198
           
Sbjct: 282  271

Query: 199  235
           
Sbjct: 342  271

[Close]

BLAST of CU175875 vs. TrEMBL
Match: A0A0D9W6K5_9ORYZ (Uncharacterized protein OS=Leersia perrieri PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 2.9e-15
Identity = 43/52 (82.69%), Postives = 45/52 (86.54%), Query Frame = 1


Query: 79  FDRYFNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDATRRWGRVGGYKLG 138
           FDRYFNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDA + W   GG  +G
Sbjct: 191 FDRYFNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDA-QEWAG-GGSMVG 240

Query: 139  198
           
Sbjct: 251  240

Query: 199  235
           
Sbjct: 311  240

[Close]

BLAST of CU175875 vs. NCBI nr
Match: gi|743781963|ref|XP_011007944.1| (PREDICTED: phosphoglycolate phosphatase 1B, chloroplastic-like [Populus euphratica])

HSP 1 Score: 93.6 bits (231), Expect = 1.7e-16
Identity = 44/52 (84.62%), Postives = 46/52 (88.46%), Query Frame = 1


Query: 79  FDRYFNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDATRRWGRVGGYKLG 138
           FDRYFNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDA + W  VGG  +G
Sbjct: 226 FDRYFNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDA-QEWA-VGGSMVG 275

Query: 139  198
           
Sbjct: 286  275

Query: 199  235
           
Sbjct: 346  275

[Close]

BLAST of CU175875 vs. NCBI nr
Match: gi|763751803|gb|KJB19191.1| (hypothetical protein B456_003G088000 [Gossypium raimondii])

HSP 1 Score: 93.2 bits (230), Expect = 2.2e-16
Identity = 42/53 (79.25%), Postives = 44/53 (83.02%), Query Frame = 1


Query: 79  FDRYFNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDATRRWGRVGGYKLGW 138
           FDRYFNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDA + W     + L W
Sbjct: 231 FDRYFNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDA-QEWAGSIHFSLNW 282

Query: 139  198
           
Sbjct: 291  282

Query: 199  238
           
Sbjct: 351  282

[Close]

BLAST of CU175875 vs. NCBI nr
Match: gi|629120118|gb|KCW84608.1| (hypothetical protein EUGRSUZ_B01439 [Eucalyptus grandis])

HSP 1 Score: 91.3 bits (225), Expect = 8.3e-16
Identity = 43/52 (82.69%), Postives = 45/52 (86.54%), Query Frame = 1


Query: 79  FDRYFNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDATRRWGRVGGYKLG 138
           FDRYFNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDA + W   GG  +G
Sbjct: 161 FDRYFNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDA-QEWAG-GGSMVG 210

Query: 139  198
           
Sbjct: 221  210

Query: 199  235
           
Sbjct: 281  210

[Close]

BLAST of CU175875 vs. NCBI nr
Match: gi|475589243|gb|EMT21102.1| (Phosphoglycolate phosphatase [Aegilops tauschii])

HSP 1 Score: 91.3 bits (225), Expect = 8.3e-16
Identity = 43/52 (82.69%), Postives = 45/52 (86.54%), Query Frame = 1


Query: 79  FDRYFNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDATRRWGRVGGYKLG 138
           FDRYFNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDA + W   GG  +G
Sbjct: 161 FDRYFNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDA-QEWAG-GGSMVG 210

Query: 139  198
           
Sbjct: 221  210

Query: 199  235
           
Sbjct: 281  210

[Close]

BLAST of CU175875 vs. NCBI nr
Match: gi|672168349|ref|XP_008804176.1| (PREDICTED: phosphoglycolate phosphatase 1B, chloroplastic-like [Phoenix dactylifera])

HSP 1 Score: 91.3 bits (225), Expect = 8.3e-16
Identity = 43/52 (82.69%), Postives = 45/52 (86.54%), Query Frame = 1


Query: 79  FDRYFNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDATRRWGRVGGYKLG 138
           FDRYFNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDA + W   GG  +G
Sbjct: 244 FDRYFNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDA-QEWAG-GGSMVG 293

Query: 139  198
           
Sbjct: 304  293

Query: 199  235
           
Sbjct: 364  293

The following BLAST results are available for this feature:

BLAST of CU175875 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PGP1A_ARATH	3.4e-17	80.77	Phosphoglycolate phosphatase 1A, chloroplastic OS=Arabidopsis thaliana GN=PGLP1A...	[more]
PGP1B_ARATH	3.4e-17	80.77	Phosphoglycolate phosphatase 1B, chloroplastic OS=Arabidopsis thaliana GN=PGLP1B...	[more]
PGP2_ARATH	5.6e-12	69.57	Phosphoglycolate phosphatase 2 OS=Arabidopsis thaliana GN=PGLP2 PE=1 SV=1	[more]

BLAST of CU175875 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0D2QQG9_GOSRA	5.8e-16	79.25	Uncharacterized protein OS=Gossypium raimondii GN=B456_003G088000 PE=4 SV=1	[more]
A0A0D2QQG9_GOSRA	2.8e+01	76.19	Uncharacterized protein OS=Gossypium raimondii GN=B456_003G088000 PE=4 SV=1	[more]
I3T999_LOTJA	2.9e-15	82.69	Uncharacterized protein OS=Lotus japonicus PE=2 SV=1	[more]
I3T999_LOTJA	9.8e+00	80.95	Uncharacterized protein OS=Lotus japonicus PE=2 SV=1	[more]
A0A0D9W6K5_9ORYZ	2.9e-15	82.69	Uncharacterized protein OS=Leersia perrieri PE=4 SV=1	[more]

BLAST of CU175875 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|743781963\|ref\|XP_011007944.1\|	1.7e-16	84.62	PREDICTED: phosphoglycolate phosphatase 1B, chloroplastic-like [Populus euphrati...	[more]
gi\|763751803\|gb\|KJB19191.1\|	2.2e-16	79.25	hypothetical protein B456_003G088000 [Gossypium raimondii]	[more]
gi\|629120118\|gb\|KCW84608.1\|	8.3e-16	82.69	hypothetical protein EUGRSUZ_B01439 [Eucalyptus grandis]	[more]
gi\|475589243\|gb\|EMT21102.1\|	8.3e-16	82.69	Phosphoglycolate phosphatase [Aegilops tauschii]	[more]
gi\|672168349\|ref\|XP_008804176.1\|	8.3e-16	82.69	PREDICTED: phosphoglycolate phosphatase 1B, chloroplastic-like [Phoenix dactylif...	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR023215	Nitrophenylphosphatase-like domain

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa1G654900	Csa1G654900	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
H0178572	H0178572	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023215	Nitrophenylphosphatase-like domain	GENE3D	G3DSA:3.40.50.10410		coord: 5..49 score: 6.8
None	No IPR available	PANTHER	PTHR19288	4-NITROPHENYLPHOSPHATASE-RELATED	coord: 5..49 score: 1.6
None	No IPR available	PANTHER	PTHR19288:SF33	PHOSPHOGLYCOLATE PHOSPHATASE 2	coord: 5..49 score: 1.6