CU174612 (transcribed_cluster) Cucumber (Chinese Long) v2

NameCU174612
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr4 : 11389761 .. 11389940 (-)
Sequence length179
The following sequences are available for this feature:

transcribed_cluster sequence

GGAGGTGTGTGGCGGTGATGATACTTTGGAGGAAATTTTGAGTGATGTTGATGCTTCGGTAAATCAAAACCGAGTTCAGGTTTTTTGATAGGTAGCAAAGCATCGTTGAATTGAGCAGCAACGACGGAGGCAGTAATGAGGCACATTGCCACCGCTGAGAGCAACTGAGGCCAATGCCT
BLAST of CU174612 vs. TrEMBL
Match: A0A0A0L0P1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G291360 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 4.9e-28
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = -1

Query: 3   RHWPQLLSAVAMCLITASVVAAQFNDALLPIKKPELGFDLPKHQHHSKFPPKYHHRHTP 62
           RHWPQLLSAVAMCLITASVVAAQFNDALLPIKKPELGFDLPKHQHHSKFPPKYHHRHTP
Sbjct: 8   RHWPQLLSAVAMCLITASVVAAQFNDALLPIKKPELGFDLPKHQHHSKFPPKYHHRHTP 66

Query: 63  122
           
Sbjct: 68  66

Query: 123 180
           
Sbjct: 128 66

BLAST of CU174612 vs. NCBI nr
Match: gi|778697644|ref|XP_011654367.1| (PREDICTED: extensin-2-like [Cucumis sativus])

HSP 1 Score: 126.7 bits (317), Expect = 1.3e-26
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = -1

Query: 3   RHWPQLLSAVAMCLITASVVAAQFNDALLPIKKPELGFDLPKHQHHSKFPPKYHHRHTP 62
           RHWPQLLSAVAMCLITASVVAAQFNDALLPIKKPELGFDLPKHQHHSKFPPKYHHRHTP
Sbjct: 8   RHWPQLLSAVAMCLITASVVAAQFNDALLPIKKPELGFDLPKHQHHSKFPPKYHHRHTP 66

Query: 63  122
           
Sbjct: 68  66

Query: 123 180
           
Sbjct: 128 66

BLAST of CU174612 vs. NCBI nr
Match: gi|700199014|gb|KGN54172.1| (hypothetical protein Csa_4G291360 [Cucumis sativus])

HSP 1 Score: 126.7 bits (317), Expect = 1.3e-26
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = -1

Query: 3   RHWPQLLSAVAMCLITASVVAAQFNDALLPIKKPELGFDLPKHQHHSKFPPKYHHRHTP 62
           RHWPQLLSAVAMCLITASVVAAQFNDALLPIKKPELGFDLPKHQHHSKFPPKYHHRHTP
Sbjct: 8   RHWPQLLSAVAMCLITASVVAAQFNDALLPIKKPELGFDLPKHQHHSKFPPKYHHRHTP 66

Query: 63  122
           
Sbjct: 68  66

Query: 123 180
           
Sbjct: 128 66

BLAST of CU174612 vs. NCBI nr
Match: gi|659097621|ref|XP_008449723.1| (PREDICTED: extensin-2-like isoform X1 [Cucumis melo])

HSP 1 Score: 109.0 bits (271), Expect = 2.9e-21
Identity = 52/59 (88.14%), Postives = 55/59 (93.22%), Query Frame = -1

Query: 3   RHWPQLLSAVAMCLITASVVAAQFNDALLPIKKPELGFDLPKHQHHSKFPPKYHHRHTP 62
           RHWPQLLSAVAMCLI A+VVAAQF+DALLPIKKPELGFDLPKHQHH+ FPPKY H HTP
Sbjct: 8   RHWPQLLSAVAMCLIAATVVAAQFDDALLPIKKPELGFDLPKHQHHTNFPPKYRH-HTP 65

Query: 63  122
           
Sbjct: 68  65

Query: 123 180
           
Sbjct: 128 65

BLAST of CU174612 vs. NCBI nr
Match: gi|659097623|ref|XP_008449724.1| (PREDICTED: extensin-2-like isoform X2 [Cucumis melo])

HSP 1 Score: 109.0 bits (271), Expect = 2.9e-21
Identity = 52/59 (88.14%), Postives = 55/59 (93.22%), Query Frame = -1

Query: 3   RHWPQLLSAVAMCLITASVVAAQFNDALLPIKKPELGFDLPKHQHHSKFPPKYHHRHTP 62
           RHWPQLLSAVAMCLI A+VVAAQF+DALLPIKKPELGFDLPKHQHH+ FPPKY H HTP
Sbjct: 8   RHWPQLLSAVAMCLIAATVVAAQFDDALLPIKKPELGFDLPKHQHHTNFPPKYRH-HTP 65

Query: 63  122
           
Sbjct: 68  65

Query: 123 180
           
Sbjct: 128 65

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0L0P1_CUCSA4.9e-28100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G291360 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|778697644|ref|XP_011654367.1|1.3e-26100.00PREDICTED: extensin-2-like [Cucumis sativus][more]
gi|700199014|gb|KGN54172.1|1.3e-26100.00hypothetical protein Csa_4G291360 [Cucumis sativus][more]
gi|659097621|ref|XP_008449723.1|2.9e-2188.14PREDICTED: extensin-2-like isoform X1 [Cucumis melo][more]
gi|659097623|ref|XP_008449724.1|2.9e-2188.14PREDICTED: extensin-2-like isoform X2 [Cucumis melo][more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa4G291360Csa4G291360gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
H0170060H0170060EST