CU173454 (transcribed_cluster) Cucumber (Chinese Long) v2

Overview
NameCU173454
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionCalcium-binding EF hand family protein
LocationChr1 : 27869861 .. 27870043 (-)
Sequence length183
Genome Viewer
Sequences
The following sequences are available for this feature:

transcribed_cluster sequence

GAAAACCAATATTAATTATTCTCTGTCGCTCTTCTTTCTCTTAAAATAAAATGAGTGTGGCTTTTCTTAATGATACAACAGTTACAAACTTCATCAATGACACCAAGATATTTGACGATTGTGTCAAGGAAAGTTTTAAGAAACTCGACACGGACAATGATGGGTTTCTCAACATGAATGAAC
Homology
[Close]
BLAST of CU173454 vs. TrEMBL
Match: A0A0A0LYD8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G695380 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 6.8e-17
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = 3 

Query: 51  MSVAFLNDTTVTNFINDTKIFDDCVKESFKKLDTDNDGFLNMNE 110
           MSVAFLNDTTVTNFINDTKIFDDCVKESFKKLDTDNDGFLNMNE
Sbjct: 1   MSVAFLNDTTVTNFINDTKIFDDCVKESFKKLDTDNDGFLNMNE 44

Query: 111  170
           
Sbjct: 61   44

Query: 171  183
           
Sbjct: 121  44

[Close]
BLAST of CU173454 vs. NCBI nr
Match: gi|449449633|ref|XP_004142569.1| (PREDICTED: uncharacterized protein LOC101222885 [Cucumis sativus])

HSP 1 Score: 91.7 bits (226), Expect = 4.8e-16
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = 3 

Query: 51  MSVAFLNDTTVTNFINDTKIFDDCVKESFKKLDTDNDGFLNMNE 110
           MSVAFLNDTTVTNFINDTKIFDDCVKESFKKLDTDNDGFLNMNE
Sbjct: 1   MSVAFLNDTTVTNFINDTKIFDDCVKESFKKLDTDNDGFLNMNE 44

Query: 111  170
           
Sbjct: 61   44

Query: 171  183
           
Sbjct: 121  44

[Close]
BLAST of CU173454 vs. NCBI nr
Match: gi|659125605|ref|XP_008462771.1| (PREDICTED: uncharacterized protein LOC103501058 [Cucumis melo])

HSP 1 Score: 87.0 bits (214), Expect = 1.2e-14
Identity = 42/44 (95.45%), Postives = 42/44 (95.45%), Query Frame = 3 

Query: 51  MSVAFLNDTTVTNFINDTKIFDDCVKESFKKLDTDNDGFLNMNE 110
           MSVAFLNDTTVTNFINDTKIFDDCVKESFKKLD DNDGFLN NE
Sbjct: 1   MSVAFLNDTTVTNFINDTKIFDDCVKESFKKLDRDNDGFLNKNE 44

Query: 111  170
           
Sbjct: 61   44

Query: 171  183
           
Sbjct: 121  44

The following BLAST results are available for this feature:
BLAST of CU173454 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LYD8_CUCSA6.8e-17100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G695380 PE=4 SV=1[more]
BLAST of CU173454 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449449633|ref|XP_004142569.1|4.8e-16100.00PREDICTED: uncharacterized protein LOC101222885 [Cucumis sativus][more]
gi|659125605|ref|XP_008462771.1|1.2e-1495.45PREDICTED: uncharacterized protein LOC103501058 [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this transcribed_cluster:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR011992EF-hand-dom_pair
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This transcribed_cluster is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding
Relationships

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa1G695380Csa1G695380gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
H0161480H0161480EST


InterPro
Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002048EF-hand domainPROFILEPS50222EF_HAND_2coord: 20..45
score: 9
IPR011992EF-hand domain pairGENE3DG3DSA:1.10.238.10coord: 18..44
score: 2.
IPR011992EF-hand domain pairunknownSSF47473EF-handcoord: 13..44
score: 2.1