CU173328 (transcribed_cluster) Cucumber (Chinese Long) v2

NameCU173328
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionPlant UBX domain containing protein 4
LocationChr1 : 28228218 .. 28228391 (+)
Sequence length187
The following sequences are available for this feature:

transcribed_cluster sequence

GGGGGGTGGCCAGGAACTATCAGCTGCAGCTGATGGGGTTTCCCCTCCCCAAGCTTCTTAGCGACGTGACTCAGACGATCGAGCAGGCTGGTCTTGCCAATTCTGTTGTCATCCAGAAGTTTTAGCAACTTGGGTTAAGTTTTCTTTAAGACCATAACTAAAGAGGAAGAAAGAAAAACATTACAAA
BLAST of CU173328 vs. Swiss-Prot
Match: PUX4_ARATH (Plant UBX domain-containing protein 4 OS=Arabidopsis thaliana GN=PUX4 PE=1 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 9.9e-09
Identity = 30/40 (75.00%), Postives = 33/40 (82.50%), Query Frame = 3

Query: 3   GVARNYQLQLMGFPLPKLLSDVTQTIEQAGLANSVVIQKF 62
           G + NYQLQ MGFP PK L+D+TQTIE+AGLANSVV+QKF
Sbjct: 265 GASLNYQLQTMGFP-PKPLTDLTQTIEEAGLANSVVLQKF 303

Query: 63  122
           
Sbjct: 325 303

BLAST of CU173328 vs. Swiss-Prot
Match: PUX3_ARATH (Plant UBX domain-containing protein 3 OS=Arabidopsis thaliana GN=PUX3 PE=1 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 4.2e-07
Identity = 29/40 (72.50%), Postives = 31/40 (77.50%), Query Frame = 3

Query: 3   GVARNYQLQLMGFPLPKLLSDVTQTIEQAGLANSVVIQKF 62
           G   NY LQ+MGFP PK L+D +QTIEQAGLA+SVVIQKF
Sbjct: 264 GNPNNYTLQVMGFP-PKPLTDPSQTIEQAGLASSVVIQKF 302

Query: 63  122
           
Sbjct: 324 302

BLAST of CU173328 vs. Swiss-Prot
Match: PUX5_ARATH (Plant UBX domain-containing protein 5 OS=Arabidopsis thaliana GN=PUX5 PE=1 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 2.7e-06
Identity = 26/40 (65.00%), Postives = 31/40 (77.50%), Query Frame = 3

Query: 3   GVARNYQLQLMGFPLPKLLSDVTQTIEQAGLANSVVIQKF 62
           G ++ YQL  MGFP PK L+++ QTIEQAG+AN+VVIQKF
Sbjct: 383 GGSKEYQLLTMGFP-PKQLTELDQTIEQAGIANAVVIQKF 421

Query: 63  122
           
Sbjct: 443 421

BLAST of CU173328 vs. TrEMBL
Match: A0A0A0M3Q0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G701220 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 3.7e-10
Identity = 38/40 (95.00%), Postives = 38/40 (95.00%), Query Frame = 3

Query: 3   GVARNYQLQLMGFPLPKLLSDVTQTIEQAGLANSVVIQKF 62
           G ARNYQLQLMGFP PKLLSDVTQTIEQAGLANSVVIQKF
Sbjct: 264 GGARNYQLQLMGFP-PKLLSDVTQTIEQAGLANSVVIQKF 302

Query: 63  122
           
Sbjct: 324 302

BLAST of CU173328 vs. TrEMBL
Match: I3SVF6_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 6.9e-09
Identity = 35/38 (92.11%), Postives = 36/38 (94.74%), Query Frame = 3

Query: 9   ARNYQLQLMGFPLPKLLSDVTQTIEQAGLANSVVIQKF 68
           ARNYQLQ+MGFP PKLLSD TQTIEQAGLANSVVIQKF
Sbjct: 270 ARNYQLQIMGFP-PKLLSDETQTIEQAGLANSVVIQKF 306

Query: 69  123
           
Sbjct: 330 306

BLAST of CU173328 vs. TrEMBL
Match: A0A067GSF5_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g022009mg PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 9.0e-09
Identity = 34/40 (85.00%), Postives = 37/40 (92.50%), Query Frame = 3

Query: 3   GVARNYQLQLMGFPLPKLLSDVTQTIEQAGLANSVVIQKF 62
           G ARNYQLQ+MGFP PK+L+D TQTIEQAGLANSVVIQKF
Sbjct: 219 GTARNYQLQMMGFP-PKVLADRTQTIEQAGLANSVVIQKF 257

Query: 63  122
           
Sbjct: 279 257

BLAST of CU173328 vs. TrEMBL
Match: A0A067GSR0_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g022009mg PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 9.0e-09
Identity = 34/40 (85.00%), Postives = 37/40 (92.50%), Query Frame = 3

Query: 3   GVARNYQLQLMGFPLPKLLSDVTQTIEQAGLANSVVIQKF 62
           G ARNYQLQ+MGFP PK+L+D TQTIEQAGLANSVVIQKF
Sbjct: 266 GTARNYQLQMMGFP-PKVLADRTQTIEQAGLANSVVIQKF 304

Query: 63  122
           
Sbjct: 326 304

BLAST of CU173328 vs. TrEMBL
Match: V4UFS7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016067mg PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 9.0e-09
Identity = 34/40 (85.00%), Postives = 37/40 (92.50%), Query Frame = 3

Query: 3   GVARNYQLQLMGFPLPKLLSDVTQTIEQAGLANSVVIQKF 62
           G ARNYQLQ+MGFP PK+L+D TQTIEQAGLANSVVIQKF
Sbjct: 266 GTARNYQLQMMGFP-PKVLADRTQTIEQAGLANSVVIQKF 304

Query: 63  122
           
Sbjct: 326 304

BLAST of CU173328 vs. NCBI nr
Match: gi|449455377|ref|XP_004145429.1| (PREDICTED: UBA and UBX domain-containing protein At4g15410-like [Cucumis sativus])

HSP 1 Score: 73.9 bits (180), Expect = 1.1e-10
Identity = 38/40 (95.00%), Postives = 38/40 (95.00%), Query Frame = 3

Query: 3   GVARNYQLQLMGFPLPKLLSDVTQTIEQAGLANSVVIQKF 62
           G ARNYQLQLMGFP PKLLSDVTQTIEQAGLANSVVIQKF
Sbjct: 264 GGARNYQLQLMGFP-PKLLSDVTQTIEQAGLANSVVIQKF 302

Query: 63  122
           
Sbjct: 324 302

BLAST of CU173328 vs. NCBI nr
Match: gi|659118191|ref|XP_008458991.1| (PREDICTED: UBA and UBX domain-containing protein At4g15410-like [Cucumis melo])

HSP 1 Score: 73.9 bits (180), Expect = 1.1e-10
Identity = 38/40 (95.00%), Postives = 38/40 (95.00%), Query Frame = 3

Query: 3   GVARNYQLQLMGFPLPKLLSDVTQTIEQAGLANSVVIQKF 62
           G ARNYQLQLMGFP PKLLSDVTQTIEQAGLANSVVIQKF
Sbjct: 264 GGARNYQLQLMGFP-PKLLSDVTQTIEQAGLANSVVIQKF 302

Query: 63  122
           
Sbjct: 324 302

BLAST of CU173328 vs. NCBI nr
Match: gi|388512373|gb|AFK44248.1| (unknown [Lotus japonicus])

HSP 1 Score: 69.7 bits (169), Expect = 2.0e-09
Identity = 35/38 (92.11%), Postives = 36/38 (94.74%), Query Frame = 3

Query: 9   ARNYQLQLMGFPLPKLLSDVTQTIEQAGLANSVVIQKF 68
           ARNYQLQ+MGFP PKLLSD TQTIEQAGLANSVVIQKF
Sbjct: 270 ARNYQLQIMGFP-PKLLSDETQTIEQAGLANSVVIQKF 306

Query: 69  123
           
Sbjct: 330 306

BLAST of CU173328 vs. NCBI nr
Match: gi|641859682|gb|KDO78372.1| (hypothetical protein CISIN_1g022009mg [Citrus sinensis])

HSP 1 Score: 69.3 bits (168), Expect = 2.6e-09
Identity = 34/40 (85.00%), Postives = 37/40 (92.50%), Query Frame = 3

Query: 3   GVARNYQLQLMGFPLPKLLSDVTQTIEQAGLANSVVIQKF 62
           G ARNYQLQ+MGFP PK+L+D TQTIEQAGLANSVVIQKF
Sbjct: 219 GTARNYQLQMMGFP-PKVLADRTQTIEQAGLANSVVIQKF 257

Query: 63  122
           
Sbjct: 279 257

BLAST of CU173328 vs. NCBI nr
Match: gi|568826018|ref|XP_006467372.1| (PREDICTED: plant UBX domain-containing protein 4 [Citrus sinensis])

HSP 1 Score: 69.3 bits (168), Expect = 2.6e-09
Identity = 34/40 (85.00%), Postives = 37/40 (92.50%), Query Frame = 3

Query: 3   GVARNYQLQLMGFPLPKLLSDVTQTIEQAGLANSVVIQKF 62
           G ARNYQLQ+MGFP PK+L+D TQTIEQAGLANSVVIQKF
Sbjct: 266 GTARNYQLQMMGFP-PKVLADRTQTIEQAGLANSVVIQKF 304

Query: 63  122
           
Sbjct: 326 304

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
PUX4_ARATH9.9e-0975.00Plant UBX domain-containing protein 4 OS=Arabidopsis thaliana GN=PUX4 PE=1 SV=1[more]
PUX3_ARATH4.2e-0772.50Plant UBX domain-containing protein 3 OS=Arabidopsis thaliana GN=PUX3 PE=1 SV=1[more]
PUX5_ARATH2.7e-0665.00Plant UBX domain-containing protein 5 OS=Arabidopsis thaliana GN=PUX5 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0M3Q0_CUCSA3.7e-1095.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G701220 PE=4 SV=1[more]
I3SVF6_LOTJA6.9e-0992.11Uncharacterized protein OS=Lotus japonicus PE=2 SV=1[more]
A0A067GSF5_CITSI9.0e-0985.00Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g022009mg PE=4 SV=1[more]
A0A067GSR0_CITSI9.0e-0985.00Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g022009mg PE=4 SV=1[more]
V4UFS7_9ROSI9.0e-0985.00Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016067mg PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|449455377|ref|XP_004145429.1|1.1e-1095.00PREDICTED: UBA and UBX domain-containing protein At4g15410-like [Cucumis sativus... [more]
gi|659118191|ref|XP_008458991.1|1.1e-1095.00PREDICTED: UBA and UBX domain-containing protein At4g15410-like [Cucumis melo][more]
gi|388512373|gb|AFK44248.1|2.0e-0992.11unknown [Lotus japonicus][more]
gi|641859682|gb|KDO78372.1|2.6e-0985.00hypothetical protein CISIN_1g022009mg [Citrus sinensis][more]
gi|568826018|ref|XP_006467372.1|2.6e-0985.00PREDICTED: plant UBX domain-containing protein 4 [Citrus sinensis][more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa1G701220Csa1G701220gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
H0160566H0160566EST