CU173186 (transcribed_cluster) Cucumber (Chinese Long) v2

NameCU173186
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 10960046 .. 10960341 (+)
Sequence length163
The following sequences are available for this feature:

transcribed_cluster sequence

TGGAAAAAGAAGTAGAAGGATTTAGGGAAAGTACTCCGGTTTCTCTTCAGAACTAGAGGATTGGGTTCCTTCGGAATCTCTATCCCCAGTCGCTTCTTCCAATTGCTGGCGTTGCTTTTCTTCCTCACCTTCATCTACTCGTTGTCCTTCCTTCAACTGTTCC
BLAST of CU173186 vs. TrEMBL
Match: A0A0A0KB89_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G155540 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 2.6e-15
Identity = 43/44 (97.73%), Postives = 44/44 (100.00%), Query Frame = -2

Query: 31  EQLKEGQRVDEGEEEKQRQQLEEATGDRDSEGTQSSSSEEKPEY 90
           EQLKEGQRVDEGEEEKQRQQLEEATGDRDSEGTQSSSSEEKPE+
Sbjct: 52  EQLKEGQRVDEGEEEKQRQQLEEATGDRDSEGTQSSSSEEKPEF 95

Query: 91  150
           
Sbjct: 112 95

Query: 151 163
           
Sbjct: 172 95

BLAST of CU173186 vs. NCBI nr
Match: gi|778713644|ref|XP_011657078.1| (PREDICTED: putative E3 ubiquitin-protein ligase RING1a isoform X2 [Cucumis sativus])

HSP 1 Score: 77.0 bits (188), Expect = 1.1e-11
Identity = 43/44 (97.73%), Postives = 44/44 (100.00%), Query Frame = -2

Query: 31  EQLKEGQRVDEGEEEKQRQQLEEATGDRDSEGTQSSSSEEKPEY 90
           EQLKEGQRVDEGEEEKQRQQLEEATGDRDSEGTQSSSSEEKPE+
Sbjct: 52  EQLKEGQRVDEGEEEKQRQQLEEATGDRDSEGTQSSSSEEKPEF 95

Query: 91  150
           
Sbjct: 112 95

Query: 151 163
           
Sbjct: 172 95

BLAST of CU173186 vs. NCBI nr
Match: gi|449463098|ref|XP_004149271.1| (PREDICTED: putative E3 ubiquitin-protein ligase RING1a isoform X4 [Cucumis sativus])

HSP 1 Score: 77.0 bits (188), Expect = 1.1e-11
Identity = 43/44 (97.73%), Postives = 44/44 (100.00%), Query Frame = -2

Query: 31  EQLKEGQRVDEGEEEKQRQQLEEATGDRDSEGTQSSSSEEKPEY 90
           EQLKEGQRVDEGEEEKQRQQLEEATGDRDSEGTQSSSSEEKPE+
Sbjct: 52  EQLKEGQRVDEGEEEKQRQQLEEATGDRDSEGTQSSSSEEKPEF 95

Query: 91  150
           
Sbjct: 112 95

Query: 151 163
           
Sbjct: 172 95

BLAST of CU173186 vs. NCBI nr
Match: gi|778713642|ref|XP_011657077.1| (PREDICTED: putative E3 ubiquitin-protein ligase RING1a isoform X1 [Cucumis sativus])

HSP 1 Score: 77.0 bits (188), Expect = 1.1e-11
Identity = 43/44 (97.73%), Postives = 44/44 (100.00%), Query Frame = -2

Query: 31  EQLKEGQRVDEGEEEKQRQQLEEATGDRDSEGTQSSSSEEKPEY 90
           EQLKEGQRVDEGEEEKQRQQLEEATGDRDSEGTQSSSSEEKPE+
Sbjct: 52  EQLKEGQRVDEGEEEKQRQQLEEATGDRDSEGTQSSSSEEKPEF 95

Query: 91  150
           
Sbjct: 112 95

Query: 151 163
           
Sbjct: 172 95

BLAST of CU173186 vs. NCBI nr
Match: gi|778713646|ref|XP_011657079.1| (PREDICTED: putative E3 ubiquitin-protein ligase RING1a isoform X3 [Cucumis sativus])

HSP 1 Score: 77.0 bits (188), Expect = 1.1e-11
Identity = 43/44 (97.73%), Postives = 44/44 (100.00%), Query Frame = -2

Query: 31  EQLKEGQRVDEGEEEKQRQQLEEATGDRDSEGTQSSSSEEKPEY 90
           EQLKEGQRVDEGEEEKQRQQLEEATGDRDSEGTQSSSSEEKPE+
Sbjct: 52  EQLKEGQRVDEGEEEKQRQQLEEATGDRDSEGTQSSSSEEKPEF 95

Query: 91  150
           
Sbjct: 112 95

Query: 151 163
           
Sbjct: 172 95

BLAST of CU173186 vs. NCBI nr
Match: gi|778713653|ref|XP_011657082.1| (PREDICTED: putative E3 ubiquitin-protein ligase RING1a isoform X7 [Cucumis sativus])

HSP 1 Score: 75.5 bits (184), Expect = 3.2e-11
Identity = 43/43 (100.00%), Postives = 43/43 (100.00%), Query Frame = -2

Query: 34  EQLKEGQRVDEGEEEKQRQQLEEATGDRDSEGTQSSSSEEKPE 93
           EQLKEGQRVDEGEEEKQRQQLEEATGDRDSEGTQSSSSEEKPE
Sbjct: 52  EQLKEGQRVDEGEEEKQRQQLEEATGDRDSEGTQSSSSEEKPE 94

Query: 94  153
           
Sbjct: 112 94

Query: 154 163
           
Sbjct: 172 94

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0KB89_CUCSA2.6e-1597.73Uncharacterized protein OS=Cucumis sativus GN=Csa_6G155540 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|778713644|ref|XP_011657078.1|1.1e-1197.73PREDICTED: putative E3 ubiquitin-protein ligase RING1a isoform X2 [Cucumis sativ... [more]
gi|449463098|ref|XP_004149271.1|1.1e-1197.73PREDICTED: putative E3 ubiquitin-protein ligase RING1a isoform X4 [Cucumis sativ... [more]
gi|778713642|ref|XP_011657077.1|1.1e-1197.73PREDICTED: putative E3 ubiquitin-protein ligase RING1a isoform X1 [Cucumis sativ... [more]
gi|778713646|ref|XP_011657079.1|1.1e-1197.73PREDICTED: putative E3 ubiquitin-protein ligase RING1a isoform X3 [Cucumis sativ... [more]
gi|778713653|ref|XP_011657082.1|3.2e-11100.00PREDICTED: putative E3 ubiquitin-protein ligase RING1a isoform X7 [Cucumis sativ... [more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa6G155540Csa6G155540gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
H0159560H0159560EST