CU172802 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU172802
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr3 : 17372069 .. 17372278 (+)
Sequence length	209

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

AAGGAGCCCAAATGAAATCCAATTTCATCCCAGTTTCACCAATCAGAATTTGGTAATTACTATGCCGTTTGAACAGATCGCCTCTAACAGCTTCCATTCTTTGAGAATCCAACGTCAAATCCAGCAGTGACAGAGCCATCAATCTCGCCTGTGAGTCACCGGCGACAACAACCCATGACCCATTAAGCAAATCAGCAACATCCGTGGGA

Library


Library category	ESTs
hermaphrodite flower library	1

Homology

[Close]

BLAST of CU172802 vs. TrEMBL
Match: A0A0A0L9Z7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G307680 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 3.7e-19
Identity = 51/69 (73.91%), Postives = 51/69 (73.91%), Query Frame = -2


Query: 2   PTDVADLLNGSWVVVAGDSXXXXXXXXXXXXXXXXXXMEAVRGDLFKRHSNYQILIGETG 61
           PTDVADLLNGSWVVVAGDS                  MEAVRGDLFKRHSNYQILIGETG
Sbjct: 124 PTDVADLLNGSWVVVAGDSQARLMALSLLDLTLDSQRMEAVRGDLFKRHSNYQILIGETG 183

Query: 62  MKLDFIWAP 121
           MKLDFIWAP
Sbjct: 184 MKLDFIWAP 192

Query: 122  181
           
Sbjct: 244  192

Query: 182  209
           
Sbjct: 304  192

[Close]

BLAST of CU172802 vs. TrEMBL
Match: K4B9Z3_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 3.1e-13
Identity = 40/68 (58.82%), Postives = 44/68 (64.71%), Query Frame = -2


Query: 2   TDVADLLNGSWVVVAGDSXXXXXXXXXXXXXXXXXXMEAVRGDLFKRHSNYQILIGETGM 61
           +D +DL NGSWVVVAGDS                  ME +RGDLFKRHS+Y ILI E GM
Sbjct: 132 SDASDLFNGSWVVVAGDSQARLFVVSLLELLLGESEMEMIRGDLFKRHSDYNILIDEIGM 191

Query: 62  KLDFIWAP 121
           KLDFIWAP
Sbjct: 192 KLDFIWAP 199

Query: 122  181
           
Sbjct: 252  199

Query: 182  206
           
Sbjct: 312  199

[Close]

BLAST of CU172802 vs. TrEMBL
Match: V4SSH8_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012019mg PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 8.9e-13
Identity = 38/68 (55.88%), Postives = 46/68 (67.65%), Query Frame = -2


Query: 2   TDVADLLNGSWVVVAGDSXXXXXXXXXXXXXXXXXXMEAVRGDLFKRHSNYQILIGETGM 61
           +D +DLLNGSWVVVAGDS                  ++++RGDLFKRHS+Y I+I E GM
Sbjct: 127 SDASDLLNGSWVVVAGDSQARLLVVSLLSLVLDQERVDSIRGDLFKRHSDYDIVIDEIGM 186

Query: 62  KLDFIWAP 121
           KLDFIWAP
Sbjct: 187 KLDFIWAP 194

Query: 122  181
           
Sbjct: 247  194

Query: 182  206
           
Sbjct: 307  194

[Close]

BLAST of CU172802 vs. TrEMBL
Match: A0A067ETW3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g017787mg PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 8.9e-13
Identity = 38/68 (55.88%), Postives = 46/68 (67.65%), Query Frame = -2


Query: 2   TDVADLLNGSWVVVAGDSXXXXXXXXXXXXXXXXXXMEAVRGDLFKRHSNYQILIGETGM 61
           +D +DLLNGSWVVVAGDS                  ++++RGDLFKRHS+Y I+I E GM
Sbjct: 127 SDASDLLNGSWVVVAGDSQARLLVVSLLSLVLDQERVDSIRGDLFKRHSDYDIVIDEIGM 186

Query: 62  KLDFIWAP 121
           KLDFIWAP
Sbjct: 187 KLDFIWAP 194

Query: 122  181
           
Sbjct: 247  194

Query: 182  206
           
Sbjct: 307  194

[Close]

BLAST of CU172802 vs. TrEMBL
Match: A0A022QU97_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a008751mg PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.2e-12
Identity = 39/68 (57.35%), Postives = 43/68 (63.24%), Query Frame = -2


Query: 2   TDVADLLNGSWVVVAGDSXXXXXXXXXXXXXXXXXXMEAVRGDLFKRHSNYQILIGETGM 61
           +D +DLLNGSWVVVAGDS                  ME VRGDLFKRHS+Y I + E GM
Sbjct: 126 SDASDLLNGSWVVVAGDSQARLMAVSLLELVMGNEAMERVRGDLFKRHSDYSITVDEIGM 185

Query: 62  KLDFIWAP 121
           KLDF WAP
Sbjct: 186 KLDFFWAP 193

Query: 122  181
           
Sbjct: 246  193

Query: 182  206
           
Sbjct: 306  193

[Close]

BLAST of CU172802 vs. NCBI nr
Match: gi|449456210|ref|XP_004145843.1| (PREDICTED: uncharacterized protein LOC101220526 [Cucumis sativus])

HSP 1 Score: 104.4 bits (259), Expect = 8.3e-20
Identity = 51/69 (73.91%), Postives = 51/69 (73.91%), Query Frame = -2


Query: 2   PTDVADLLNGSWVVVAGDSXXXXXXXXXXXXXXXXXXMEAVRGDLFKRHSNYQILIGETG 61
           PTDVADLLNGSWVVVAGDS                  MEAVRGDLFKRHSNYQILIGETG
Sbjct: 124 PTDVADLLNGSWVVVAGDSQARLMALSLLDLTLDSQRMEAVRGDLFKRHSNYQILIGETG 183

Query: 62  MKLDFIWAP 121
           MKLDFIWAP
Sbjct: 184 MKLDFIWAP 192

Query: 122  181
           
Sbjct: 244  192

Query: 182  209
           
Sbjct: 304  192

[Close]

BLAST of CU172802 vs. NCBI nr
Match: gi|659114395|ref|XP_008457033.1| (PREDICTED: uncharacterized protein LOC103496810 [Cucumis melo])

HSP 1 Score: 101.7 bits (252), Expect = 5.4e-19
Identity = 49/69 (71.01%), Postives = 50/69 (72.46%), Query Frame = -2


Query: 2   PTDVADLLNGSWVVVAGDSXXXXXXXXXXXXXXXXXXMEAVRGDLFKRHSNYQILIGETG 61
           PTDVADLLNGSWVV+AGDS                  MEAVRGDLFKRHSNYQILI ETG
Sbjct: 124 PTDVADLLNGSWVVIAGDSQARLMALSLLDLTLDSQRMEAVRGDLFKRHSNYQILISETG 183

Query: 62  MKLDFIWAP 121
           MKLDFIWAP
Sbjct: 184 MKLDFIWAP 192

Query: 122  181
           
Sbjct: 244  192

Query: 182  209
           
Sbjct: 304  192

[Close]

BLAST of CU172802 vs. NCBI nr
Match: gi|297738148|emb|CBI27349.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 85.5 bits (210), Expect = 4.0e-14
Identity = 39/68 (57.35%), Postives = 47/68 (69.12%), Query Frame = -2


Query: 2   TDVADLLNGSWVVVAGDSXXXXXXXXXXXXXXXXXXMEAVRGDLFKRHSNYQILIGETGM 61
           +D +DLLNGSWVVVAGDS                  ME V+GDLFKRHS+Y+I++G+ GM
Sbjct: 111 SDASDLLNGSWVVVAGDSQERLMALSLLSLVLDSDDMEVVKGDLFKRHSDYRIVMGQIGM 170

Query: 62  KLDFIWAP 121
           KLDFIWAP
Sbjct: 171 KLDFIWAP 178

Query: 122  181
           
Sbjct: 231  178

Query: 182  206
           
Sbjct: 291  178

[Close]

BLAST of CU172802 vs. NCBI nr
Match: gi|225466247|ref|XP_002270106.1| (PREDICTED: uncharacterized protein LOC100244457 [Vitis vinifera])

HSP 1 Score: 85.5 bits (210), Expect = 4.0e-14
Identity = 39/68 (57.35%), Postives = 47/68 (69.12%), Query Frame = -2


Query: 2   TDVADLLNGSWVVVAGDSXXXXXXXXXXXXXXXXXXMEAVRGDLFKRHSNYQILIGETGM 61
           +D +DLLNGSWVVVAGDS                  ME V+GDLFKRHS+Y+I++G+ GM
Sbjct: 116 SDASDLLNGSWVVVAGDSQERLMALSLLSLVLDSDDMEVVKGDLFKRHSDYRIVMGQIGM 175

Query: 62  KLDFIWAP 121
           KLDFIWAP
Sbjct: 176 KLDFIWAP 183

Query: 122  181
           
Sbjct: 236  183

Query: 182  206
           
Sbjct: 296  183

[Close]

BLAST of CU172802 vs. NCBI nr
Match: gi|1009126374|ref|XP_015880119.1| (PREDICTED: uncharacterized protein LOC107416175 [Ziziphus jujuba])

HSP 1 Score: 85.1 bits (209), Expect = 5.2e-14
Identity = 39/68 (57.35%), Postives = 48/68 (70.59%), Query Frame = -2


Query: 2   TDVADLLNGSWVVVAGDSXXXXXXXXXXXXXXXXXXMEAVRGDLFKRHSNYQILIGETGM 61
           +DV+DLLNGSWVVVAGDS                  +E+V+ DLFKRHS+YQI++GE GM
Sbjct: 125 SDVSDLLNGSWVVVAGDSQARFVALSLLNLILDSDGIESVKRDLFKRHSDYQIVVGEIGM 184

Query: 62  KLDFIWAP 121
           +LDFIWAP
Sbjct: 185 RLDFIWAP 192

Query: 122  181
           
Sbjct: 245  192

Query: 182  206
           
Sbjct: 305  192

The following BLAST results are available for this feature:

BLAST of CU172802 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L9Z7_CUCSA	3.7e-19	73.91	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G307680 PE=4 SV=1	[more]
K4B9Z3_SOLLC	3.1e-13	58.82	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]
V4SSH8_9ROSI	8.9e-13	55.88	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012019mg PE=4 SV=1	[more]
A0A067ETW3_CITSI	8.9e-13	55.88	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g017787mg PE=4 SV=1	[more]
A0A022QU97_ERYGU	1.2e-12	57.35	Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a008751mg PE=4 SV=1	[more]

BLAST of CU172802 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449456210\|ref\|XP_004145843.1\|	8.3e-20	73.91	PREDICTED: uncharacterized protein LOC101220526 [Cucumis sativus]	[more]
gi\|659114395\|ref\|XP_008457033.1\|	5.4e-19	71.01	PREDICTED: uncharacterized protein LOC103496810 [Cucumis melo]	[more]
gi\|297738148\|emb\|CBI27349.3\|	4.0e-14	57.35	unnamed protein product [Vitis vinifera]	[more]
gi\|225466247\|ref\|XP_002270106.1\|	4.0e-14	57.35	PREDICTED: uncharacterized protein LOC100244457 [Vitis vinifera]	[more]
gi\|1009126374\|ref\|XP_015880119.1\|	5.2e-14	57.35	PREDICTED: uncharacterized protein LOC107416175 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa3G307680	Csa3G307680	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
H0156676	H0156676	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR13533	FAMILY NOT NAMED	coord: 4..70 score: 6.6