CU172035 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU172035
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr6 : 11550431 .. 11550628 (-)
Sequence length	205

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

CAATGACCCTCTGGAATGTTTGTATTAAGTCCTCTTCTCCATCCACTTGAAGTTCAAGGAAGCACCTATCCATCTTGTTAACAGTCAAGACAGGTCTAATCCTCTCTCCCAAAGCCTGACGGAGCACAGTCTCTGTTTGGACACAAAACACCTTCGATGCAATCCAACCACAACAAAGAGACAACCATCAGTAATACGCAAAGCA

Library


Library category	ESTs
hermaphrodite flower library	1

Homology

[Close]

BLAST of CU172035 vs. Swiss-Prot
Match: EF2_ARATH (Elongation factor 2 OS=Arabidopsis thaliana GN=LOS1 PE=1 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 3.2e-16
Identity = 44/48 (91.67%), Postives = 42/48 (87.50%), Query Frame = -1


Query: 2   CVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEDLIQTFQRVI 61
           CVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEE   QTF RVI
Sbjct: 136 CVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEE-AYQTFSRVI 182

Query: 62   121
           
Sbjct: 196  182

Query: 122  146
           
Sbjct: 256  182

[Close]

BLAST of CU172035 vs. Swiss-Prot
Match: EF2_BETVU (Elongation factor 2 OS=Beta vulgaris PE=2 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 9.3e-16
Identity = 43/48 (89.58%), Postives = 42/48 (87.50%), Query Frame = -1


Query: 2   CVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEDLIQTFQRVI 61
           CVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEE    TFQ+VI
Sbjct: 136 CVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEE-AYTTFQKVI 182

Query: 62   121
           
Sbjct: 196  182

Query: 122  146
           
Sbjct: 256  182

[Close]

BLAST of CU172035 vs. Swiss-Prot
Match: EF2_PARKE (Elongation factor 2 OS=Parachlorella kessleri PE=2 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.6e-12
Identity = 36/48 (75.00%), Postives = 40/48 (83.33%), Query Frame = -1


Query: 2   CVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEDLIQTFQRVI 61
           CVQTETVLRQALGERIRPVLT+NK+DRCFLEL +D EE  +  ++RVI
Sbjct: 136 CVQTETVLRQALGERIRPVLTINKIDRCFLELMLDPEEAYL-AYRRVI 182

Query: 62   121
           
Sbjct: 196  182

Query: 122  146
           
Sbjct: 256  182

[Close]

BLAST of CU172035 vs. Swiss-Prot
Match: EF2_PICGU (Elongation factor 2 OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=EFT2 PE=3 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 8.2e-12
Identity = 36/48 (75.00%), Postives = 38/48 (79.17%), Query Frame = -1


Query: 2   CVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEDLIQTFQRVI 61
           CVQTETVLRQALGERI+PVL VNK+DR  LELQV  +EDL QTF R +
Sbjct: 136 CVQTETVLRQALGERIKPVLVVNKVDRALLELQV-SKEDLYQTFARTV 182

Query: 62   121
           
Sbjct: 196  182

Query: 122  146
           
Sbjct: 256  182

[Close]

BLAST of CU172035 vs. Swiss-Prot
Match: EF2_DROME (Elongation factor 2 OS=Drosophila melanogaster GN=EF2 PE=1 SV=4)

HSP 1 Score: 70.5 bits (171), Expect = 8.2e-12
Identity = 34/48 (70.83%), Postives = 39/48 (81.25%), Query Frame = -1


Query: 2   CVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEDLIQTFQRVI 61
           CVQTETVLRQA+ ERI+P+L +NKMDR  LELQ+D EE L QTFQR++
Sbjct: 140 CVQTETVLRQAIAERIKPILFMNKMDRALLELQLDAEE-LYQTFQRIV 186

Query: 62   121
           
Sbjct: 200  186

Query: 122  146
           
Sbjct: 260  186

[Close]

BLAST of CU172035 vs. TrEMBL
Match: A0A0S3SK93_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.07G219100 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 9.4e-15
Identity = 45/48 (93.75%), Postives = 45/48 (93.75%), Query Frame = -1


Query: 2   CVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEDLIQTFQRVI 61
           CVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEE   QTFQRVI
Sbjct: 142 CVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEE-AYQTFQRVI 188

Query: 62   121
           
Sbjct: 202  188

Query: 122  146
           
Sbjct: 262  188

[Close]

BLAST of CU172035 vs. TrEMBL
Match: M4DVJ8_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 9.4e-15
Identity = 45/48 (93.75%), Postives = 45/48 (93.75%), Query Frame = -1


Query: 2   CVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEDLIQTFQRVI 61
           CVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEE   QTFQRVI
Sbjct: 238 CVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEE-AYQTFQRVI 284

Query: 62   121
           
Sbjct: 298  284

Query: 122  146
           
Sbjct: 358  284

[Close]

BLAST of CU172035 vs. TrEMBL
Match: A9U245_PHYPA (Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_109208 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 9.4e-15
Identity = 45/48 (93.75%), Postives = 45/48 (93.75%), Query Frame = -1


Query: 2   CVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEDLIQTFQRVI 61
           CVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEE   QTFQRVI
Sbjct: 136 CVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEE-AYQTFQRVI 182

Query: 62   121
           
Sbjct: 196  182

Query: 122  146
           
Sbjct: 256  182

[Close]

BLAST of CU172035 vs. TrEMBL
Match: A0A0B2R4R9_GLYSO (Elongation factor 2 OS=Glycine soja GN=glysoja_011424 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 9.4e-15
Identity = 45/48 (93.75%), Postives = 45/48 (93.75%), Query Frame = -1


Query: 2   CVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEDLIQTFQRVI 61
           CVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEE   QTFQRVI
Sbjct: 136 CVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEE-AYQTFQRVI 182

Query: 62   121
           
Sbjct: 196  182

Query: 122  146
           
Sbjct: 256  182

[Close]

BLAST of CU172035 vs. TrEMBL
Match: A0A151R3J4_CAJCA (Elongation factor 2 OS=Cajanus cajan GN=KK1_041698 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 9.4e-15
Identity = 45/48 (93.75%), Postives = 45/48 (93.75%), Query Frame = -1


Query: 2   CVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEDLIQTFQRVI 61
           CVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEE   QTFQRVI
Sbjct: 124 CVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEE-AYQTFQRVI 170

Query: 62   121
           
Sbjct: 184  170

Query: 122  146
           
Sbjct: 244  170

[Close]

BLAST of CU172035 vs. NCBI nr
Match: gi|976916864|gb|KVI02359.1| (Elongation factor G, III-V domain-containing protein [Cynara cardunculus var. scolymus])

HSP 1 Score: 87.4 bits (215), Expect = 1.0e-14
Identity = 45/48 (93.75%), Postives = 45/48 (93.75%), Query Frame = -1


Query: 2   CVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEDLIQTFQRVI 61
           CVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEE   QTFQRVI
Sbjct: 136 CVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEE-AYQTFQRVI 182

Query: 62   121
           
Sbjct: 196  182

Query: 122  146
           
Sbjct: 256  182

[Close]

BLAST of CU172035 vs. NCBI nr
Match: gi|702366581|ref|XP_010060846.1| (PREDICTED: elongation factor 2 [Eucalyptus grandis])

HSP 1 Score: 87.4 bits (215), Expect = 1.0e-14
Identity = 45/48 (93.75%), Postives = 45/48 (93.75%), Query Frame = -1


Query: 2   CVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEDLIQTFQRVI 61
           CVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEE   QTFQRVI
Sbjct: 136 CVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEE-AYQTFQRVI 182

Query: 62   121
           
Sbjct: 196  182

Query: 122  146
           
Sbjct: 256  182

[Close]

BLAST of CU172035 vs. NCBI nr
Match: gi|778713730|ref|XP_011657107.1| (PREDICTED: elongation factor 2 [Cucumis sativus])

HSP 1 Score: 87.4 bits (215), Expect = 1.0e-14
Identity = 45/48 (93.75%), Postives = 45/48 (93.75%), Query Frame = -1


Query: 2   CVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEDLIQTFQRVI 61
           CVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEE   QTFQRVI
Sbjct: 136 CVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEE-AYQTFQRVI 182

Query: 62   121
           
Sbjct: 196  182

Query: 122  146
           
Sbjct: 256  182

[Close]

BLAST of CU172035 vs. NCBI nr
Match: gi|168065996|ref|XP_001784930.1| (predicted protein [Physcomitrella patens])

HSP 1 Score: 87.4 bits (215), Expect = 1.0e-14
Identity = 45/48 (93.75%), Postives = 45/48 (93.75%), Query Frame = -1


Query: 2   CVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEDLIQTFQRVI 61
           CVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEE   QTFQRVI
Sbjct: 136 CVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEE-AYQTFQRVI 182

Query: 62   121
           
Sbjct: 196  182

Query: 122  146
           
Sbjct: 256  182

[Close]

BLAST of CU172035 vs. NCBI nr
Match: gi|674943192|emb|CDX90241.1| (BnaA08g17430D [Brassica napus])

HSP 1 Score: 87.4 bits (215), Expect = 1.0e-14
Identity = 45/48 (93.75%), Postives = 45/48 (93.75%), Query Frame = -1


Query: 2   CVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEDLIQTFQRVI 61
           CVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEE   QTFQRVI
Sbjct: 115 CVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEE-AYQTFQRVI 161

Query: 62   121
           
Sbjct: 175  161

Query: 122  146
           
Sbjct: 235  161

The following BLAST results are available for this feature:

BLAST of CU172035 vs. Swiss-Prot


Match Name	E-value	Identity	Description
EF2_ARATH	3.2e-16	91.67	Elongation factor 2 OS=Arabidopsis thaliana GN=LOS1 PE=1 SV=1	[more]
EF2_BETVU	9.3e-16	89.58	Elongation factor 2 OS=Beta vulgaris PE=2 SV=1	[more]
EF2_PARKE	1.6e-12	75.00	Elongation factor 2 OS=Parachlorella kessleri PE=2 SV=1	[more]
EF2_PICGU	8.2e-12	75.00	Elongation factor 2 OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / D...	[more]
EF2_DROME	8.2e-12	70.83	Elongation factor 2 OS=Drosophila melanogaster GN=EF2 PE=1 SV=4	[more]

BLAST of CU172035 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0S3SK93_PHAAN	9.4e-15	93.75	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.07G219100 PE=...	[more]
M4DVJ8_BRARP	9.4e-15	93.75	Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1	[more]
A9U245_PHYPA	9.4e-15	93.75	Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_109208 PE...	[more]
A0A0B2R4R9_GLYSO	9.4e-15	93.75	Elongation factor 2 OS=Glycine soja GN=glysoja_011424 PE=4 SV=1	[more]
A0A151R3J4_CAJCA	9.4e-15	93.75	Elongation factor 2 OS=Cajanus cajan GN=KK1_041698 PE=4 SV=1	[more]

BLAST of CU172035 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|976916864\|gb\|KVI02359.1\|	1.0e-14	93.75	Elongation factor G, III-V domain-containing protein [Cynara cardunculus var. sc...	[more]
gi\|702366581\|ref\|XP_010060846.1\|	1.0e-14	93.75	PREDICTED: elongation factor 2 [Eucalyptus grandis]	[more]
gi\|778713730\|ref\|XP_011657107.1\|	1.0e-14	93.75	PREDICTED: elongation factor 2 [Cucumis sativus]	[more]
gi\|168065996\|ref\|XP_001784930.1\|	1.0e-14	93.75	predicted protein [Physcomitrella patens]	[more]
gi\|674943192\|emb\|CDX90241.1\|	1.0e-14	93.75	BnaA08g17430D [Brassica napus]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR027417	P-loop_NTPase

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa6G176410	Csa6G176410	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
H0150771	H0150771	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	G3DSA:3.40.50.300		coord: 2..68 score: 4.1
IPR027417	P-loop containing nucleoside triphosphate hydrolase	unknown	SSF52540	P-loop containing nucleoside triphosphate hydrolases	coord: 2..70 score: 9.61
None	No IPR available	PANTHER	PTHR23115	TRANSLATION FACTOR	coord: 2..69 score: 6.1
None	No IPR available	PANTHER	PTHR23115:SF136	SUBFAMILY NOT NAMED	coord: 2..69 score: 6.1
None	No IPR available	PFAM	PF00009	GTP_EFTU	coord: 2..59 score: 4.7