CU171978 (transcribed_cluster) Cucumber (Chinese Long) v2

Overview
NameCU171978
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr5 : 15508405 .. 15508529 (-)
Sequence length125
Genome Viewer
Sequences
The following sequences are available for this feature:

transcribed_cluster sequence

ATTGATTCCATTTTTTGATGTCAACACAAGATCATAAAGCTGGGTTCATGATTGTCCCACTAATTGAAACATCCCAAGTTGCATCTTCTTGGCTGACCTTATTACAATTTTGAATCACAGCTAAA
Homology
[Close]
BLAST of CU171978 vs. TrEMBL
Match: A0A0A0KN71_CUCSA (rRNA N-glycosidase OS=Cucumis sativus GN=Csa_5G428440 PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.5e-07
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = -2 

Query: 38  LAVIQNCNKVSQEDATWDVSISGTIMNPA 97
           LAVIQNCNKVSQEDATWDVSISGTIMNPA
Sbjct: 344 LAVIQNCNKVSQEDATWDVSISGTIMNPA 372

Query: 98   125
           
Sbjct: 404  372

[Close]
BLAST of CU171978 vs. NCBI nr
Match: gi|449445192|ref|XP_004140357.1| (PREDICTED: nigrin b [Cucumis sativus])

HSP 1 Score: 63.9 bits (154), Expect = 7.4e-08
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = -2 

Query: 38  LAVIQNCNKVSQEDATWDVSISGTIMNPA 97
           LAVIQNCNKVSQEDATWDVSISGTIMNPA
Sbjct: 344 LAVIQNCNKVSQEDATWDVSISGTIMNPA 372

Query: 98   125
           
Sbjct: 404  372

The following BLAST results are available for this feature:
BLAST of CU171978 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KN71_CUCSA1.5e-07100.00rRNA N-glycosidase OS=Cucumis sativus GN=Csa_5G428440 PE=3 SV=1[more]
BLAST of CU171978 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449445192|ref|XP_004140357.1|7.4e-08100.00PREDICTED: nigrin b [Cucumis sativus][more]
Relationships

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa5G428440Csa5G428440gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
H0150284H0150284EST