CU171647 (transcribed_cluster) Cucumber (Chinese Long) v2

Overview
NameCU171647
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr4 : 6521599 .. 6521721 (+)
Sequence length125
Genome Viewer
Sequences
The following sequences are available for this feature:

transcribed_cluster sequence

CTCTTTCTGTCTCGTCATACAATCCAATGAGAGAACCTTTTCATAGAACATTTGGAAGTTCACTGTCATTGCAGTCACCTGCTGGAAGATCTTCAATAAAGATTGCTCCTTTTATGAGGGAGAGC
Homology
[Close]
BLAST of CU171647 vs. TrEMBL
Match: A0A0A0L0L6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G099740 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.4e-10
Identity = 35/37 (94.59%), Postives = 36/37 (97.30%), Query Frame = 3 

Query: 6   SVSSYNPMREPFHRTFGSSLSLQSPAGRSSIKIAPFM 65
           SVSSYNPMREPFHRTFGSSLSLQS AGRSSIKIAPF+
Sbjct: 129 SVSSYNPMREPFHRTFGSSLSLQSSAGRSSIKIAPFI 165

Query: 66   117
           
Sbjct: 189  165

[Close]
BLAST of CU171647 vs. NCBI nr
Match: gi|778691846|ref|XP_011653362.1| (PREDICTED: uncharacterized protein LOC101218523 isoform X1 [Cucumis sativus])

HSP 1 Score: 72.0 bits (175), Expect = 2.7e-10
Identity = 35/37 (94.59%), Postives = 36/37 (97.30%), Query Frame = 3 

Query: 6   SVSSYNPMREPFHRTFGSSLSLQSPAGRSSIKIAPFM 65
           SVSSYNPMREPFHRTFGSSLSLQS AGRSSIKIAPF+
Sbjct: 240 SVSSYNPMREPFHRTFGSSLSLQSSAGRSSIKIAPFI 276

Query: 66   117
           
Sbjct: 300  276

[Close]
BLAST of CU171647 vs. NCBI nr
Match: gi|700198513|gb|KGN53671.1| (hypothetical protein Csa_4G099740 [Cucumis sativus])

HSP 1 Score: 72.0 bits (175), Expect = 2.7e-10
Identity = 35/37 (94.59%), Postives = 36/37 (97.30%), Query Frame = 3 

Query: 6   SVSSYNPMREPFHRTFGSSLSLQSPAGRSSIKIAPFM 65
           SVSSYNPMREPFHRTFGSSLSLQS AGRSSIKIAPF+
Sbjct: 129 SVSSYNPMREPFHRTFGSSLSLQSSAGRSSIKIAPFI 165

Query: 66   117
           
Sbjct: 189  165

[Close]
BLAST of CU171647 vs. NCBI nr
Match: gi|659111150|ref|XP_008455604.1| (PREDICTED: uncharacterized protein LOC103495739 isoform X1 [Cucumis melo])

HSP 1 Score: 72.0 bits (175), Expect = 2.7e-10
Identity = 35/37 (94.59%), Postives = 36/37 (97.30%), Query Frame = 3 

Query: 6   SVSSYNPMREPFHRTFGSSLSLQSPAGRSSIKIAPFM 65
           SVSSYNPMREPFHRTFGSSLSLQS AGRSSIKIAPF+
Sbjct: 239 SVSSYNPMREPFHRTFGSSLSLQSSAGRSSIKIAPFI 275

Query: 66   117
           
Sbjct: 299  275

[Close]
BLAST of CU171647 vs. NCBI nr
Match: gi|778691849|ref|XP_011653363.1| (PREDICTED: uncharacterized protein LOC101218523 isoform X2 [Cucumis sativus])

HSP 1 Score: 72.0 bits (175), Expect = 2.7e-10
Identity = 35/37 (94.59%), Postives = 36/37 (97.30%), Query Frame = 3 

Query: 6   SVSSYNPMREPFHRTFGSSLSLQSPAGRSSIKIAPFM 65
           SVSSYNPMREPFHRTFGSSLSLQS AGRSSIKIAPF+
Sbjct: 179 SVSSYNPMREPFHRTFGSSLSLQSSAGRSSIKIAPFI 215

Query: 66   117
           
Sbjct: 239  215

[Close]
BLAST of CU171647 vs. NCBI nr
Match: gi|659111152|ref|XP_008455605.1| (PREDICTED: uncharacterized protein LOC103495739 isoform X2 [Cucumis melo])

HSP 1 Score: 72.0 bits (175), Expect = 2.7e-10
Identity = 35/37 (94.59%), Postives = 36/37 (97.30%), Query Frame = 3 

Query: 6   SVSSYNPMREPFHRTFGSSLSLQSPAGRSSIKIAPFM 65
           SVSSYNPMREPFHRTFGSSLSLQS AGRSSIKIAPF+
Sbjct: 239 SVSSYNPMREPFHRTFGSSLSLQSSAGRSSIKIAPFI 275

Query: 66   117
           
Sbjct: 299  275

The following BLAST results are available for this feature:
BLAST of CU171647 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L0L6_CUCSA1.4e-1094.59Uncharacterized protein OS=Cucumis sativus GN=Csa_4G099740 PE=4 SV=1[more]
BLAST of CU171647 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778691846|ref|XP_011653362.1|2.7e-1094.59PREDICTED: uncharacterized protein LOC101218523 isoform X1 [Cucumis sativus][more]
gi|700198513|gb|KGN53671.1|2.7e-1094.59hypothetical protein Csa_4G099740 [Cucumis sativus][more]
gi|659111150|ref|XP_008455604.1|2.7e-1094.59PREDICTED: uncharacterized protein LOC103495739 isoform X1 [Cucumis melo][more]
gi|778691849|ref|XP_011653363.1|2.7e-1094.59PREDICTED: uncharacterized protein LOC101218523 isoform X2 [Cucumis sativus][more]
gi|659111152|ref|XP_008455605.1|2.7e-1094.59PREDICTED: uncharacterized protein LOC103495739 isoform X2 [Cucumis melo][more]
Relationships

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa4G099740Csa4G099740gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
H0147704H0147704EST