CU171401 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU171401
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Sulfate transporter, putative
Location	Chr4 : 3064646 .. 3064851 (+)
Sequence length	205

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

GGAGATCATTGGCATCCATGAAAGGATACAACATTGATGGGAACAAAGAAATGGTTGCGTTAGGCTTCATGAACCTAGCTGGATCTCTTACTTCTTGCTATACAGCAACAGGTTCTCTGTCACGTTCAGCCGTTAATTTCAGTGCCGGTTGCGAGACGCCAGTTTCAAATGTAGTGATGGCGGTGACGGTGATGATATCATTGAA

Library


Library category	ESTs
hermaphrodite flower library	1

Homology

[Close]

BLAST of CU171401 vs. Swiss-Prot
Match: SUT22_ARATH (Sulfate transporter 2.2 OS=Arabidopsis thaliana GN=SULTR2;2 PE=1 SV=3)

HSP 1 Score: 111.7 bits (278), Expect = 3.1e-24
Identity = 52/67 (77.61%), Postives = 60/67 (89.55%), Query Frame = 3


Query: 3   RSLASMKGYNIDGNKEMVALGFMNLAGSLTSCYTATGSLSRSAVNFSAGCETPVSNVVMA 62
           RS A++KGY +DGNKEM+A+GFMN+AGSL+SCY ATGS SR+AVNFSAGCET VSN+VMA
Sbjct: 374 RSFATIKGYRLDGNKEMMAMGFMNIAGSLSSCYVATGSFSRTAVNFSAGCETVVSNIVMA 433

Query: 63  VTVMISL 122
           +TVMISL
Sbjct: 434 ITVMISL 440

Query: 123  182
           
Sbjct: 494  440

Query: 183  204
           
Sbjct: 554  440

[Close]

BLAST of CU171401 vs. Swiss-Prot
Match: SUT21_ARATH (Sulfate transporter 2.1 OS=Arabidopsis thaliana GN=SULTR2;1 PE=2 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 2.9e-22
Identity = 48/67 (71.64%), Postives = 57/67 (85.07%), Query Frame = 3


Query: 3   RSLASMKGYNIDGNKEMVALGFMNLAGSLTSCYTATGSLSRSAVNFSAGCETPVSNVVMA 62
           RS A +KGY +DGNKEMVA+GFMN+ GS TSCY ATGS SR+AVNF+AGCET +SN+VMA
Sbjct: 382 RSFAGIKGYRLDGNKEMVAIGFMNVLGSFTSCYAATGSFSRTAVNFAAGCETAMSNIVMA 441

Query: 63  VTVMISL 122
           VTV ++L
Sbjct: 442 VTVFVAL 448

Query: 123  182
           
Sbjct: 502  448

Query: 183  204
           
Sbjct: 562  448

[Close]

BLAST of CU171401 vs. Swiss-Prot
Match: SUT3_STYHA (Low affinity sulfate transporter 3 OS=Stylosanthes hamata GN=ST3 PE=2 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 3.8e-22
Identity = 48/67 (71.64%), Postives = 59/67 (88.06%), Query Frame = 3


Query: 3   RSLASMKGYNIDGNKEMVALGFMNLAGSLTSCYTATGSLSRSAVNFSAGCETPVSNVVMA 62
           RS A++KGY++DGNKEM+A+G MN+AGSLTSCY +TGS SR+AVNFSAGC+T VSN+VMA
Sbjct: 345 RSFANIKGYHLDGNKEMLAMGCMNIAGSLTSCYVSTGSFSRTAVNFSAGCKTAVSNIVMA 404

Query: 63  VTVMISL 122
           VTV++ L
Sbjct: 405 VTVLLCL 411

Query: 123  182
           
Sbjct: 465  411

Query: 183  204
           
Sbjct: 525  411

[Close]

BLAST of CU171401 vs. Swiss-Prot
Match: SUT12_ARATH (Sulfate transporter 1.2 OS=Arabidopsis thaliana GN=SULTR1;2 PE=1 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 2.1e-20
Identity = 44/67 (65.67%), Postives = 56/67 (83.58%), Query Frame = 3


Query: 3   RSLASMKGYNIDGNKEMVALGFMNLAGSLTSCYTATGSLSRSAVNFSAGCETPVSNVVMA 62
           R+ A+MK Y IDGNKEMVALG MN+ GS++SCY ATGS SRSAVNF AGC+T VSN++M+
Sbjct: 357 RTFAAMKDYQIDGNKEMVALGMMNVVGSMSSCYVATGSFSRSAVNFMAGCQTAVSNIIMS 416

Query: 63  VTVMISL 122
           + V+++L
Sbjct: 417 IVVLLTL 423

Query: 123  182
           
Sbjct: 477  423

Query: 183  204
           
Sbjct: 537  423

[Close]

BLAST of CU171401 vs. Swiss-Prot
Match: SUT2_STYHA (High affinity sulfate transporter 2 OS=Stylosanthes hamata GN=ST2 PE=2 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 2.1e-20
Identity = 45/67 (67.16%), Postives = 55/67 (82.09%), Query Frame = 3


Query: 3   RSLASMKGYNIDGNKEMVALGFMNLAGSLTSCYTATGSLSRSAVNFSAGCETPVSNVVMA 62
           R+ A+MK Y+IDGNKEMVA+G MN+ GSLTSCY  TGS SRSAVN+ AGC+T VSN+VMA
Sbjct: 367 RTFAAMKDYSIDGNKEMVAMGTMNIVGSLTSCYVTTGSFSRSAVNYMAGCKTAVSNIVMA 426

Query: 63  VTVMISL 122
           + V+++L
Sbjct: 427 IVVLLTL 433

Query: 123  182
           
Sbjct: 487  433

Query: 183  204
           
Sbjct: 547  433

[Close]

BLAST of CU171401 vs. TrEMBL
Match: A0A0A0KUB1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G031010 PE=3 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 2.5e-28
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 3


Query: 3   RSLASMKGYNIDGNKEMVALGFMNLAGSLTSCYTATGSLSRSAVNFSAGCETPVSNVVMA 62
           RSLASMKGYNIDGNKEMVALGFMNLAGSLTSCYTATGSLSRSAVNFSAGCETPVSNVVMA
Sbjct: 365 RSLASMKGYNIDGNKEMVALGFMNLAGSLTSCYTATGSLSRSAVNFSAGCETPVSNVVMA 424

Query: 63  VTVMISL 122
           VTVMISL
Sbjct: 425 VTVMISL 431

Query: 123  182
           
Sbjct: 485  431

Query: 183  204
           
Sbjct: 545  431

[Close]

BLAST of CU171401 vs. TrEMBL
Match: K4DG23_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 1.9e-23
Identity = 55/67 (82.09%), Postives = 62/67 (92.54%), Query Frame = 3


Query: 3   RSLASMKGYNIDGNKEMVALGFMNLAGSLTSCYTATGSLSRSAVNFSAGCETPVSNVVMA 62
           RS ASMKGY++DGNKEMVA+GFMN+ GSLTSCYTATGS SR+AVNFSAGCET VSN+VMA
Sbjct: 360 RSFASMKGYHLDGNKEMVAMGFMNIVGSLTSCYTATGSFSRTAVNFSAGCETVVSNIVMA 419

Query: 63  VTVMISL 122
           +TV ISL
Sbjct: 420 ITVFISL 426

Query: 123  182
           
Sbjct: 480  426

Query: 183  204
           
Sbjct: 540  426

[Close]

BLAST of CU171401 vs. TrEMBL
Match: M1AK98_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400009480 PE=3 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 5.4e-23
Identity = 55/67 (82.09%), Postives = 62/67 (92.54%), Query Frame = 3


Query: 3   RSLASMKGYNIDGNKEMVALGFMNLAGSLTSCYTATGSLSRSAVNFSAGCETPVSNVVMA 62
           RS ASMKGY++DGNKEMVA+G MNL GSLTSCYTATGS SR+AVNFSAGCET VSN+VMA
Sbjct: 354 RSFASMKGYHLDGNKEMVAMGCMNLVGSLTSCYTATGSFSRTAVNFSAGCETVVSNIVMA 413

Query: 63  VTVMISL 122
           +TV+ISL
Sbjct: 414 ITVLISL 420

Query: 123  182
           
Sbjct: 474  420

Query: 183  204
           
Sbjct: 534  420

[Close]

BLAST of CU171401 vs. TrEMBL
Match: F6H4M1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0031g00940 PE=3 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 5.4e-23
Identity = 54/67 (80.60%), Postives = 62/67 (92.54%), Query Frame = 3


Query: 3   RSLASMKGYNIDGNKEMVALGFMNLAGSLTSCYTATGSLSRSAVNFSAGCETPVSNVVMA 62
           RS AS+KGY++DGNKEMVALG MN+AGSLTSCY ATGS SRSAVNFSAGCET +SN+VMA
Sbjct: 358 RSFASIKGYHLDGNKEMVALGIMNIAGSLTSCYVATGSFSRSAVNFSAGCETAISNIVMA 417

Query: 63  VTVMISL 122
           +TV+ISL
Sbjct: 418 ITVLISL 424

Query: 123  182
           
Sbjct: 478  424

Query: 183  204
           
Sbjct: 538  424

[Close]

BLAST of CU171401 vs. TrEMBL
Match: B9RJF7_RICCO (Sulfate transporter, putative OS=Ricinus communis GN=RCOM_1033840 PE=3 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 7.1e-23
Identity = 53/67 (79.10%), Postives = 63/67 (94.03%), Query Frame = 3


Query: 3   RSLASMKGYNIDGNKEMVALGFMNLAGSLTSCYTATGSLSRSAVNFSAGCETPVSNVVMA 62
           RS AS+KGY++DGNKEMVA+GFMN+AGSLTSCY ATGS SR+AVNFSAGCET VSN+VMA
Sbjct: 361 RSFASIKGYHLDGNKEMVAMGFMNIAGSLTSCYVATGSFSRTAVNFSAGCETVVSNIVMA 420

Query: 63  VTVMISL 122
           +TV++SL
Sbjct: 421 ITVLLSL 427

Query: 123  182
           
Sbjct: 481  427

Query: 183  204
           
Sbjct: 541  427

[Close]

BLAST of CU171401 vs. NCBI nr
Match: gi|449462874|ref|XP_004149160.1| (PREDICTED: low affinity sulfate transporter 3-like [Cucumis sativus])

HSP 1 Score: 127.5 bits (319), Expect = 8.8e-27
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 3


Query: 3   RSLASMKGYNIDGNKEMVALGFMNLAGSLTSCYTATGSLSRSAVNFSAGCETPVSNVVMA 62
           RSLASMKGYNIDGNKEMVALGFMNLAGSLTSCYTATGSLSRSAVNFSAGCETPVSNVVMA
Sbjct: 365 RSLASMKGYNIDGNKEMVALGFMNLAGSLTSCYTATGSLSRSAVNFSAGCETPVSNVVMA 424

Query: 63  VTVMISL 122
           VTVMISL
Sbjct: 425 VTVMISL 431

Query: 123  182
           
Sbjct: 485  431

Query: 183  204
           
Sbjct: 545  431

[Close]

BLAST of CU171401 vs. NCBI nr
Match: gi|659107640|ref|XP_008453779.1| (PREDICTED: low affinity sulfate transporter 3-like [Cucumis melo])

HSP 1 Score: 127.5 bits (319), Expect = 8.8e-27
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 3


Query: 3   RSLASMKGYNIDGNKEMVALGFMNLAGSLTSCYTATGSLSRSAVNFSAGCETPVSNVVMA 62
           RSLASMKGYNIDGNKEMVALGFMNLAGSLTSCYTATGSLSRSAVNFSAGCETPVSNVVMA
Sbjct: 365 RSLASMKGYNIDGNKEMVALGFMNLAGSLTSCYTATGSLSRSAVNFSAGCETPVSNVVMA 424

Query: 63  VTVMISL 122
           VTVMISL
Sbjct: 425 VTVMISL 431

Query: 123  182
           
Sbjct: 485  431

Query: 183  204
           
Sbjct: 545  431

[Close]

BLAST of CU171401 vs. NCBI nr
Match: gi|970066288|ref|XP_015060127.1| (PREDICTED: LOW QUALITY PROTEIN: low affinity sulfate transporter 3-like [Solanum pennellii])

HSP 1 Score: 111.3 bits (277), Expect = 6.6e-22
Identity = 55/67 (82.09%), Postives = 62/67 (92.54%), Query Frame = 3


Query: 3   RSLASMKGYNIDGNKEMVALGFMNLAGSLTSCYTATGSLSRSAVNFSAGCETPVSNVVMA 62
           RS ASMKGY++DGNKEMVA+GFMN+ GSLTSCYTATGS SR+AVNFSAGCET VSN+VMA
Sbjct: 376 RSFASMKGYHLDGNKEMVAIGFMNIVGSLTSCYTATGSFSRTAVNFSAGCETVVSNIVMA 435

Query: 63  VTVMISL 122
           +TV ISL
Sbjct: 436 ITVFISL 442

Query: 123  182
           
Sbjct: 496  442

Query: 183  204
           
Sbjct: 556  442

[Close]

BLAST of CU171401 vs. NCBI nr
Match: gi|723751758|ref|XP_004252542.2| (PREDICTED: low affinity sulfate transporter 3-like [Solanum lycopersicum])

HSP 1 Score: 111.3 bits (277), Expect = 6.6e-22
Identity = 55/67 (82.09%), Postives = 62/67 (92.54%), Query Frame = 3


Query: 3   RSLASMKGYNIDGNKEMVALGFMNLAGSLTSCYTATGSLSRSAVNFSAGCETPVSNVVMA 62
           RS ASMKGY++DGNKEMVA+GFMN+ GSLTSCYTATGS SR+AVNFSAGCET VSN+VMA
Sbjct: 376 RSFASMKGYHLDGNKEMVAMGFMNIVGSLTSCYTATGSFSRTAVNFSAGCETVVSNIVMA 435

Query: 63  VTVMISL 122
           +TV ISL
Sbjct: 436 ITVFISL 442

Query: 123  182
           
Sbjct: 496  442

Query: 183  204
           
Sbjct: 556  442

[Close]

BLAST of CU171401 vs. NCBI nr
Match: gi|296082444|emb|CBI21449.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 109.8 bits (273), Expect = 1.9e-21
Identity = 54/67 (80.60%), Postives = 62/67 (92.54%), Query Frame = 3


Query: 3   RSLASMKGYNIDGNKEMVALGFMNLAGSLTSCYTATGSLSRSAVNFSAGCETPVSNVVMA 62
           RS AS+KGY++DGNKEMVALG MN+AGSLTSCY ATGS SRSAVNFSAGCET +SN+VMA
Sbjct: 344 RSFASIKGYHLDGNKEMVALGIMNIAGSLTSCYVATGSFSRSAVNFSAGCETAISNIVMA 403

Query: 63  VTVMISL 122
           +TV+ISL
Sbjct: 404 ITVLISL 410

Query: 123  182
           
Sbjct: 464  410

Query: 183  204
           
Sbjct: 524  410

The following BLAST results are available for this feature:

BLAST of CU171401 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SUT22_ARATH	3.1e-24	77.61	Sulfate transporter 2.2 OS=Arabidopsis thaliana GN=SULTR2;2 PE=1 SV=3	[more]
SUT21_ARATH	2.9e-22	71.64	Sulfate transporter 2.1 OS=Arabidopsis thaliana GN=SULTR2;1 PE=2 SV=1	[more]
SUT3_STYHA	3.8e-22	71.64	Low affinity sulfate transporter 3 OS=Stylosanthes hamata GN=ST3 PE=2 SV=1	[more]
SUT12_ARATH	2.1e-20	65.67	Sulfate transporter 1.2 OS=Arabidopsis thaliana GN=SULTR1;2 PE=1 SV=1	[more]
SUT2_STYHA	2.1e-20	67.16	High affinity sulfate transporter 2 OS=Stylosanthes hamata GN=ST2 PE=2 SV=1	[more]

BLAST of CU171401 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KUB1_CUCSA	2.5e-28	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G031010 PE=3 SV=1	[more]
K4DG23_SOLLC	1.9e-23	82.09	Uncharacterized protein OS=Solanum lycopersicum PE=3 SV=1	[more]
M1AK98_SOLTU	5.4e-23	82.09	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400009480 PE=3 SV=1	[more]
F6H4M1_VITVI	5.4e-23	80.60	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0031g00940 PE=3 SV=...	[more]
B9RJF7_RICCO	7.1e-23	79.10	Sulfate transporter, putative OS=Ricinus communis GN=RCOM_1033840 PE=3 SV=1	[more]

BLAST of CU171401 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449462874\|ref\|XP_004149160.1\|	8.8e-27	100.00	PREDICTED: low affinity sulfate transporter 3-like [Cucumis sativus]	[more]
gi\|659107640\|ref\|XP_008453779.1\|	8.8e-27	100.00	PREDICTED: low affinity sulfate transporter 3-like [Cucumis melo]	[more]
gi\|970066288\|ref\|XP_015060127.1\|	6.6e-22	82.09	PREDICTED: LOW QUALITY PROTEIN: low affinity sulfate transporter 3-like [Solanum...	[more]
gi\|723751758\|ref\|XP_004252542.2\|	6.6e-22	82.09	PREDICTED: low affinity sulfate transporter 3-like [Solanum lycopersicum]	[more]
gi\|296082444\|emb\|CBI21449.3\|	1.9e-21	80.60	unnamed protein product [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR001902	SLC26A/SulP_fam
IPR011547	SLC26A/SulP_dom

Vocabulary: **Biological Process**
Term	Definition
GO:0008272	sulfate transport
GO:0055085	transmembrane transport

Vocabulary: **Molecular Function**
Term	Definition
GO:0015116	sulfate transmembrane transporter activity
GO:0008271	secondary active sulfate transmembrane transporter activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008272	sulfate transport
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0008271	secondary active sulfate transmembrane transporter activity
molecular_function	GO:0015116	sulfate transmembrane transporter activity

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa4G031010	Csa4G031010	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
H0145705	H0145705	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001902	SLC26A/SulP transporter	PANTHER	PTHR11814	SULFATE TRANSPORTER	coord: 2..68 score: 5.9
IPR011547	SLC26A/SulP transporter domain	PFAM	PF00916	Sulfate_transp	coord: 2..68 score: 1.7