CU171328 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU171328
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr6 : 6821450 .. 6821668 (+)
Sequence length	225

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

CCGACTCTTGTTTGCAGTATTCTATGCTCCAGTTTTGCAGCCTGCAACCATAAATTTTCACTGAATTTGGTATTGACTTTGCTCCCCTTGGCGATCACTGCCTTTGCCTCATCTGGGCTAGCCAGCCTACAAGCTTCCAACCACACATCTTCATTCTTGGGACACTCTTCACATCCTTTTTGAATCAATTGCCTCGCTGCTTGAATCCTTCCCTGCCTACTTCCT

Library


Library category	ESTs
hermaphrodite flower library	1

Homology

[Close]

BLAST of CU171328 vs. Swiss-Prot
Match: STA1_ARATH (Protein STABILIZED1 OS=Arabidopsis thaliana GN=STA1 PE=1 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 9.8e-19
Identity = 45/65 (69.23%), Postives = 52/65 (80.00%), Query Frame = -2


Query: 18  GRIQAARQLIQKGCEECPKNEDVWLEACRLASPDEAKAVIAKGSKVNTKFSENLWLQAAK 77
           G+I+AAR  IQ+GCEECPKNEDVWLEACRLA+P++AK VIAKG K+    S  LWL+AAK
Sbjct: 401 GKIKAARFQIQRGCEECPKNEDVWLEACRLANPEDAKGVIAKGVKLIPN-SVKLWLEAAK 460

Query: 78  LEHRI 137
           LEH +
Sbjct: 461 LEHDV 464

Query: 138  197
           
Sbjct: 521  464

Query: 198  213
           
Sbjct: 581  464

[Close]

BLAST of CU171328 vs. Swiss-Prot
Match: PRP6_BOVIN (Pre-mRNA-processing factor 6 OS=Bos taurus GN=PRPF6 PE=2 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.4e-09
Identity = 32/62 (51.61%), Postives = 42/62 (67.74%), Query Frame = -2


Query: 27  GRIQAARQLIQKGCEECPKNEDVWLEACRLASPDEAKAVIAKGSKVNTKFSENLWLQAAK 86
           G++Q AR LI KG E CPK+EDVWLEA RL   D AKAV+A+  + +   S  ++++AA+
Sbjct: 323 GKLQVARNLIMKGTEMCPKSEDVWLEAARLQPGDTAKAVVAQAVR-HLPQSVRIYIRAAE 382

Query: 87  LE 146
           LE
Sbjct: 383 LE 383

Query: 147  206
           
Sbjct: 443  383

Query: 207  213
           
Sbjct: 503  383

[Close]

BLAST of CU171328 vs. Swiss-Prot
Match: PRP6_HUMAN (Pre-mRNA-processing factor 6 OS=Homo sapiens GN=PRPF6 PE=1 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.4e-09
Identity = 32/62 (51.61%), Postives = 42/62 (67.74%), Query Frame = -2


Query: 27  GRIQAARQLIQKGCEECPKNEDVWLEACRLASPDEAKAVIAKGSKVNTKFSENLWLQAAK 86
           G++Q AR LI KG E CPK+EDVWLEA RL   D AKAV+A+  + +   S  ++++AA+
Sbjct: 323 GKLQVARNLIMKGTEMCPKSEDVWLEAARLQPGDTAKAVVAQAVR-HLPQSVRIYIRAAE 382

Query: 87  LE 146
           LE
Sbjct: 383 LE 383

Query: 147  206
           
Sbjct: 443  383

Query: 207  213
           
Sbjct: 503  383

[Close]

BLAST of CU171328 vs. Swiss-Prot
Match: PRP6_MOUSE (Pre-mRNA-processing factor 6 OS=Mus musculus GN=Prpf6 PE=1 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.4e-09
Identity = 32/62 (51.61%), Postives = 42/62 (67.74%), Query Frame = -2


Query: 27  GRIQAARQLIQKGCEECPKNEDVWLEACRLASPDEAKAVIAKGSKVNTKFSENLWLQAAK 86
           G++Q AR LI KG E CPK+EDVWLEA RL   D AKAV+A+  + +   S  ++++AA+
Sbjct: 323 GKLQVARNLIMKGTEMCPKSEDVWLEAARLQPGDTAKAVVAQAVR-HLPQSVRIYIRAAE 382

Query: 87  LE 146
           LE
Sbjct: 383 LE 383

Query: 147  206
           
Sbjct: 443  383

Query: 207  213
           
Sbjct: 503  383

[Close]

BLAST of CU171328 vs. Swiss-Prot
Match: PRP6_PONAB (Pre-mRNA-processing factor 6 OS=Pongo abelii GN=PRPF6 PE=2 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.4e-09
Identity = 32/62 (51.61%), Postives = 42/62 (67.74%), Query Frame = -2


Query: 27  GRIQAARQLIQKGCEECPKNEDVWLEACRLASPDEAKAVIAKGSKVNTKFSENLWLQAAK 86
           G++Q AR LI KG E CPK+EDVWLEA RL   D AKAV+A+  +   +F   ++++AA+
Sbjct: 323 GKLQVARNLIMKGTEMCPKSEDVWLEAARLQPGDTAKAVVAQAVRHLPQF-VRIYIRAAE 382

Query: 87  LE 146
           LE
Sbjct: 383 LE 383

Query: 147  206
           
Sbjct: 443  383

Query: 207  213
           
Sbjct: 503  383

[Close]

BLAST of CU171328 vs. TrEMBL
Match: E5GCN8_CUCME (Pre-mRNA splicing factor (Fragment) OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 3.3e-21
Identity = 54/63 (85.71%), Postives = 57/63 (90.48%), Query Frame = -2


Query: 24  GRIQAARQLIQKGCEECPKNEDVWLEACRLASPDEAKAVIAKGSKVNTKFSENLWLQAAK 83
           G+IQAARQLIQKGCEECPKNEDVWLEACRLASPDEAKAVIAKG+K +   S  LWLQAAK
Sbjct: 101 GKIQAARQLIQKGCEECPKNEDVWLEACRLASPDEAKAVIAKGAK-SIPNSVKLWLQAAK 160

Query: 84  LEH 143
           LEH
Sbjct: 161 LEH 162

Query: 144  203
           
Sbjct: 221  162

Query: 204  213
           
Sbjct: 281  162

[Close]

BLAST of CU171328 vs. TrEMBL
Match: A0A0A0KDS6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G104100 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 3.3e-21
Identity = 54/63 (85.71%), Postives = 57/63 (90.48%), Query Frame = -2


Query: 24  GRIQAARQLIQKGCEECPKNEDVWLEACRLASPDEAKAVIAKGSKVNTKFSENLWLQAAK 83
           G+IQAARQLIQKGCEECPKNEDVWLEACRLASPDEAKAVIAKG+K +   S  LWLQAAK
Sbjct: 397 GKIQAARQLIQKGCEECPKNEDVWLEACRLASPDEAKAVIAKGAK-SIPNSVKLWLQAAK 456

Query: 84  LEH 143
           LEH
Sbjct: 457 LEH 458

Query: 144  203
           
Sbjct: 517  458

Query: 204  213
           
Sbjct: 577  458

[Close]

BLAST of CU171328 vs. TrEMBL
Match: A0A0D2SKM0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G202800 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 2.1e-20
Identity = 53/63 (84.13%), Postives = 55/63 (87.30%), Query Frame = -2


Query: 24  GRIQAARQLIQKGCEECPKNEDVWLEACRLASPDEAKAVIAKGSKVNTKFSENLWLQAAK 83
           G+IQ ARQLIQKGCEECPKNEDVWLEACRLASPDEAKAVIAKG K +   S  LWLQAAK
Sbjct: 406 GKIQTARQLIQKGCEECPKNEDVWLEACRLASPDEAKAVIAKGVK-SIPNSVKLWLQAAK 465

Query: 84  LEH 143
           LEH
Sbjct: 466 LEH 467

Query: 144  203
           
Sbjct: 526  467

Query: 204  213
           
Sbjct: 586  467

[Close]

BLAST of CU171328 vs. TrEMBL
Match: A0A0D2SKM0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G202800 PE=4 SV=1)

HSP 1 Score: 32.3 bits (72), Expect = 3.0e+02
Identity = 16/56 (28.57%), Postives = 27/56 (48.21%), Query Frame = -2


Query: 30  ARQLIQKGCEECPKNEDVWLEACRLASPDEAKAVIAKGSKVNTKFSENLWLQAAKL 89
           A+ +I KG +  P +  +WL+A +L   D  K+ + +    N   S  LW    +L
Sbjct: 441 AKAVIAKGVKSIPNSVKLWLQAAKLEHDDVNKSRVLRRGLENIPDSVRLWKAVVEL 496

Query: 90   149
           
Sbjct: 501  496

Query: 150  198
           
Sbjct: 561  496

HSP 2 Score: 105.5 bits (262), Expect = 2.8e-20
Identity = 52/63 (82.54%), Postives = 55/63 (87.30%), Query Frame = -2


Query: 24  GRIQAARQLIQKGCEECPKNEDVWLEACRLASPDEAKAVIAKGSKVNTKFSENLWLQAAK 83
           G+IQAARQLI KGCEECPKNEDVWLEACRLASPDEAKAVIAKG K  +  S  LW+QAAK
Sbjct: 397 GKIQAARQLIHKGCEECPKNEDVWLEACRLASPDEAKAVIAKGVKAISN-SVKLWMQAAK 456

Query: 84  LEH 143
           LEH
Sbjct: 457 LEH 458

Query: 144  203
           
Sbjct: 517  458

Query: 204  213
           
Sbjct: 577  458

[Close]

BLAST of CU171328 vs. TrEMBL
Match: A5BAD3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_024588 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 2.8e-20
Identity = 52/63 (82.54%), Postives = 55/63 (87.30%), Query Frame = -2


Query: 24  GRIQAARQLIQKGCEECPKNEDVWLEACRLASPDEAKAVIAKGSKVNTKFSENLWLQAAK 83
           G+IQAARQLI KGCEECPKNEDVWLEACRLASPDEAKAVIAKG K  +  S  LW+QAAK
Sbjct: 397 GKIQAARQLIHKGCEECPKNEDVWLEACRLASPDEAKAVIAKGVKAISN-SVKLWMQAAK 456

Query: 84  LEH 143
           LEH
Sbjct: 457 LEH 458

Query: 144  203
           
Sbjct: 517  458

Query: 204  213
           
Sbjct: 577  458

[Close]

BLAST of CU171328 vs. NCBI nr
Match: gi|449445509|ref|XP_004140515.1| (PREDICTED: protein STABILIZED1 [Cucumis sativus])

HSP 1 Score: 108.2 bits (269), Expect = 6.1e-21
Identity = 54/63 (85.71%), Postives = 57/63 (90.48%), Query Frame = -2


Query: 24  GRIQAARQLIQKGCEECPKNEDVWLEACRLASPDEAKAVIAKGSKVNTKFSENLWLQAAK 83
           G+IQAARQLIQKGCEECPKNEDVWLEACRLASPDEAKAVIAKG+K +   S  LWLQAAK
Sbjct: 397 GKIQAARQLIQKGCEECPKNEDVWLEACRLASPDEAKAVIAKGAK-SIPNSVKLWLQAAK 456

Query: 84  LEH 143
           LEH
Sbjct: 457 LEH 458

Query: 144  203
           
Sbjct: 517  458

Query: 204  213
           
Sbjct: 577  458

[Close]

BLAST of CU171328 vs. NCBI nr
Match: gi|307136430|gb|ADN34237.1| (pre-mRNA splicing factor [Cucumis melo subsp. melo])

HSP 1 Score: 108.2 bits (269), Expect = 6.1e-21
Identity = 54/63 (85.71%), Postives = 57/63 (90.48%), Query Frame = -2


Query: 24  GRIQAARQLIQKGCEECPKNEDVWLEACRLASPDEAKAVIAKGSKVNTKFSENLWLQAAK 83
           G+IQAARQLIQKGCEECPKNEDVWLEACRLASPDEAKAVIAKG+K +   S  LWLQAAK
Sbjct: 101 GKIQAARQLIQKGCEECPKNEDVWLEACRLASPDEAKAVIAKGAK-SIPNSVKLWLQAAK 160

Query: 84  LEH 143
           LEH
Sbjct: 161 LEH 162

Query: 144  203
           
Sbjct: 221  162

Query: 204  213
           
Sbjct: 281  162

[Close]

BLAST of CU171328 vs. NCBI nr
Match: gi|659119667|ref|XP_008459779.1| (PREDICTED: pre-mRNA-processing factor 6 [Cucumis melo])

HSP 1 Score: 108.2 bits (269), Expect = 6.1e-21
Identity = 54/63 (85.71%), Postives = 57/63 (90.48%), Query Frame = -2


Query: 24  GRIQAARQLIQKGCEECPKNEDVWLEACRLASPDEAKAVIAKGSKVNTKFSENLWLQAAK 83
           G+IQAARQLIQKGCEECPKNEDVWLEACRLASPDEAKAVIAKG+K +   S  LWLQAAK
Sbjct: 397 GKIQAARQLIQKGCEECPKNEDVWLEACRLASPDEAKAVIAKGAK-SIPNSVKLWLQAAK 456

Query: 84  LEH 143
           LEH
Sbjct: 457 LEH 458

Query: 144  203
           
Sbjct: 517  458

Query: 204  213
           
Sbjct: 577  458

[Close]

BLAST of CU171328 vs. NCBI nr
Match: gi|823159762|ref|XP_012479715.1| (PREDICTED: protein STABILIZED1 [Gossypium raimondii])

HSP 1 Score: 105.5 bits (262), Expect = 4.0e-20
Identity = 53/63 (84.13%), Postives = 55/63 (87.30%), Query Frame = -2


Query: 24  GRIQAARQLIQKGCEECPKNEDVWLEACRLASPDEAKAVIAKGSKVNTKFSENLWLQAAK 83
           G+IQ ARQLIQKGCEECPKNEDVWLEACRLASPDEAKAVIAKG K +   S  LWLQAAK
Sbjct: 406 GKIQTARQLIQKGCEECPKNEDVWLEACRLASPDEAKAVIAKGVK-SIPNSVKLWLQAAK 465

Query: 84  LEH 143
           LEH
Sbjct: 466 LEH 467

Query: 144  203
           
Sbjct: 526  467

Query: 204  213
           
Sbjct: 586  467

[Close]

BLAST of CU171328 vs. NCBI nr
Match: gi|672178533|ref|XP_008809401.1| (PREDICTED: protein STABILIZED1 [Phoenix dactylifera])

HSP 1 Score: 105.5 bits (262), Expect = 4.0e-20
Identity = 53/63 (84.13%), Postives = 54/63 (85.71%), Query Frame = -2


Query: 24  GRIQAARQLIQKGCEECPKNEDVWLEACRLASPDEAKAVIAKGSKVNTKFSENLWLQAAK 83
           G+IQ ARQLIQKGCEECPKNEDVWLEACRLASPDEAKAVIAKG K     S  LWLQAAK
Sbjct: 407 GKIQVARQLIQKGCEECPKNEDVWLEACRLASPDEAKAVIAKGVKAIPN-SVKLWLQAAK 466

Query: 84  LEH 143
           LEH
Sbjct: 467 LEH 468

Query: 144  203
           
Sbjct: 527  468

Query: 204  213
           
Sbjct: 587  468

The following BLAST results are available for this feature:

BLAST of CU171328 vs. Swiss-Prot


Match Name	E-value	Identity	Description
STA1_ARATH	9.8e-19	69.23	Protein STABILIZED1 OS=Arabidopsis thaliana GN=STA1 PE=1 SV=1	[more]
PRP6_BOVIN	1.4e-09	51.61	Pre-mRNA-processing factor 6 OS=Bos taurus GN=PRPF6 PE=2 SV=1	[more]
PRP6_HUMAN	1.4e-09	51.61	Pre-mRNA-processing factor 6 OS=Homo sapiens GN=PRPF6 PE=1 SV=1	[more]
PRP6_MOUSE	1.4e-09	51.61	Pre-mRNA-processing factor 6 OS=Mus musculus GN=Prpf6 PE=1 SV=1	[more]
PRP6_PONAB	1.4e-09	51.61	Pre-mRNA-processing factor 6 OS=Pongo abelii GN=PRPF6 PE=2 SV=1	[more]

BLAST of CU171328 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GCN8_CUCME	3.3e-21	85.71	Pre-mRNA splicing factor (Fragment) OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A0A0A0KDS6_CUCSA	3.3e-21	85.71	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G104100 PE=4 SV=1	[more]
A0A0D2SKM0_GOSRA	2.1e-20	84.13	Uncharacterized protein OS=Gossypium raimondii GN=B456_005G202800 PE=4 SV=1	[more]
A0A0D2SKM0_GOSRA	3.0e+02	28.57	Uncharacterized protein OS=Gossypium raimondii GN=B456_005G202800 PE=4 SV=1	[more]
A5BAD3_VITVI	2.8e-20	82.54	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_024588 PE=4 SV=1	[more]

BLAST of CU171328 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449445509\|ref\|XP_004140515.1\|	6.1e-21	85.71	PREDICTED: protein STABILIZED1 [Cucumis sativus]	[more]
gi\|307136430\|gb\|ADN34237.1\|	6.1e-21	85.71	pre-mRNA splicing factor [Cucumis melo subsp. melo]	[more]
gi\|659119667\|ref\|XP_008459779.1\|	6.1e-21	85.71	PREDICTED: pre-mRNA-processing factor 6 [Cucumis melo]	[more]
gi\|823159762\|ref\|XP_012479715.1\|	4.0e-20	84.13	PREDICTED: protein STABILIZED1 [Gossypium raimondii]	[more]
gi\|672178533\|ref\|XP_008809401.1\|	4.0e-20	84.13	PREDICTED: protein STABILIZED1 [Phoenix dactylifera]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom_sf
IPR027108	Prp6/Prp1/STA1

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **Biological Process**
Term	Definition
GO:0000398	mRNA splicing, via spliceosome

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
molecular_function	GO:0005515	protein binding

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa6G104100	Csa6G104100	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
H0145167	H0145167	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain	unknown	SSF48452	TPR-like	coord: 4..69 score: 4.
IPR027108	Pre-mRNA-processing factor 6/Prp1/STA1	PANTHER	PTHR11246:SF1	PRE-MRNA-PROCESSING FACTOR 6	coord: 4..74 score: 1.6
None	No IPR available	PANTHER	PTHR11246	PRE-MRNA SPLICING FACTOR	coord: 4..74 score: 1.6