CU170559 (transcribed_cluster) Cucumber (Chinese Long) v2

NameCU170559
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr4 : 10132039 .. 10132269 (-)
Sequence length239
The following sequences are available for this feature:

transcribed_cluster sequence

TGAATCGGTTAACAGAGGTAAGGAGATTCGTCGGTACGATATGATTGACCAGCGTATTGAATAATAATTGGAATCAACTATGAAGTTGTTGAAGAATTGTTTCTATCAGCAGAGAGGAAATTTCAGAGAGAATTATGATGGTCTCTTGCGTAGGTGGAGAGCTTCCTCAATTTTTGTAAACTTTTTACCCCCCTTCAATCCATTCTTGGTGTTATCACAAGCACAATACATAGCAGCAT
BLAST of CU170559 vs. TrEMBL
Match: A0A0A0L064_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G242870 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 7.5e-16
Identity = 47/58 (81.03%), Postives = 52/58 (89.66%), Query Frame = 2

Query: 5   SVNRGKEIRRY--DMIDQRIE**LESTMKLLKNCFYQQRGNFRENYDGLLRRWRASSI 64
           ++NR  E+RR+  DMIDQRI+  LESTMKLLKNCFYQQRGNFRENYDGLLRRWRASSI
Sbjct: 430 NLNRLTEVRRFADDMIDQRIDI-LESTMKLLKNCFYQQRGNFRENYDGLLRRWRASSI 486

Query: 65  124
           
Sbjct: 490 486

Query: 125 173
           
Sbjct: 550 486

BLAST of CU170559 vs. NCBI nr
Match: gi|449466215|ref|XP_004150822.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g77360, mitochondrial-like isoform X1 [Cucumis sativus])

HSP 1 Score: 92.8 bits (229), Expect = 2.8e-16
Identity = 47/58 (81.03%), Postives = 52/58 (89.66%), Query Frame = 2

Query: 5   SVNRGKEIRRY--DMIDQRIE**LESTMKLLKNCFYQQRGNFRENYDGLLRRWRASSI 64
           ++NR  E+RR+  DMIDQRI+  LESTMKLLKNCFYQQRGNFRENYDGLLRRWRASSI
Sbjct: 430 NLNRLTEVRRFADDMIDQRIDI-LESTMKLLKNCFYQQRGNFRENYDGLLRRWRASSI 486

Query: 65  124
           
Sbjct: 490 486

Query: 125 173
           
Sbjct: 550 486

BLAST of CU170559 vs. NCBI nr
Match: gi|659087034|ref|XP_008444241.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g77360, mitochondrial-like isoform X1 [Cucumis melo])

HSP 1 Score: 87.0 bits (214), Expect = 1.6e-14
Identity = 45/58 (77.59%), Postives = 50/58 (86.21%), Query Frame = 2

Query: 5   SVNRGKEIRRY--DMIDQRIE**LESTMKLLKNCFYQQRGNFRENYDGLLRRWRASSI 64
           ++NR  E+R +  DMIDQRIE  LESTMKLLKNCFY QRG+FRENYDGLLRRWRASSI
Sbjct: 430 NLNRLTEVRSFADDMIDQRIEI-LESTMKLLKNCFYLQRGSFRENYDGLLRRWRASSI 486

Query: 65  124
           
Sbjct: 490 486

Query: 125 173
           
Sbjct: 550 486

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0L064_CUCSA7.5e-1681.03Uncharacterized protein OS=Cucumis sativus GN=Csa_4G242870 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|449466215|ref|XP_004150822.1|2.8e-1681.03PREDICTED: pentatricopeptide repeat-containing protein At1g77360, mitochondrial-... [more]
gi|659087034|ref|XP_008444241.1|1.6e-1477.59PREDICTED: pentatricopeptide repeat-containing protein At1g77360, mitochondrial-... [more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa4G242870Csa4G242870gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
H0138794H0138794EST