CU170254 (transcribed_cluster) Cucumber (Chinese Long) v2

Overview
NameCU170254
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionGametogenetin-binding 2
LocationChr4 : 18526677 .. 18527073 (-)
Sequence length186
Genome Viewer
Sequences
The following sequences are available for this feature:

transcribed_cluster sequence

GGGAAAATATTAGGAGGTTTTTTGGTAGCATGCTGAAGAGGCCGAGGAAGAGGAGGAGGATGATTCCATTGATAAAGAATTACAAAACGAATTTGGATGGAGATTGTTCTCGTCCACAAAAGCATGCAAAGAGTCCTGAACTGGCTCGGGAGTTTCTTTTGGATGCTGCAACTGTCATCTTTAAAG
Homology
[Close]
BLAST of CU170254 vs. TrEMBL
Match: A0A0A0KZE9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G563700 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 4.8e-10
Identity = 39/61 (63.93%), Postives = 42/61 (68.85%), Query Frame = 3 

Query: 3   ENIRRFFGSMLKRPRKRRRMIPLIKNYKTNLDGDCSRPQKHAKSPELAREFLLDAATVIF 62
           ENIRRFF    +   +       I     +LDGDCSRPQKHAKSPELAREFLLDAATVIF
Sbjct: 406 ENIRRFFEHAEEAEEEEED--DSIDKDSNDLDGDCSRPQKHAKSPELAREFLLDAATVIF 464

Query: 63  K 122
           K
Sbjct: 466 K 464

Query: 123  182
           
Sbjct: 526  464

Query: 183  186
           
Sbjct: 586  464

[Close]
BLAST of CU170254 vs. TrEMBL
Match: D7LVZ5_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_486257 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 2.4e-09
Identity = 37/61 (60.66%), Postives = 42/61 (68.85%), Query Frame = 3 

Query: 3   ENIRRFFGSMLKRPRKRRRMIPLIKNYKTNLDGDCSRPQKHAKSPELAREFLLDAATVIF 62
           ENIRRFF    +   +      ++      LDG+CSRPQKHAKSPELAREFLLDAATVIF
Sbjct: 425 ENIRRFFEHAEEAEEEEDE--DMMDKDGNELDGECSRPQKHAKSPELAREFLLDAATVIF 483

Query: 63  K 122
           K
Sbjct: 485 K 483

Query: 123  182
           
Sbjct: 545  483

Query: 183  186
           
Sbjct: 605  483

[Close]
BLAST of CU170254 vs. TrEMBL
Match: V7BIE2_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G261300g PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 4.0e-09
Identity = 38/61 (62.30%), Postives = 42/61 (68.85%), Query Frame = 3 

Query: 3   ENIRRFFGSMLKRPRKRRRMIPLIKNYKTNLDGDCSRPQKHAKSPELAREFLLDAATVIF 62
           E+IRRFF    +   +      LI      LDG+CSRPQKHAKSPELAREFLLDAATVIF
Sbjct: 396 ESIRRFFEHAEEAEEEEDD--DLIDEDGNELDGECSRPQKHAKSPELAREFLLDAATVIF 454

Query: 63  K 122
           K
Sbjct: 456 K 454

Query: 123  182
           
Sbjct: 516  454

Query: 183  186
           
Sbjct: 576  454

[Close]
BLAST of CU170254 vs. TrEMBL
Match: I1L2K3_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=2)

HSP 1 Score: 67.4 bits (163), Expect = 6.9e-09
Identity = 37/61 (60.66%), Postives = 42/61 (68.85%), Query Frame = 3 

Query: 3   ENIRRFFGSMLKRPRKRRRMIPLIKNYKTNLDGDCSRPQKHAKSPELAREFLLDAATVIF 62
           E+IRRFF    +   +      L+      LDG+CSRPQKHAKSPELAREFLLDAATVIF
Sbjct: 284 ESIRRFFEHAEEAEEEEDD--DLMDEEGNELDGECSRPQKHAKSPELAREFLLDAATVIF 342

Query: 63  K 122
           K
Sbjct: 344 K 342

Query: 123  182
           
Sbjct: 404  342

Query: 183  186
           
Sbjct: 464  342

[Close]
BLAST of CU170254 vs. TrEMBL
Match: A0A0R0IDG5_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_09G109000 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 6.9e-09
Identity = 37/61 (60.66%), Postives = 42/61 (68.85%), Query Frame = 3 

Query: 3   ENIRRFFGSMLKRPRKRRRMIPLIKNYKTNLDGDCSRPQKHAKSPELAREFLLDAATVIF 62
           E+IRRFF    +   +      L+      LDG+CSRPQKHAKSPELAREFLLDAATVIF
Sbjct: 397 ESIRRFFEHAEEAEEEEDD--DLMDEEGNELDGECSRPQKHAKSPELAREFLLDAATVIF 455

Query: 63  K 122
           K
Sbjct: 457 K 455

Query: 123  182
           
Sbjct: 517  455

Query: 183  186
           
Sbjct: 577  455

[Close]
BLAST of CU170254 vs. NCBI nr
Match: gi|778695132|ref|XP_011653932.1| (PREDICTED: uncharacterized protein LOC101210448 [Cucumis sativus])

HSP 1 Score: 70.9 bits (172), Expect = 8.9e-10
Identity = 39/61 (63.93%), Postives = 42/61 (68.85%), Query Frame = 3 

Query: 3   ENIRRFFGSMLKRPRKRRRMIPLIKNYKTNLDGDCSRPQKHAKSPELAREFLLDAATVIF 62
           ENIRRFF    +   +       I     +LDGDCSRPQKHAKSPELAREFLLDAATVIF
Sbjct: 406 ENIRRFFEHAEEAEEEEED--DSIDKDSNDLDGDCSRPQKHAKSPELAREFLLDAATVIF 464

Query: 63  K 122
           K
Sbjct: 466 K 464

Query: 123  182
           
Sbjct: 526  464

Query: 183  186
           
Sbjct: 586  464

[Close]
BLAST of CU170254 vs. NCBI nr
Match: gi|659083255|ref|XP_008442254.1| (PREDICTED: uncharacterized protein LOC103486163 [Cucumis melo])

HSP 1 Score: 70.9 bits (172), Expect = 8.9e-10
Identity = 39/61 (63.93%), Postives = 42/61 (68.85%), Query Frame = 3 

Query: 3   ENIRRFFGSMLKRPRKRRRMIPLIKNYKTNLDGDCSRPQKHAKSPELAREFLLDAATVIF 62
           ENIRRFF    +   +       I     +LDGDCSRPQKHAKSPELAREFLLDAATVIF
Sbjct: 406 ENIRRFFEHAEEAEEEEED--DSIDKDSNDLDGDCSRPQKHAKSPELAREFLLDAATVIF 464

Query: 63  K 122
           K
Sbjct: 466 K 464

Query: 123  182
           
Sbjct: 526  464

Query: 183  186
           
Sbjct: 586  464

[Close]
BLAST of CU170254 vs. NCBI nr
Match: gi|297817144|ref|XP_002876455.1| (hypothetical protein ARALYDRAFT_486257 [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 68.6 bits (166), Expect = 4.4e-09
Identity = 37/61 (60.66%), Postives = 42/61 (68.85%), Query Frame = 3 

Query: 3   ENIRRFFGSMLKRPRKRRRMIPLIKNYKTNLDGDCSRPQKHAKSPELAREFLLDAATVIF 62
           ENIRRFF    +   +      ++      LDG+CSRPQKHAKSPELAREFLLDAATVIF
Sbjct: 425 ENIRRFFEHAEEAEEEEDE--DMMDKDGNELDGECSRPQKHAKSPELAREFLLDAATVIF 483

Query: 63  K 122
           K
Sbjct: 485 K 483

Query: 123  182
           
Sbjct: 545  483

Query: 183  186
           
Sbjct: 605  483

[Close]
BLAST of CU170254 vs. NCBI nr
Match: gi|593690208|ref|XP_007145705.1| (hypothetical protein PHAVU_007G261300g [Phaseolus vulgaris])

HSP 1 Score: 67.8 bits (164), Expect = 7.6e-09
Identity = 38/61 (62.30%), Postives = 42/61 (68.85%), Query Frame = 3 

Query: 3   ENIRRFFGSMLKRPRKRRRMIPLIKNYKTNLDGDCSRPQKHAKSPELAREFLLDAATVIF 62
           E+IRRFF    +   +      LI      LDG+CSRPQKHAKSPELAREFLLDAATVIF
Sbjct: 396 ESIRRFFEHAEEAEEEEDD--DLIDEDGNELDGECSRPQKHAKSPELAREFLLDAATVIF 454

Query: 63  K 122
           K
Sbjct: 456 K 454

Query: 123  182
           
Sbjct: 516  454

Query: 183  186
           
Sbjct: 576  454

[Close]
BLAST of CU170254 vs. NCBI nr
Match: gi|729302470|ref|XP_010524691.1| (PREDICTED: uncharacterized protein LOC104802668 isoform X2 [Tarenaya hassleriana])

HSP 1 Score: 67.4 bits (163), Expect = 9.9e-09
Identity = 37/61 (60.66%), Postives = 42/61 (68.85%), Query Frame = 3 

Query: 3   ENIRRFFGSMLKRPRKRRRMIPLIKNYKTNLDGDCSRPQKHAKSPELAREFLLDAATVIF 62
           E+IRRFF    +   +      L+      LDG+CSRPQKHAKSPELAREFLLDAATVIF
Sbjct: 395 ESIRRFFEHAEEAEEEEDE--DLMDKDGNELDGECSRPQKHAKSPELAREFLLDAATVIF 453

Query: 63  K 122
           K
Sbjct: 455 K 453

Query: 123  182
           
Sbjct: 515  453

Query: 183  186
           
Sbjct: 575  453

The following BLAST results are available for this feature:
BLAST of CU170254 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KZE9_CUCSA4.8e-1063.93Uncharacterized protein OS=Cucumis sativus GN=Csa_4G563700 PE=4 SV=1[more]
D7LVZ5_ARALL2.4e-0960.66Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRA... [more]
V7BIE2_PHAVU4.0e-0962.30Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G261300g PE=4 SV=1[more]
I1L2K3_SOYBN6.9e-0960.66Uncharacterized protein OS=Glycine max PE=4 SV=2[more]
A0A0R0IDG5_SOYBN6.9e-0960.66Uncharacterized protein OS=Glycine max GN=GLYMA_09G109000 PE=4 SV=1[more]
BLAST of CU170254 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778695132|ref|XP_011653932.1|8.9e-1063.93PREDICTED: uncharacterized protein LOC101210448 [Cucumis sativus][more]
gi|659083255|ref|XP_008442254.1|8.9e-1063.93PREDICTED: uncharacterized protein LOC103486163 [Cucumis melo][more]
gi|297817144|ref|XP_002876455.1|4.4e-0960.66hypothetical protein ARALYDRAFT_486257 [Arabidopsis lyrata subsp. lyrata][more]
gi|593690208|ref|XP_007145705.1|7.6e-0962.30hypothetical protein PHAVU_007G261300g [Phaseolus vulgaris][more]
gi|729302470|ref|XP_010524691.1|9.9e-0960.66PREDICTED: uncharacterized protein LOC104802668 isoform X2 [Tarenaya hassleriana... [more]
Relationships

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa4G563700Csa4G563700gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
H0136354H0136354EST