CU170085 (transcribed_cluster) Cucumber (Chinese Long) v2

NameCU170085
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr3 : 6320862 .. 6321060 (+)
Sequence length201
The following sequences are available for this feature:

transcribed_cluster sequence

AATGCGGGTTTGTTCTTTGTAGATTTTGGGCCATTTCTTCGGAAGTCGGAGGATGTTCGAGTGTAAGGCTGGAAGGTATCGATTTCCACTGTTTTGATTGGATCTCTTTTGATCTGTTGAAGCTCTTCCCCTGCTTTCCCATGCCTTCCTTGAATTCCATTGATCTAACCACTTGGGTCTTTCTTCCAGATCATCTCCACC
BLAST of CU170085 vs. TrEMBL
Match: A0A0A0L5M1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G116810 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 6.8e-10
Identity = 30/31 (96.77%), Postives = 31/31 (100.00%), Query Frame = -1

Query: 106 GDDLEERPKWLDQWNSRKAWESRGRASTDQK 165
           GDDLEERPKWLDQWNSRKAWESRGRASTDQ+
Sbjct: 216 GDDLEERPKWLDQWNSRKAWESRGRASTDQR 246

Query: 166 199
           
Sbjct: 276 246

BLAST of CU170085 vs. TrEMBL
Match: A0A0A0L5M1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G116810 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 1.9e-04
Identity = 24/35 (68.57%), Postives = 27/35 (77.14%), Query Frame = -2

Query: 6   KRDPIKTVEIDTFQPYTRTSSDFRRNGPKSTKNKP 65
           +RDPIKTVEIDTFQPYTRTSS+FRR      +  P
Sbjct: 245 QRDPIKTVEIDTFQPYTRTSSNFRRMAQNLQRTNP 279

Query: 66  111
           
Sbjct: 305 279

BLAST of CU170085 vs. NCBI nr
Match: gi|778676613|ref|XP_004134281.2| (PREDICTED: protein IQ-DOMAIN 1 [Cucumis sativus])

HSP 1 Score: 68.2 bits (165), Expect = 6.4e-09
Identity = 30/31 (96.77%), Postives = 31/31 (100.00%), Query Frame = -1

Query: 106 GDDLEERPKWLDQWNSRKAWESRGRASTDQK 165
           GDDLEERPKWLDQWNSRKAWESRGRASTDQ+
Sbjct: 216 GDDLEERPKWLDQWNSRKAWESRGRASTDQR 246

Query: 166 199
           
Sbjct: 276 246

BLAST of CU170085 vs. NCBI nr
Match: gi|659074749|ref|XP_008437775.1| (PREDICTED: protein IQ-DOMAIN 1 [Cucumis melo])

HSP 1 Score: 66.6 bits (161), Expect = 1.9e-08
Identity = 29/31 (93.55%), Postives = 31/31 (100.00%), Query Frame = -1

Query: 106 GDDLEERPKWLDQWNSRKAWESRGRASTDQK 165
           GDDLEERPKWLDQWNSR+AWESRGRASTDQ+
Sbjct: 216 GDDLEERPKWLDQWNSRQAWESRGRASTDQR 246

Query: 166 199
           
Sbjct: 276 246

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0L5M1_CUCSA6.8e-1096.77Uncharacterized protein OS=Cucumis sativus GN=Csa_3G116810 PE=4 SV=1[more]
A0A0A0L5M1_CUCSA1.9e-0468.57Uncharacterized protein OS=Cucumis sativus GN=Csa_3G116810 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|778676613|ref|XP_004134281.2|6.4e-0996.77PREDICTED: protein IQ-DOMAIN 1 [Cucumis sativus][more]
gi|659074749|ref|XP_008437775.1|1.9e-0893.55PREDICTED: protein IQ-DOMAIN 1 [Cucumis melo][more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa3G116810Csa3G116810gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
H0134974H0134974EST