CU169975 (transcribed_cluster) Cucumber (Chinese Long) v2

Overview
NameCU169975
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr3 : 15198133 .. 15198385 (-)
Sequence length259
Genome Viewer
Sequences
The following sequences are available for this feature:

transcribed_cluster sequence

ACAAGAATTAAATGGCCATCCCTTCCAGGGTCCACTAACATCTGCGTAGGGGCCTTCTTTCAACTTTGACGTCACCCAACAAAGCTCAGCGAAATGGGGGTATCGCAGAATTTGATGACCAAAAGTAGATATTACTGAAATCAAGTTTGATTTCACTTTCATGGTTCTACTGCCAGGTAGTGGTGCAATTCTGAGAGAAGAAACATCAGGGGATTTCATTTCTCCATTGTGCTCGCTGGCTAGTTTTCTTTATCCTCCC
Homology
[Close]
BLAST of CU169975 vs. TrEMBL
Match: A0A0A0L9H9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G236020 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 1.1e-39
Identity = 79/82 (96.34%), Postives = 81/82 (98.78%), Query Frame = -2 

Query: 4    RKLASEHNGEMKSPDVSSLRIAPLPGSRTMKVKSNLISVISTFGHQILRYPHFAELCWVT 63
            ++ ASEHNGEMKSPDVSSLRIAPLPGSRTMKVKSNLISVISTFGHQILRYPHFAELCWVT
Sbjct: 1384 KETASEHNGEMKSPDVSSLRIAPLPGSRTMKVKSNLISVISTFGHQILRYPHFAELCWVT 1443

Query: 64   SKLKEGPYADVSGPWKGWPFNS 123
            SKLKEGPYADVSGPWKGWPFNS
Sbjct: 1444 SKLKEGPYADVSGPWKGWPFNS 1465

Query: 124   183
            
Sbjct: 1504  1465

Query: 184   243
            
Sbjct: 1564  1465

Query: 244   250
            
Sbjct: 1624  1465

[Close]
BLAST of CU169975 vs. TrEMBL
Match: V4UL74_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10007229mg PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 6.3e-24
Identity = 54/79 (68.35%), Postives = 64/79 (81.01%), Query Frame = -2 

Query: 4    ASEHNGEMKSPDVSSLRIAPLPGSRTMKVKSNLISVISTFGHQILRYPHFAELCWVTSKL 63
            A+EH  + + PD  S+R  P P +RT+K KS+L+  ISTFG+QILRYPHFAELCWVTSKL
Sbjct: 1378 ANEHEVKPQCPDDFSVRGPPPPNNRTLKGKSSLVLAISTFGNQILRYPHFAELCWVTSKL 1437

Query: 64   KEGPYADVSGPWKGWPFNS 123
            KEGP AD+SG WKGWPFNS
Sbjct: 1438 KEGPCADISGSWKGWPFNS 1456

Query: 124   183
            
Sbjct: 1498  1456

Query: 184   241
            
Sbjct: 1558  1456

[Close]
BLAST of CU169975 vs. TrEMBL
Match: M5X306_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000091mg PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 2.4e-23
Identity = 52/79 (65.82%), Postives = 62/79 (78.48%), Query Frame = -2 

Query: 4    ASEHNGEMKSPDVSSLRIAPLPGSRTMKVKSNLISVISTFGHQILRYPHFAELCWVTSKL 63
            A  +N   + PD S L+  P P +RT+K KS+L+  IS+FG+QILRYPHFAELCW TSKL
Sbjct: 1283 ADANNSVKQGPDESLLKAHPPPNNRTVKGKSSLLLAISSFGYQILRYPHFAELCWFTSKL 1342

Query: 64   KEGPYADVSGPWKGWPFNS 123
            KEGP AD+SGPWKGWPFNS
Sbjct: 1343 KEGPSADISGPWKGWPFNS 1361

Query: 124   183
            
Sbjct: 1403  1361

Query: 184   241
            
Sbjct: 1463  1361

[Close]
BLAST of CU169975 vs. TrEMBL
Match: F6H211_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0014g02080 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 4.1e-23
Identity = 51/80 (63.75%), Postives = 63/80 (78.75%), Query Frame = -2 

Query: 4    LASEHNGEMKSPDVSSLRIAPLPGSRTMKVKSNLISVISTFGHQILRYPHFAELCWVTSK 63
            LA+E     + P+ S  ++   P SRT+K KSNL+  ISTFG+Q+LRYPHFAELCWVTSK
Sbjct: 1336 LANEGEDRAQCPEESVAKVPSPPNSRTVKGKSNLLLAISTFGYQMLRYPHFAELCWVTSK 1395

Query: 64   LKEGPYADVSGPWKGWPFNS 123
            LK+GP AD++GPWKGWPFNS
Sbjct: 1396 LKDGPCADINGPWKGWPFNS 1415

Query: 124   183
            
Sbjct: 1456  1415

Query: 184   243
            
Sbjct: 1516  1415

[Close]
BLAST of CU169975 vs. TrEMBL
Match: A0A072VAP1_MEDTR (P-loop nucleoside triphosphate hydrolase superfamily protein, putative OS=Medicago truncatula GN=MTR_2g078630 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 3.4e-22
Identity = 52/78 (66.67%), Postives = 61/78 (78.21%), Query Frame = -2 

Query: 4   SEHNGEMKSPDVSSLRIAPLPGSRTMKVKSNLISVISTFGHQILRYPHFAELCWVTSKLK 63
           +   GE++ P+  SL   P P SR++K KSNL+  ISTFG+QIL YPHFAELCWVTSKLK
Sbjct: 748 ANEKGEVQFPE--SLTKVPQPNSRSVKGKSNLLMAISTFGYQILLYPHFAELCWVTSKLK 807

Query: 64  EGPYADVSGPWKGWPFNS 123
           EGP AD SGPW+GWPFNS
Sbjct: 808 EGPCADASGPWRGWPFNS 823

Query: 124  183
           
Sbjct: 868  823

Query: 184  238
           
Sbjct: 928  823

[Close]
BLAST of CU169975 vs. NCBI nr
Match: gi|659112413|ref|XP_008456208.1| (PREDICTED: uncharacterized protein LOC103496212 [Cucumis melo])

HSP 1 Score: 172.6 bits (436), Expect = 3.1e-40
Identity = 79/82 (96.34%), Postives = 81/82 (98.78%), Query Frame = -2 

Query: 4    RKLASEHNGEMKSPDVSSLRIAPLPGSRTMKVKSNLISVISTFGHQILRYPHFAELCWVT 63
            ++ ASEHNGEMKSPDVSSLRIAPLPGSRTMKVKSNLISVISTFGHQILRYPHFAELCWVT
Sbjct: 1396 KETASEHNGEMKSPDVSSLRIAPLPGSRTMKVKSNLISVISTFGHQILRYPHFAELCWVT 1455

Query: 64   SKLKEGPYADVSGPWKGWPFNS 123
            SKLKEGPYADVSGPWKGWPFNS
Sbjct: 1456 SKLKEGPYADVSGPWKGWPFNS 1477

Query: 124   183
            
Sbjct: 1516  1477

Query: 184   243
            
Sbjct: 1576  1477

Query: 244   250
            
Sbjct: 1636  1477

[Close]
BLAST of CU169975 vs. NCBI nr
Match: gi|778688579|ref|XP_011652783.1| (PREDICTED: uncharacterized protein LOC101208571 [Cucumis sativus])

HSP 1 Score: 172.6 bits (436), Expect = 3.1e-40
Identity = 79/82 (96.34%), Postives = 81/82 (98.78%), Query Frame = -2 

Query: 4    RKLASEHNGEMKSPDVSSLRIAPLPGSRTMKVKSNLISVISTFGHQILRYPHFAELCWVT 63
            ++ ASEHNGEMKSPDVSSLRIAPLPGSRTMKVKSNLISVISTFGHQILRYPHFAELCWVT
Sbjct: 1366 KETASEHNGEMKSPDVSSLRIAPLPGSRTMKVKSNLISVISTFGHQILRYPHFAELCWVT 1425

Query: 64   SKLKEGPYADVSGPWKGWPFNS 123
            SKLKEGPYADVSGPWKGWPFNS
Sbjct: 1426 SKLKEGPYADVSGPWKGWPFNS 1447

Query: 124   183
            
Sbjct: 1486  1447

Query: 184   243
            
Sbjct: 1546  1447

Query: 244   250
            
Sbjct: 1606  1447

[Close]
BLAST of CU169975 vs. NCBI nr
Match: gi|700202501|gb|KGN57634.1| (hypothetical protein Csa_3G236020 [Cucumis sativus])

HSP 1 Score: 172.6 bits (436), Expect = 3.1e-40
Identity = 79/82 (96.34%), Postives = 81/82 (98.78%), Query Frame = -2 

Query: 4    RKLASEHNGEMKSPDVSSLRIAPLPGSRTMKVKSNLISVISTFGHQILRYPHFAELCWVT 63
            ++ ASEHNGEMKSPDVSSLRIAPLPGSRTMKVKSNLISVISTFGHQILRYPHFAELCWVT
Sbjct: 1384 KETASEHNGEMKSPDVSSLRIAPLPGSRTMKVKSNLISVISTFGHQILRYPHFAELCWVT 1443

Query: 64   SKLKEGPYADVSGPWKGWPFNS 123
            SKLKEGPYADVSGPWKGWPFNS
Sbjct: 1444 SKLKEGPYADVSGPWKGWPFNS 1465

Query: 124   183
            
Sbjct: 1504  1465

Query: 184   243
            
Sbjct: 1564  1465

Query: 244   250
            
Sbjct: 1624  1465

[Close]
BLAST of CU169975 vs. NCBI nr
Match: gi|567919528|ref|XP_006451770.1| (hypothetical protein CICLE_v10007229mg [Citrus clementina])

HSP 1 Score: 119.8 bits (299), Expect = 2.4e-24
Identity = 54/79 (68.35%), Postives = 64/79 (81.01%), Query Frame = -2 

Query: 4    ASEHNGEMKSPDVSSLRIAPLPGSRTMKVKSNLISVISTFGHQILRYPHFAELCWVTSKL 63
            A+EH  + + PD  S+R  P P +RT+K KS+L+  ISTFG+QILRYPHFAELCWVTSKL
Sbjct: 1378 ANEHEVKPQCPDDFSVRGPPPPNNRTLKGKSSLVLAISTFGNQILRYPHFAELCWVTSKL 1437

Query: 64   KEGPYADVSGPWKGWPFNS 123
            KEGP AD+SG WKGWPFNS
Sbjct: 1438 KEGPCADISGSWKGWPFNS 1456

Query: 124   183
            
Sbjct: 1498  1456

Query: 184   241
            
Sbjct: 1558  1456

[Close]
BLAST of CU169975 vs. NCBI nr
Match: gi|568820638|ref|XP_006464816.1| (PREDICTED: uncharacterized protein LOC102619535 isoform X1 [Citrus sinensis])

HSP 1 Score: 119.8 bits (299), Expect = 2.4e-24
Identity = 54/79 (68.35%), Postives = 64/79 (81.01%), Query Frame = -2 

Query: 4    ASEHNGEMKSPDVSSLRIAPLPGSRTMKVKSNLISVISTFGHQILRYPHFAELCWVTSKL 63
            A+EH  + + PD  S+R  P P +RT+K KS+L+  ISTFG+QILRYPHFAELCWVTSKL
Sbjct: 1509 ANEHEVKPQCPDDFSVRGPPPPNNRTLKGKSSLVLAISTFGNQILRYPHFAELCWVTSKL 1568

Query: 64   KEGPYADVSGPWKGWPFNS 123
            KEGP AD+SG WKGWPFNS
Sbjct: 1569 KEGPCADISGSWKGWPFNS 1587

Query: 124   183
            
Sbjct: 1629  1587

Query: 184   241
            
Sbjct: 1689  1587

The following BLAST results are available for this feature:
BLAST of CU169975 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L9H9_CUCSA1.1e-3996.34Uncharacterized protein OS=Cucumis sativus GN=Csa_3G236020 PE=4 SV=1[more]
V4UL74_9ROSI6.3e-2468.35Uncharacterized protein OS=Citrus clementina GN=CICLE_v10007229mg PE=4 SV=1[more]
M5X306_PRUPE2.4e-2365.82Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000091mg PE=4 SV=1[more]
F6H211_VITVI4.1e-2363.75Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0014g02080 PE=4 SV=... [more]
A0A072VAP1_MEDTR3.4e-2266.67P-loop nucleoside triphosphate hydrolase superfamily protein, putative OS=Medica... [more]
BLAST of CU169975 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659112413|ref|XP_008456208.1|3.1e-4096.34PREDICTED: uncharacterized protein LOC103496212 [Cucumis melo][more]
gi|778688579|ref|XP_011652783.1|3.1e-4096.34PREDICTED: uncharacterized protein LOC101208571 [Cucumis sativus][more]
gi|700202501|gb|KGN57634.1|3.1e-4096.34hypothetical protein Csa_3G236020 [Cucumis sativus][more]
gi|567919528|ref|XP_006451770.1|2.4e-2468.35hypothetical protein CICLE_v10007229mg [Citrus clementina][more]
gi|568820638|ref|XP_006464816.1|2.4e-2468.35PREDICTED: uncharacterized protein LOC102619535 isoform X1 [Citrus sinensis][more]
Relationships

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa3G236020Csa3G236020gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
H0134183H0134183EST