CU169901 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU169901
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr3 : 32615427 .. 32617161 (+)
Sequence length	257

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

GATCACCTGAGACCCATTTTGCATTTTTGTGTCAAACCCAAAACCAGCTACATTAGCAGCTTCAGTGAGAGCCATTCTCCACCTACGAACTTTATCAATATCCTTACCCTTTTCATGCTTAACAAAAGCCTCTTCAAATTCACCCTTTTGCTTCCTCACACATGAAGGATCCACATTATAAAATCTGGCAAAACCATTTGTCTCAAAGTCCTTCTACACTCCATGATCTTACCACTCCTCCAAACACCATCCCGACT

Library


Library category	ESTs
hermaphrodite flower library	1

Homology

[Close]

BLAST of CU169901 vs. Swiss-Prot
Match: RPS6C_ARATH (Disease resistance protein RPS6 OS=Arabidopsis thaliana GN=RPS6 PE=1 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 6.8e-08
Identity = 33/85 (38.82%), Postives = 44/85 (51.76%), Query Frame = -3


Query: 4   SGWCLEEW*DH-GV*KDFETNGFARFYNVDPSCVRKQKGEFEEAFVKHEKGKDIDKVRRW 63
           S WCL E  +     K+F       FYN+DPS VRKQ G+F + F K  + K +D+  RW
Sbjct: 81  SSWCLNELLEIVKCKKEFGQLVIPIFYNLDPSHVRKQTGDFGKIFEKTCRNKTVDEKIRW 140

Query: 64  RMALTEAANVAGFGFDTKMQNGSQV 123
           + ALT+ AN+ G+   T     S +
Sbjct: 141 KEALTDVANILGYHIVTWDNEASMI 165

Query: 124  183
           
Sbjct: 201  165

Query: 184  243
           
Sbjct: 261  165

Query: 244  256
           
Sbjct: 321  165

[Close]

BLAST of CU169901 vs. Swiss-Prot
Match: RPS6R_ARATH (Disease resistance protein RPS6 OS=Arabidopsis thaliana GN=RPS6 PE=1 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 6.8e-08
Identity = 33/85 (38.82%), Postives = 44/85 (51.76%), Query Frame = -3


Query: 4   SGWCLEEW*DH-GV*KDFETNGFARFYNVDPSCVRKQKGEFEEAFVKHEKGKDIDKVRRW 63
           S WCL E  +     K+F       FYN+DPS VRKQ G+F + F K  + K +D+  RW
Sbjct: 81  SSWCLNELLEIVKCKKEFGQLVIPIFYNLDPSHVRKQTGDFGKIFEKTCRNKTVDEKIRW 140

Query: 64  RMALTEAANVAGFGFDTKMQNGSQV 123
           + ALT+ AN+ G+   T     S +
Sbjct: 141 KEALTDVANILGYHIVTWDNEASMI 165

Query: 124  183
           
Sbjct: 201  165

Query: 184  243
           
Sbjct: 261  165

Query: 244  256
           
Sbjct: 321  165

[Close]

BLAST of CU169901 vs. Swiss-Prot
Match: TAO1_ARATH (Disease resistance protein TAO1 OS=Arabidopsis thaliana GN=TAO1 PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 8.9e-08
Identity = 34/74 (45.95%), Postives = 43/74 (58.11%), Query Frame = -3


Query: 43  SGWCLEEW*DHGV*KDFETNG---FARFYNVDPSCVRKQKGEFEEAFVKHEKGKDIDKVR 102
           S WCL+E  +  + K  E  G      FY+VDPS VRKQKG+F + F K   G+  + V+
Sbjct: 107 SKWCLDELVE--IMKCREELGQTVMTVFYDVDPSDVRKQKGDFGKVFKKTCVGRPEEMVQ 166

Query: 103 RWRMALTEAANVAG 162
           RW+ ALT AAN+ G
Sbjct: 167 RWKQALTSAANILG 178

Query: 163  222
           
Sbjct: 227  178

Query: 223  256
           
Sbjct: 287  178

[Close]

BLAST of CU169901 vs. Swiss-Prot
Match: RPP1_ARATH (Probable disease resistance protein RPP1 OS=Arabidopsis thaliana GN=RPP1 PE=2 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.5e-07
Identity = 31/75 (41.33%), Postives = 43/75 (57.33%), Query Frame = -3


Query: 40  SGWCLEEW*DHGV*KDFETNG---FARFYNVDPSCVRKQKGEFEEAFVKHEKGKDIDKVR 99
           S WCL+E  +  + K  +  G      FY VDP+ ++KQ GEF +AF K  +GK  ++V 
Sbjct: 165 SSWCLDELAE--IMKCRQMVGQIVMTIFYEVDPTDIKKQTGEFGKAFTKTCRGKPKEQVE 224

Query: 100 RWRMALTEAANVAGF 159
           RWR AL + A +AG+
Sbjct: 225 RWRKALEDVATIAGY 237

Query: 160  219
           
Sbjct: 285  237

Query: 220  256
           
Sbjct: 345  237

[Close]

BLAST of CU169901 vs. Swiss-Prot
Match: TMVRN_NICGU (TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 4.4e-07
Identity = 33/74 (44.59%), Postives = 41/74 (55.41%), Query Frame = -3


Query: 43  SGWCLEEW*DHGV*KD-FETNGFARFYNVDPSCVRKQKGEFEEAFVKHEK--GKDIDKVR 102
           S WCL E       K  F+      FY+VDPS VR QK  F +AF +HE     D++ ++
Sbjct: 80  SRWCLNELVKIMECKTRFKQTVIPIFYDVDPSHVRNQKESFAKAFEEHETKYKDDVEGIQ 139

Query: 103 RWRMALTEAANVAG 162
           RWR+AL EAAN+ G
Sbjct: 140 RWRIALNEAANLKG 153

Query: 163  222
           
Sbjct: 200  153

Query: 223  256
           
Sbjct: 260  153

[Close]

BLAST of CU169901 vs. TrEMBL
Match: A0A0A0LF83_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G824940 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 1.7e-21
Identity = 61/87 (70.11%), Postives = 63/87 (72.41%), Query Frame = -3


Query: 13  SGWCLEEW*DHGV*KDFETNGFAR------FYNVDPSCVRKQKGEFEEAFVKHEKGKDID 72
           SGWCLEE     + K  E     R      FYNVDPSCVRKQKGEFEEAFVKHEKGKDID
Sbjct: 122 SGWCLEE-----LVKIMECRRTLRQMVLPVFYNVDPSCVRKQKGEFEEAFVKHEKGKDID 181

Query: 73  KVRRWRMALTEAANVAGFGFDTKMQNG 132
           KVRRWRMALTEAANVAG G  T+  NG
Sbjct: 182 KVRRWRMALTEAANVAGLGL-TQNANG 202

Query: 133  192
           
Sbjct: 242  202

Query: 193  252
           
Sbjct: 302  202

Query: 253  256
           
Sbjct: 362  202

[Close]

BLAST of CU169901 vs. TrEMBL
Match: A0A0A0LG09_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G824920 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.1e-12
Identity = 47/80 (58.75%), Postives = 54/80 (67.50%), Query Frame = -3


Query: 40  SGWCLEEW*DHGV*KDFETNGFAR------FYNVDPSCVRKQKGEFEEAFVKHEKG--KD 99
           SGWCLEE     + K  E     R      FYNVDPS VRKQK EFEEAFVKHE    +D
Sbjct: 82  SGWCLEE-----LVKIMECRRTLRQLVFPIFYNVDPSYVRKQKDEFEEAFVKHEVRYFRD 141

Query: 100 IDKVRRWRMALTEAANVAGF 159
           ID+V +WRMALTEAAN++G+
Sbjct: 142 IDRVLKWRMALTEAANLSGW 156

Query: 160  219
           
Sbjct: 202  156

Query: 220  256
           
Sbjct: 262  156

[Close]

BLAST of CU169901 vs. TrEMBL
Match: A0A0D2SUG4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G322300 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 2.4e-12
Identity = 40/72 (55.56%), Postives = 50/72 (69.44%), Query Frame = -3


Query: 40  SGWCLEEW*DHGV*KDFETNGFARFYNVDPSCVRKQKGEFEEAFVKHEKGKDIDKVRRWR 99
           SGWCL+E  +    K  +   F  FY+VDPS +RKQKG+ EEAF +HEK  D DKVRRWR
Sbjct: 84  SGWCLDELSEIVKQKKDKGRVFPVFYDVDPSDLRKQKGKVEEAFAEHEKRYDEDKVRRWR 143

Query: 100 MALTEAANVAGF 159
            ALT+ AN+ G+
Sbjct: 144 NALTQVANIKGW 155

Query: 160  219
           
Sbjct: 204  155

Query: 220  256
           
Sbjct: 264  155

[Close]

BLAST of CU169901 vs. TrEMBL
Match: M5VIJ1_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa025472mg PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.0e-10
Identity = 44/83 (53.01%), Postives = 55/83 (66.27%), Query Frame = -3


Query: 19  SGWCLEEW*DHGV*KDFETNG--FARFYNVDPSCVRKQKGEFEEAFVKHEK--GKDIDKV 78
           S WCL+E     + +  ++NG     FYNVDPS VRKQ G F +AF +HEK   +DIDKV
Sbjct: 93  SSWCLDEL--TKILQCMKSNGTLLPVFYNVDPSDVRKQSGSFADAFAEHEKRFREDIDKV 152

Query: 79  RRWRMALTEAANVAGFGFDTKMQ 138
           +RWR ALTE AN+A  G D+K Q
Sbjct: 153 KRWRDALTEVANLA--GIDSKNQ 171

Query: 139  198
           
Sbjct: 213  171

Query: 199  256
           
Sbjct: 273  171

[Close]

BLAST of CU169901 vs. TrEMBL
Match: A0A0U2THS9_GOSAR (Toll interleukin receptor-like protein (Fragment) OS=Gossypium arboreum PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.3e-10
Identity = 38/82 (46.34%), Postives = 55/82 (67.07%), Query Frame = -3


Query: 19  SGWCLEEW*DHGV*KDFETNG---FARFYNVDPSCVRKQKGEFEEAFVKHEKGKDIDKVR 78
           SGWCL+E  +  + K     G   F  FY+VDPS +RKQKG+ EEAF +H+K  D DK++
Sbjct: 50  SGWCLDELSE--IVKQKNDKGYKVFPVFYDVDPSDLRKQKGKVEEAFAEHKKRYDEDKLQ 109

Query: 79  RWRMALTEAANVAGFGFDTKMQ 138
           RWR ALT+ AN+ G+  + +++
Sbjct: 110 RWRNALTQVANIKGWHLNHRLR 129

Query: 139  198
           
Sbjct: 170  129

Query: 199  256
           
Sbjct: 230  129

[Close]

BLAST of CU169901 vs. NCBI nr
Match: gi|778688906|ref|XP_011652862.1| (PREDICTED: TMV resistance protein N-like [Cucumis sativus])

HSP 1 Score: 112.8 bits (281), Expect = 2.9e-22
Identity = 61/87 (70.11%), Postives = 63/87 (72.41%), Query Frame = -3


Query: 13  SGWCLEEW*DHGV*KDFETNGFAR------FYNVDPSCVRKQKGEFEEAFVKHEKGKDID 72
           SGWCLEE     + K  E     R      FYNVDPSCVRKQKGEFEEAFVKHEKGKDID
Sbjct: 82  SGWCLEE-----LVKIMECRRTLRQMVLPVFYNVDPSCVRKQKGEFEEAFVKHEKGKDID 141

Query: 73  KVRRWRMALTEAANVAGFGFDTKMQNG 132
           KVRRWRMALTEAANVAG G  T+  NG
Sbjct: 142 KVRRWRMALTEAANVAGLGL-TQNANG 162

Query: 133  192
           
Sbjct: 202  162

Query: 193  252
           
Sbjct: 262  162

Query: 253  256
           
Sbjct: 322  162

[Close]

BLAST of CU169901 vs. NCBI nr
Match: gi|700204416|gb|KGN59549.1| (hypothetical protein Csa_3G824940 [Cucumis sativus])

HSP 1 Score: 112.8 bits (281), Expect = 2.9e-22
Identity = 61/87 (70.11%), Postives = 63/87 (72.41%), Query Frame = -3


Query: 13  SGWCLEEW*DHGV*KDFETNGFAR------FYNVDPSCVRKQKGEFEEAFVKHEKGKDID 72
           SGWCLEE     + K  E     R      FYNVDPSCVRKQKGEFEEAFVKHEKGKDID
Sbjct: 122 SGWCLEE-----LVKIMECRRTLRQMVLPVFYNVDPSCVRKQKGEFEEAFVKHEKGKDID 181

Query: 73  KVRRWRMALTEAANVAGFGFDTKMQNG 132
           KVRRWRMALTEAANVAG G  T+  NG
Sbjct: 182 KVRRWRMALTEAANVAGLGL-TQNANG 202

Query: 133  192
           
Sbjct: 242  202

Query: 193  252
           
Sbjct: 302  202

Query: 253  256
           
Sbjct: 362  202

[Close]

BLAST of CU169901 vs. NCBI nr
Match: gi|659085381|ref|XP_008443388.1| (PREDICTED: TMV resistance protein N [Cucumis melo])

HSP 1 Score: 85.9 bits (211), Expect = 3.7e-14
Identity = 48/80 (60.00%), Postives = 54/80 (67.50%), Query Frame = -3


Query: 40  SGWCLEEW*DHGV*KDFETNGFAR------FYNVDPSCVRKQKGEFEEAFVKHEKG--KD 99
           SGWCLEE     + K  E     R      FYNVDPS VR QKGEFEEAFVKHE    +D
Sbjct: 82  SGWCLEE-----LVKIMECRRTLRQLVFPVFYNVDPSSVRNQKGEFEEAFVKHEVRYFRD 141

Query: 100 IDKVRRWRMALTEAANVAGF 159
           IDKV +WRMALTEAAN++G+
Sbjct: 142 IDKVLKWRMALTEAANLSGW 156

Query: 160  219
           
Sbjct: 202  156

Query: 220  256
           
Sbjct: 262  156

[Close]

BLAST of CU169901 vs. NCBI nr
Match: gi|700204414|gb|KGN59547.1| (hypothetical protein Csa_3G824920 [Cucumis sativus])

HSP 1 Score: 83.6 bits (205), Expect = 1.9e-13
Identity = 47/80 (58.75%), Postives = 54/80 (67.50%), Query Frame = -3


Query: 40  SGWCLEEW*DHGV*KDFETNGFAR------FYNVDPSCVRKQKGEFEEAFVKHEKG--KD 99
           SGWCLEE     + K  E     R      FYNVDPS VRKQK EFEEAFVKHE    +D
Sbjct: 82  SGWCLEE-----LVKIMECRRTLRQLVFPIFYNVDPSYVRKQKDEFEEAFVKHEVRYFRD 141

Query: 100 IDKVRRWRMALTEAANVAGF 159
           ID+V +WRMALTEAAN++G+
Sbjct: 142 IDRVLKWRMALTEAANLSGW 156

Query: 160  219
           
Sbjct: 202  156

Query: 220  256
           
Sbjct: 262  156

[Close]

BLAST of CU169901 vs. NCBI nr
Match: gi|763778578|gb|KJB45701.1| (hypothetical protein B456_007G322300 [Gossypium raimondii])

HSP 1 Score: 82.4 bits (202), Expect = 4.1e-13
Identity = 40/72 (55.56%), Postives = 50/72 (69.44%), Query Frame = -3


Query: 40  SGWCLEEW*DHGV*KDFETNGFARFYNVDPSCVRKQKGEFEEAFVKHEKGKDIDKVRRWR 99
           SGWCL+E  +    K  +   F  FY+VDPS +RKQKG+ EEAF +HEK  D DKVRRWR
Sbjct: 84  SGWCLDELSEIVKQKKDKGRVFPVFYDVDPSDLRKQKGKVEEAFAEHEKRYDEDKVRRWR 143

Query: 100 MALTEAANVAGF 159
            ALT+ AN+ G+
Sbjct: 144 NALTQVANIKGW 155

Query: 160  219
           
Sbjct: 204  155

Query: 220  256
           
Sbjct: 264  155

The following BLAST results are available for this feature:

BLAST of CU169901 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RPS6C_ARATH	6.8e-08	38.82	Disease resistance protein RPS6 OS=Arabidopsis thaliana GN=RPS6 PE=1 SV=1	[more]
RPS6R_ARATH	6.8e-08	38.82	Disease resistance protein RPS6 OS=Arabidopsis thaliana GN=RPS6 PE=1 SV=1	[more]
TAO1_ARATH	8.9e-08	45.95	Disease resistance protein TAO1 OS=Arabidopsis thaliana GN=TAO1 PE=3 SV=1	[more]
RPP1_ARATH	1.5e-07	41.33	Probable disease resistance protein RPP1 OS=Arabidopsis thaliana GN=RPP1 PE=2 SV...	[more]
TMVRN_NICGU	4.4e-07	44.59	TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1	[more]

BLAST of CU169901 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LF83_CUCSA	1.7e-21	70.11	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G824940 PE=4 SV=1	[more]
A0A0A0LG09_CUCSA	1.1e-12	58.75	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G824920 PE=4 SV=1	[more]
A0A0D2SUG4_GOSRA	2.4e-12	55.56	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G322300 PE=4 SV=1	[more]
M5VIJ1_PRUPE	1.0e-10	53.01	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa025472mg PE=4 S...	[more]
A0A0U2THS9_GOSAR	1.3e-10	46.34	Toll interleukin receptor-like protein (Fragment) OS=Gossypium arboreum PE=4 SV=...	[more]

BLAST of CU169901 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778688906\|ref\|XP_011652862.1\|	2.9e-22	70.11	PREDICTED: TMV resistance protein N-like [Cucumis sativus]	[more]
gi\|700204416\|gb\|KGN59549.1\|	2.9e-22	70.11	hypothetical protein Csa_3G824940 [Cucumis sativus]	[more]
gi\|659085381\|ref\|XP_008443388.1\|	3.7e-14	60.00	PREDICTED: TMV resistance protein N [Cucumis melo]	[more]
gi\|700204414\|gb\|KGN59547.1\|	1.9e-13	58.75	hypothetical protein Csa_3G824920 [Cucumis sativus]	[more]
gi\|763778578\|gb\|KJB45701.1\|	4.1e-13	55.56	hypothetical protein B456_007G322300 [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR000157	TIR_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **Biological Process**
Term	Definition
GO:0007165	signal transduction

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007165	signal transduction
molecular_function	GO:0005515	protein binding

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa3G824940	Csa3G824940	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
H0133625	H0133625	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000157	Toll/interleukin-1 receptor homology (TIR) domain	PFAM	PF01582	TIR	coord: 10..77 score: 9.5
IPR000157	Toll/interleukin-1 receptor homology (TIR) domain	unknown	SSF52200	Toll/Interleukin receptor TIR domain	coord: 10..73 score: 7.9
None	No IPR available	PANTHER	PTHR11017	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	coord: 10..77 score: 1.6