CU169596 (transcribed_cluster) Cucumber (Chinese Long) v2

Overview
NameCU169596
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 1694903 .. 1699544 (+)
Sequence length256
Genome Viewer
Sequences
The following sequences are available for this feature:

transcribed_cluster sequence

GTTTGTTGCAAATTCACATGCTACCTTGCAACCAATGAAGCCCGAGCACGTCCAACCGATTCAGGCGGCGGAGATAAAGTATGTAGGAGTCCGGAAACTTGACTGAGAGAGGGGCATGTGAAGTACAAGGGAGGAGGAGGTAGAGGTTGAAGGGGCGTAAGAAGGACCGATGGAGGCAATCTGTGAGAGAAAGGAGGAGGGGAAGCGGAGACGGATCCCAGCGGTGCAGCAAACATTGGAGCGTCGAGAGTTGAGA
Homology
[Close]
BLAST of CU169596 vs. TrEMBL
Match: A0A0A0KAI8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014690 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.8e-07
Identity = 39/78 (50.00%), Postives = 40/78 (51.28%), Query Frame = -3 

Query: 3   MFAAPLGSVSASPPPFSHRXXXXXXXXXXXXXXXXXXYFTCPSLSQVSGLLHTLSPPPES 62
           MFAAPLGSVSASP  F  +                      P     SGLLHTLSPPPES
Sbjct: 1   MFAAPLGSVSASPSSFLSQIASIGPSYAPSTSTSSSLVLHMPLSQSSSGLLHTLSPPPES 60

Query: 63  VGRARASLVAR*HVNLQQ 122
           VGRAR       HVNLQQ
Sbjct: 61  VGRARV------HVNLQQ 72

Query: 123  182
           
Sbjct: 121  72

Query: 183  237
           
Sbjct: 181  72

[Close]
BLAST of CU169596 vs. NCBI nr
Match: gi|778709753|ref|XP_011656450.1| (PREDICTED: uncharacterized protein LOC101215106 isoform X2 [Cucumis sativus])

HSP 1 Score: 63.2 bits (152), Expect = 2.6e-07
Identity = 39/78 (50.00%), Postives = 40/78 (51.28%), Query Frame = -3 

Query: 3   MFAAPLGSVSASPPPFSHRXXXXXXXXXXXXXXXXXXYFTCPSLSQVSGLLHTLSPPPES 62
           MFAAPLGSVSASP  F  +                      P     SGLLHTLSPPPES
Sbjct: 1   MFAAPLGSVSASPSSFLSQIASIGPSYAPSTSTSSSLVLHMPLSQSSSGLLHTLSPPPES 60

Query: 63  VGRARASLVAR*HVNLQQ 122
           VGRAR       HVNLQQ
Sbjct: 61  VGRARV------HVNLQQ 72

Query: 123  182
           
Sbjct: 121  72

Query: 183  237
           
Sbjct: 181  72

[Close]
BLAST of CU169596 vs. NCBI nr
Match: gi|449441232|ref|XP_004138386.1| (PREDICTED: pheophytinase, chloroplastic isoform X1 [Cucumis sativus])

HSP 1 Score: 63.2 bits (152), Expect = 2.6e-07
Identity = 39/78 (50.00%), Postives = 40/78 (51.28%), Query Frame = -3 

Query: 3   MFAAPLGSVSASPPPFSHRXXXXXXXXXXXXXXXXXXYFTCPSLSQVSGLLHTLSPPPES 62
           MFAAPLGSVSASP  F  +                      P     SGLLHTLSPPPES
Sbjct: 1   MFAAPLGSVSASPSSFLSQIASIGPSYAPSTSTSSSLVLHMPLSQSSSGLLHTLSPPPES 60

Query: 63  VGRARASLVAR*HVNLQQ 122
           VGRAR       HVNLQQ
Sbjct: 61  VGRARV------HVNLQQ 72

Query: 123  182
           
Sbjct: 121  72

Query: 183  237
           
Sbjct: 181  72

The following BLAST results are available for this feature:
BLAST of CU169596 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KAI8_CUCSA1.8e-0750.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014690 PE=4 SV=1[more]
BLAST of CU169596 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778709753|ref|XP_011656450.1|2.6e-0750.00PREDICTED: uncharacterized protein LOC101215106 isoform X2 [Cucumis sativus][more]
gi|449441232|ref|XP_004138386.1|2.6e-0750.00PREDICTED: pheophytinase, chloroplastic isoform X1 [Cucumis sativus][more]
Relationships

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa6G014690Csa6G014690gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
H0131011H0131011EST