CU168342 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU168342
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Plant protein of unknown function (DUF247)
Location	Chr6 : 6122819 .. 6123071 (-)
Sequence length	252

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

TGAGTTTTGAAAAAGGCGTGTTGAAACTGCCACTTCTAATTGTAGATGATAATACCGAAACAAATTTACTAAATGTGATGGCATTTGAGAAACTCCATGACGTTGGAAGTCAAGTGACATCTTTTGTAGTGTTGATGAATAATTTGATCGACATTGATAAAGATGTCGAGCTATTGTCGAATGATAATATAATAGCCAATGCACTTGGGAACAATGAAGAAGCGGCGAATTTGTTTAGTGTACTTGGGAAAG

Library


Library category	ESTs
hermaphrodite flower library	1

Homology

[Close]

BLAST of CU168342 vs. TrEMBL
Match: A0A0A0K9F5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G089270 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 2.1e-24
Identity = 64/83 (77.11%), Postives = 65/83 (78.31%), Query Frame = 3


Query: 3   SFEKGVLKLPLLIVDDNTETNLLNVMAFEKLHDVGSQVTSFVVLMNNLIDIDKDVELLSN 62
           SFEKGVL LP LIVDDNT+TNLLNVMAFEKLHDVGSQVTSFVVLMNNLIDIDKDVELLSN
Sbjct: 256 SFEKGVLTLPSLIVDDNTKTNLLNVMAFEKLHDVGSQVTSFVVLMNNLIDIDKDVELLSN 315

Query: 63  DXXXXXXXXXXXXXXXXFSVLGK 122
           D                FSVLGK
Sbjct: 316 DNIIANALGNNEEAANLFSVLGK 338

Query: 123  182
           
Sbjct: 376  338

Query: 183  242
           
Sbjct: 436  338

Query: 243  252
           
Sbjct: 496  338

[Close]

BLAST of CU168342 vs. TrEMBL
Match: A0A0A0KAA3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G091270 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 5.9e-19
Identity = 54/61 (88.52%), Postives = 57/61 (93.44%), Query Frame = 3


Query: 3   SFEKGVLKLPLLIVDDNTETNLLNVMAFEKLHD-VGSQVTSFVVLMNNLIDIDKDVELLS 62
           SFEKGVL LP LIVDDNT+TNLLNVMAFEKLHD VGSQVTSFVVLM+NLI IDKDV+LLS
Sbjct: 533 SFEKGVLTLPSLIVDDNTKTNLLNVMAFEKLHDEVGSQVTSFVVLMHNLIRIDKDVQLLS 592

Query: 63  N 122
           N
Sbjct: 593 N 593

Query: 123  182
           
Sbjct: 653  593

[Close]

BLAST of CU168342 vs. TrEMBL
Match: A0A0A0KAA3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G091270 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 2.7e-08
Identity = 37/61 (60.66%), Postives = 47/61 (77.05%), Query Frame = 3


Query: 6   FEKGVLKLPLLIVDDN-TETNLLNVMAFEKLH-DVGSQVTSFVVLMNNLIDIDKDVELLS 65
           F++ VL+LP L +DD  TE  L+N+MAFEKLH  V  QVTSFVVLM NLI ++KDV LL+
Sbjct: 290 FKQRVLRLPSLAIDDILTEPTLINIMAFEKLHVGVERQVTSFVVLMKNLIGMEKDVSLLA 349

Query: 66  N 125
           +
Sbjct: 350 S 350

Query: 126  183
           
Sbjct: 410  350

HSP 2 Score: 92.8 bits (229), Expect = 2.1e-16
Identity = 53/83 (63.86%), Postives = 59/83 (71.08%), Query Frame = 3


Query: 6   FEKGVLKLPLLIVDDNTETNLLNVMAFEKLH-DVGSQVTSFVVLMNNLIDIDKDVELLSN 65
           F+ GVL+LP L VDD+TET LLNVMAFEKLH +V S VTSFVVLMNNLIDIDKDVELLS 
Sbjct: 312 FKNGVLELPHLTVDDDTETKLLNVMAFEKLHGNVRSYVTSFVVLMNNLIDIDKDVELLSE 371

Query: 66  DXXXXXXXXXXXXXXXXFSVLGK 125
           +                F+VLGK
Sbjct: 372 NKIIDNALGNDEDAAKLFTVLGK 394

Query: 126  185
           
Sbjct: 432  394

Query: 186  245
           
Sbjct: 492  394

Query: 246  252
           
Sbjct: 552  394

[Close]

BLAST of CU168342 vs. TrEMBL
Match: A5AFY5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_031339 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.9e-09
Identity = 34/59 (57.63%), Postives = 47/59 (79.66%), Query Frame = 3


Query: 3   SFEKGVLKLPLLIVDDNTETNLLNVMAFEKLH-DVGSQVTSFVVLMNNLIDIDKDVELL 62
           SF+ GVLKLP+++VDD TE+  LN++AFE+LH   G++VTSF+  M+N+ID  KDV LL
Sbjct: 275 SFKGGVLKLPVIVVDDTTESMFLNLIAFERLHVGAGNEVTSFIFFMDNIIDNAKDVXLL 333

Query: 63   122
           
Sbjct: 335  333

Query: 123  177
           
Sbjct: 395  333

[Close]

BLAST of CU168342 vs. TrEMBL
Match: M1C2E5_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400022626 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 2.5e-09
Identity = 33/59 (55.93%), Postives = 46/59 (77.97%), Query Frame = 3


Query: 3   SFEKGVLKLPLLIVDDNTETNLLNVMAFEKLH-DVGSQVTSFVVLMNNLIDIDKDVELL 62
           SF  G+LKLPL++VDD TE+  LN++AFE+LH   G++VTS++  M+N+ID  KDV LL
Sbjct: 302 SFHSGILKLPLIVVDDATESMFLNLIAFERLHVGAGNEVTSYIFFMDNIIDNAKDVSLL 360

Query: 63   122
           
Sbjct: 362  360

Query: 123  177
           
Sbjct: 422  360

[Close]

BLAST of CU168342 vs. NCBI nr
Match: gi|778711703|ref|XP_011656783.1| (PREDICTED: UPF0481 protein At3g47200-like [Cucumis sativus])

HSP 1 Score: 118.6 bits (296), Expect = 5.1e-24
Identity = 64/83 (77.11%), Postives = 65/83 (78.31%), Query Frame = 3


Query: 3   SFEKGVLKLPLLIVDDNTETNLLNVMAFEKLHDVGSQVTSFVVLMNNLIDIDKDVELLSN 62
           SFEKGVL LP LIVDDNT+TNLLNVMAFEKLHDVGSQVTSFVVLMNNLIDIDKDVELLSN
Sbjct: 61  SFEKGVLTLPSLIVDDNTKTNLLNVMAFEKLHDVGSQVTSFVVLMNNLIDIDKDVELLSN 120

Query: 63  DXXXXXXXXXXXXXXXXFSVLGK 122
           D                FSVLGK
Sbjct: 121 DNIIANALGNNEEAANLFSVLGK 143

Query: 123  182
           
Sbjct: 181  143

Query: 183  242
           
Sbjct: 241  143

Query: 243  252
           
Sbjct: 301  143

[Close]

BLAST of CU168342 vs. NCBI nr
Match: gi|700191196|gb|KGN46400.1| (hypothetical protein Csa_6G089270 [Cucumis sativus])

HSP 1 Score: 118.6 bits (296), Expect = 5.1e-24
Identity = 64/83 (77.11%), Postives = 65/83 (78.31%), Query Frame = 3


Query: 3   SFEKGVLKLPLLIVDDNTETNLLNVMAFEKLHDVGSQVTSFVVLMNNLIDIDKDVELLSN 62
           SFEKGVL LP LIVDDNT+TNLLNVMAFEKLHDVGSQVTSFVVLMNNLIDIDKDVELLSN
Sbjct: 256 SFEKGVLTLPSLIVDDNTKTNLLNVMAFEKLHDVGSQVTSFVVLMNNLIDIDKDVELLSN 315

Query: 63  DXXXXXXXXXXXXXXXXFSVLGK 122
           D                FSVLGK
Sbjct: 316 DNIIANALGNNEEAANLFSVLGK 338

Query: 123  182
           
Sbjct: 376  338

Query: 183  242
           
Sbjct: 436  338

Query: 243  252
           
Sbjct: 496  338

[Close]

BLAST of CU168342 vs. NCBI nr
Match: gi|700191199|gb|KGN46403.1| (hypothetical protein Csa_6G091270 [Cucumis sativus])

HSP 1 Score: 100.1 bits (248), Expect = 1.9e-18
Identity = 54/61 (88.52%), Postives = 57/61 (93.44%), Query Frame = 3


Query: 3   SFEKGVLKLPLLIVDDNTETNLLNVMAFEKLHD-VGSQVTSFVVLMNNLIDIDKDVELLS 62
           SFEKGVL LP LIVDDNT+TNLLNVMAFEKLHD VGSQVTSFVVLM+NLI IDKDV+LLS
Sbjct: 533 SFEKGVLTLPSLIVDDNTKTNLLNVMAFEKLHDEVGSQVTSFVVLMHNLIRIDKDVQLLS 592

Query: 63  N 122
           N
Sbjct: 593 N 593

Query: 123  182
           
Sbjct: 653  593

[Close]

BLAST of CU168342 vs. NCBI nr
Match: gi|659120434|ref|XP_008460192.1| (PREDICTED: uncharacterized protein LOC103499077 [Cucumis melo])

HSP 1 Score: 91.7 bits (226), Expect = 6.7e-16
Identity = 53/83 (63.86%), Postives = 59/83 (71.08%), Query Frame = 3


Query: 6   FEKGVLKLPLLIVDDNTETNLLNVMAFEKLH-DVGSQVTSFVVLMNNLIDIDKDVELLSN 65
           F+ GVL+LP L VDD+TET LLNVMAFEKLH +V S VTSFVVLMNNLIDIDKDVELLS 
Sbjct: 773 FKNGVLELPHLTVDDDTETKLLNVMAFEKLHGNVRSYVTSFVVLMNNLIDIDKDVELLSE 832

Query: 66  DXXXXXXXXXXXXXXXXFSVLGK 125
           +                F+VLGK
Sbjct: 833 NKIIDNALGNDEDAAKLFTVLGK 855

Query: 126  185
           
Sbjct: 893  855

Query: 186  245
           
Sbjct: 953  855

Query: 246  252
           
Sbjct: 1013  855

[Close]

BLAST of CU168342 vs. NCBI nr
Match: gi|307135819|gb|ADN33691.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 91.7 bits (226), Expect = 6.7e-16
Identity = 53/83 (63.86%), Postives = 59/83 (71.08%), Query Frame = 3


Query: 6   FEKGVLKLPLLIVDDNTETNLLNVMAFEKLH-DVGSQVTSFVVLMNNLIDIDKDVELLSN 65
           F+ GVL+LP L VDD+TET LLNVMAFEKLH +V S VTSFVVLMNNLIDIDKDVELLS 
Sbjct: 312 FKNGVLELPHLTVDDDTETKLLNVMAFEKLHGNVRSYVTSFVVLMNNLIDIDKDVELLSE 371

Query: 66  DXXXXXXXXXXXXXXXXFSVLGK 125
           +                F+VLGK
Sbjct: 372 NKIIDNALGNDEDAAKLFTVLGK 394

Query: 126  185
           
Sbjct: 432  394

Query: 186  245
           
Sbjct: 492  394

Query: 246  252
           
Sbjct: 552  394

The following BLAST results are available for this feature:

BLAST of CU168342 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K9F5_CUCSA	2.1e-24	77.11	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G089270 PE=4 SV=1	[more]
A0A0A0KAA3_CUCSA	5.9e-19	88.52	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G091270 PE=4 SV=1	[more]
A0A0A0KAA3_CUCSA	2.7e-08	60.66	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G091270 PE=4 SV=1	[more]
A5AFY5_VITVI	1.9e-09	57.63	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_031339 PE=4 SV=1	[more]
M1C2E5_SOLTU	2.5e-09	55.93	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400022626 PE=4 SV=1	[more]

BLAST of CU168342 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778711703\|ref\|XP_011656783.1\|	5.1e-24	77.11	PREDICTED: UPF0481 protein At3g47200-like [Cucumis sativus]	[more]
gi\|700191196\|gb\|KGN46400.1\|	5.1e-24	77.11	hypothetical protein Csa_6G089270 [Cucumis sativus]	[more]
gi\|700191199\|gb\|KGN46403.1\|	1.9e-18	88.52	hypothetical protein Csa_6G091270 [Cucumis sativus]	[more]
gi\|659120434\|ref\|XP_008460192.1\|	6.7e-16	63.86	PREDICTED: uncharacterized protein LOC103499077 [Cucumis melo]	[more]
gi\|307135819\|gb\|ADN33691.1\|	6.7e-16	63.86	hypothetical protein [Cucumis melo subsp. melo]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR004158	DUF247_pln

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa6G089270	Csa6G089270	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
H0119622	H0119622	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004158	Protein of unknown function DUF247, plant	PFAM	PF03140	DUF247	coord: 2..84 score: 1.5
None	No IPR available	PANTHER	PTHR31549	FAMILY NOT NAMED	coord: 2..84 score: 6.2
None	No IPR available	PANTHER	PTHR31549:SF19	SUBFAMILY NOT NAMED	coord: 2..84 score: 6.2