CU167885 (transcribed_cluster) Cucumber (Chinese Long) v2

NameCU167885
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
Description3-ketoacyl-CoA synthase
LocationChr3 : 12123775 .. 12123968 (+)
Sequence length232
The following sequences are available for this feature:

transcribed_cluster sequence

TCCATTAACGGGGGAGGGAAAATGGTTGGGGAGAAGAATCCATCTCTTCCCCAATGGATTCTTCTCCCAACCATTTCCTCCTCCGTTATTCCACTCAATTACCTCATACCCCTTTCATTATTCTCATCCCCATACTAGCTTCCATTGAAGCCTATCTGTACTTCTCACATGCATGGCATCCCCTTTTCCATATCTTCCCACTGTCTTTCCTTGTCGTCCTCATCATCTTCAA
BLAST of CU167885 vs. TrEMBL
Match: A0A0A0L8H3_CUCSA (3-ketoacyl-CoA synthase OS=Cucumis sativus GN=Csa_3G178510 PE=3 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 2.9e-25
Identity = 57/59 (96.61%), Postives = 57/59 (96.61%), Query Frame = 3

Query: 54  MDSSPNHFLLRYSTQLPHTPFIILIPILASIEAYLYFSHAWHPLFHIFPLSFLVVLIIF 113
           MDSSPNHFLLRYS QLPHTPFIILIPIL SIEAYLYFSHAWHPLFHIFPLSFLVVLIIF
Sbjct: 1   MDSSPNHFLLRYSAQLPHTPFIILIPILTSIEAYLYFSHAWHPLFHIFPLSFLVVLIIF 59

Query: 114 173
           
Sbjct: 61  59

Query: 174 231
           
Sbjct: 121 59

BLAST of CU167885 vs. TrEMBL
Match: A0A0A0L5P9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G178515 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 4.8e-07
Identity = 26/26 (100.00%), Postives = 26/26 (100.00%), Query Frame = -1

Query: 155 LKMMRTTRKDSGKIWKRGCHACEKYR 214
           LKMMRTTRKDSGKIWKRGCHACEKYR
Sbjct: 90  LKMMRTTRKDSGKIWKRGCHACEKYR 115

Query: 215 233
           
Sbjct: 150 115

BLAST of CU167885 vs. NCBI nr
Match: gi|778688530|ref|XP_004148150.2| (PREDICTED: 3-ketoacyl-CoA synthase 5-like [Cucumis sativus])

HSP 1 Score: 116.3 bits (290), Expect = 2.3e-23
Identity = 57/59 (96.61%), Postives = 57/59 (96.61%), Query Frame = 3

Query: 54  MDSSPNHFLLRYSTQLPHTPFIILIPILASIEAYLYFSHAWHPLFHIFPLSFLVVLIIF 113
           MDSSPNHFLLRYS QLPHTPFIILIPIL SIEAYLYFSHAWHPLFHIFPLSFLVVLIIF
Sbjct: 1   MDSSPNHFLLRYSAQLPHTPFIILIPILTSIEAYLYFSHAWHPLFHIFPLSFLVVLIIF 59

Query: 114 173
           
Sbjct: 61  59

Query: 174 231
           
Sbjct: 121 59

BLAST of CU167885 vs. NCBI nr
Match: gi|659077803|ref|XP_008439394.1| (PREDICTED: 3-ketoacyl-CoA synthase 5-like [Cucumis melo])

HSP 1 Score: 108.6 bits (270), Expect = 4.8e-21
Identity = 54/59 (91.53%), Postives = 55/59 (93.22%), Query Frame = 3

Query: 54  MDSSPNHFLLRYSTQLPHTPFIILIPILASIEAYLYFSHAWHPLFHIFPLSFLVVLIIF 113
           MDSSP+HFLLRYSTQL HTPFIILIPIL SIEAYLYFSHAWHP FHIFPLSFLVV IIF
Sbjct: 1   MDSSPDHFLLRYSTQLLHTPFIILIPILTSIEAYLYFSHAWHPFFHIFPLSFLVVSIIF 59

Query: 114 173
           
Sbjct: 61  59

Query: 174 231
           
Sbjct: 121 59

BLAST of CU167885 vs. NCBI nr
Match: gi|700202177|gb|KGN57310.1| (hypothetical protein Csa_3G178515 [Cucumis sativus])

HSP 1 Score: 61.6 bits (148), Expect = 6.9e-07
Identity = 26/26 (100.00%), Postives = 26/26 (100.00%), Query Frame = -1

Query: 155 LKMMRTTRKDSGKIWKRGCHACEKYR 214
           LKMMRTTRKDSGKIWKRGCHACEKYR
Sbjct: 90  LKMMRTTRKDSGKIWKRGCHACEKYR 115

Query: 215 233
           
Sbjct: 150 115

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0L8H3_CUCSA2.9e-2596.613-ketoacyl-CoA synthase OS=Cucumis sativus GN=Csa_3G178510 PE=3 SV=1[more]
A0A0A0L5P9_CUCSA4.8e-07100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G178515 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|778688530|ref|XP_004148150.2|2.3e-2396.61PREDICTED: 3-ketoacyl-CoA synthase 5-like [Cucumis sativus][more]
gi|659077803|ref|XP_008439394.1|4.8e-2191.53PREDICTED: 3-ketoacyl-CoA synthase 5-like [Cucumis melo][more]
gi|700202177|gb|KGN57310.1|6.9e-07100.00hypothetical protein Csa_3G178515 [Cucumis sativus][more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa3G178510Csa3G178510gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
H0115142H0115142EST