CU167488 (transcribed_cluster) Cucumber (Chinese Long) v2

Overview
NameCU167488
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 498972 .. 499178 (+)
Sequence length207
Genome Viewer
Sequences
The following sequences are available for this feature:

transcribed_cluster sequence

GTGATGCAGTAGTGTCATCCAACAAGGAGAGCCAGTGGGCAGCTCCGCTATCACCCATCGTATCCTCATCCTCCTTTGTGACGGAGGTGAGTCTGTGGAGAAGAAGCTGCCCCCCGTCACCATCAAGAACCATTGTTGGTTTGGTGTCTCTGTCACTCCTGATGGAACTGAAGGGAAATTGTAAAACACTGAAGGAGGGTGATTGTT
Homology
[Close]
BLAST of CU167488 vs. TrEMBL
Match: A0A0A0LU55_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G002800 PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.3e-11
Identity = 37/44 (84.09%), Postives = 37/44 (84.09%), Query Frame = -3 

Query: 2   MVLDGDGGQLLLHRLTSVTKEDEDTMGDSGAAHWLSLLDDTTAS 61
           MVLDGDGG       TSVTKEDEDTMGDSGAAHWLSLLDDTTAS
Sbjct: 1   MVLDGDGGSFFSTDFTSVTKEDEDTMGDSGAAHWLSLLDDTTAS 44

Query: 62   121
           
Sbjct: 61   44

Query: 122  134
           
Sbjct: 121  44

[Close]
BLAST of CU167488 vs. NCBI nr
Match: gi|700208415|gb|KGN63511.1| (hypothetical protein Csa_1G002800 [Cucumis sativus])

HSP 1 Score: 76.6 bits (187), Expect = 1.8e-11
Identity = 37/44 (84.09%), Postives = 37/44 (84.09%), Query Frame = -3 

Query: 2   MVLDGDGGQLLLHRLTSVTKEDEDTMGDSGAAHWLSLLDDTTAS 61
           MVLDGDGG       TSVTKEDEDTMGDSGAAHWLSLLDDTTAS
Sbjct: 1   MVLDGDGGSFFSTDFTSVTKEDEDTMGDSGAAHWLSLLDDTTAS 44

Query: 62   121
           
Sbjct: 61   44

Query: 122  134
           
Sbjct: 121  44

[Close]
BLAST of CU167488 vs. NCBI nr
Match: gi|449440598|ref|XP_004138071.1| (PREDICTED: DELLA protein GAI-like [Cucumis sativus])

HSP 1 Score: 76.6 bits (187), Expect = 1.8e-11
Identity = 37/44 (84.09%), Postives = 37/44 (84.09%), Query Frame = -3 

Query: 2   MVLDGDGGQLLLHRLTSVTKEDEDTMGDSGAAHWLSLLDDTTAS 61
           MVLDGDGG       TSVTKEDEDTMGDSGAAHWLSLLDDTTAS
Sbjct: 1   MVLDGDGGSFFSTDFTSVTKEDEDTMGDSGAAHWLSLLDDTTAS 44

Query: 62   121
           
Sbjct: 61   44

Query: 122  134
           
Sbjct: 121  44

[Close]
BLAST of CU167488 vs. NCBI nr
Match: gi|659129006|ref|XP_008464481.1| (PREDICTED: DELLA protein GAI-like [Cucumis melo])

HSP 1 Score: 70.5 bits (171), Expect = 1.3e-09
Identity = 32/44 (72.73%), Postives = 36/44 (81.82%), Query Frame = -3 

Query: 2   MVLDGDGGQLLLHRLTSVTKEDEDTMGDSGAAHWLSLLDDTTAS 61
           M LDGDGG       TS+TKEDEDT+G+SGAAHWLSLLDDTTA+
Sbjct: 1   MALDGDGGSFFSTDFTSITKEDEDTVGESGAAHWLSLLDDTTAA 44

Query: 62   121
           
Sbjct: 61   44

Query: 122  134
           
Sbjct: 121  44

The following BLAST results are available for this feature:
BLAST of CU167488 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LU55_CUCSA1.3e-1184.09Uncharacterized protein OS=Cucumis sativus GN=Csa_1G002800 PE=3 SV=1[more]
BLAST of CU167488 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700208415|gb|KGN63511.1|1.8e-1184.09hypothetical protein Csa_1G002800 [Cucumis sativus][more]
gi|449440598|ref|XP_004138071.1|1.8e-1184.09PREDICTED: DELLA protein GAI-like [Cucumis sativus][more]
gi|659129006|ref|XP_008464481.1|1.3e-0972.73PREDICTED: DELLA protein GAI-like [Cucumis melo][more]
Relationships

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa1G002800Csa1G002800gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
H0111399H0111399EST