CU167454 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU167454
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Ribonuclease P protein subunit P38, related protein, putative
Location	Chr3 : 15369637 .. 15370057 (-)
Sequence length	251

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

CATGCTCTAGGAGTGTCTTACAAAATCAAAAGACTGAAGCAGCAATTTCTTCTACTTGAGAGGCTCGTTGGAAAACAAGAAAACTGCTCGGAATTCCGAAAATGAGGATAATGGACAAGTTGGCATTAGAGACTTTCTTTTGTTTCTGACACTGCTGAATAAACAAGTGGGAAGATATAATTCTCTGCAGGAGAAAACTGATGAACTCTGCCAAAGGATGCATGATTACGAAGCAAGTAGTAAAAAGTGGA

Library


Library category	ESTs
hermaphrodite flower library	1

Homology

[Close]

BLAST of CU167454 vs. TrEMBL
Match: A0A0A0LAI2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G239260 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 1.9e-22
Identity = 57/74 (77.03%), Postives = 60/74 (81.08%), Query Frame = 2


Query: 23  KSKD*SSNFFYLRGSLENKKTARNSENEDNGQVGIRDFLLFLTLLNKQVGRYNSLQEKTD 82
           K K     F  L   +  ++TARNSENEDNGQVGIRDFLLFLTLLNKQVGRYNSLQEKTD
Sbjct: 639 KIKRLKQQFLLLERLVGKQETARNSENEDNGQVGIRDFLLFLTLLNKQVGRYNSLQEKTD 698

Query: 83  ELCQRMHDYEASSK 142
           ELCQRMHDYEAS K
Sbjct: 699 ELCQRMHDYEASVK 712

Query: 143  202
           
Sbjct: 759  712

Query: 203  245
           
Sbjct: 819  712

[Close]

BLAST of CU167454 vs. TrEMBL
Match: A0A0A0LAI2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G239260 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 3.7e-05
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = 1


Query: 1   HALGVSYKIKRLKQQFLLLERLVGKQE 60
           HALGVSYKIKRLKQQFLLLERLVGKQE
Sbjct: 632 HALGVSYKIKRLKQQFLLLERLVGKQE 658

Query: 61   82
           
Sbjct: 692  658

HSP 2 Score: 111.3 bits (277), Expect = 5.7e-22
Identity = 56/74 (75.68%), Postives = 60/74 (81.08%), Query Frame = 2


Query: 23  KSKD*SSNFFYLRGSLENKKTARNSENEDNGQVGIRDFLLFLTLLNKQVGRYNSLQEKTD 82
           K K     F  L   +  ++TARNSENEDNGQVGIR+FLLFLTLLNKQVGRYNSLQEKTD
Sbjct: 638 KIKRLKQQFLLLERLVGKQETARNSENEDNGQVGIREFLLFLTLLNKQVGRYNSLQEKTD 697

Query: 83  ELCQRMHDYEASSK 142
           ELCQRMHDYEAS K
Sbjct: 698 ELCQRMHDYEASVK 711

Query: 143  202
           
Sbjct: 758  711

Query: 203  245
           
Sbjct: 818  711

[Close]

BLAST of CU167454 vs. TrEMBL
Match: E5GBA4_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 3.7e-05
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = 1


Query: 1   HALGVSYKIKRLKQQFLLLERLVGKQE 60
           HALGVSYKIKRLKQQFLLLERLVGKQE
Sbjct: 631 HALGVSYKIKRLKQQFLLLERLVGKQE 657

Query: 61   82
           
Sbjct: 691  657

HSP 2 Score: 67.8 bits (164), Expect = 7.2e-09
Identity = 34/68 (50.00%), Postives = 43/68 (63.24%), Query Frame = 2


Query: 23  KSKD*SSNFFYLRGSLENKKTARNSENEDNGQVGIRDFLLFLTLLNKQVGRYNSLQEKTD 82
           K K  S  F  L      ++ A NSEN DNG+ G+R F   ++LLNKQV RY SLQ K D
Sbjct: 644 KIKRLSQQFVMLERLTSKQEPAGNSENNDNGRSGMRGFRALMSLLNKQVARYESLQGKID 703

Query: 83  ELCQRMHD 142
           +LC+RMH+
Sbjct: 704 DLCKRMHE 711

Query: 143  202
           
Sbjct: 764  711

Query: 203  227
           
Sbjct: 824  711

[Close]

BLAST of CU167454 vs. TrEMBL
Match: K4BI82_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 7.7e-03
Identity = 22/27 (81.48%), Postives = 24/27 (88.89%), Query Frame = 1


Query: 1   HALGVSYKIKRLKQQFLLLERLVGKQE 60
           HALGVSYKIKRL QQF++LERL  KQE
Sbjct: 637 HALGVSYKIKRLSQQFVMLERLTSKQE 663

Query: 61   82
           
Sbjct: 697  663

HSP 2 Score: 64.7 bits (156), Expect = 6.1e-08
Identity = 33/68 (48.53%), Postives = 42/68 (61.76%), Query Frame = 2


Query: 23  KSKD*SSNFFYLRGSLENKKTARNSENEDNGQVGIRDFLLFLTLLNKQVGRYNSLQEKTD 82
           K K  +  F  L      ++ A NSEN DNG+ G R F   ++LLNKQV RY SLQ K D
Sbjct: 590 KIKRLTQQFVMLERLRGKQEPAGNSENNDNGRSGTRGFRALMSLLNKQVARYESLQGKID 649

Query: 83  ELCQRMHD 142
           +LC+RMH+
Sbjct: 650 DLCKRMHE 657

Query: 143  202
           
Sbjct: 710  657

Query: 203  227
           
Sbjct: 770  657

[Close]

BLAST of CU167454 vs. TrEMBL
Match: A0A0V0IW85_SOLCH (Putative nucleoprotein TPR-like OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 4.5e-03
Identity = 23/27 (85.19%), Postives = 25/27 (92.59%), Query Frame = 1


Query: 1   HALGVSYKIKRLKQQFLLLERLVGKQE 60
           HALGVSYKIKRL QQF++LERL GKQE
Sbjct: 583 HALGVSYKIKRLTQQFVMLERLRGKQE 609

Query: 61   82
           
Sbjct: 643  609

HSP 2 Score: 64.7 bits (156), Expect = 6.1e-08
Identity = 33/68 (48.53%), Postives = 42/68 (61.76%), Query Frame = 2


Query: 23  KSKD*SSNFFYLRGSLENKKTARNSENEDNGQVGIRDFLLFLTLLNKQVGRYNSLQEKTD 82
           K K  +  F  L      ++ A NSEN DNG+ G R F   ++LLNKQV RY SLQ K D
Sbjct: 509 KIKRLTQQFVMLERLRGKQEPAGNSENNDNGRSGTRGFRALMSLLNKQVARYESLQGKID 568

Query: 83  ELCQRMHD 142
           +LC+RMH+
Sbjct: 569 DLCKRMHE 576

Query: 143  202
           
Sbjct: 629  576

Query: 203  227
           
Sbjct: 689  576

[Close]

BLAST of CU167454 vs. NCBI nr
Match: gi|778680446|ref|XP_011651318.1| (PREDICTED: myosin heavy chain, striated muscle [Cucumis sativus])

HSP 1 Score: 112.5 bits (280), Expect = 3.6e-22
Identity = 57/74 (77.03%), Postives = 60/74 (81.08%), Query Frame = 2


Query: 23  KSKD*SSNFFYLRGSLENKKTARNSENEDNGQVGIRDFLLFLTLLNKQVGRYNSLQEKTD 82
           K K     F  L   +  ++TARNSENEDNGQVGIRDFLLFLTLLNKQVGRYNSLQEKTD
Sbjct: 639 KIKRLKQQFLLLERLVGKQETARNSENEDNGQVGIRDFLLFLTLLNKQVGRYNSLQEKTD 698

Query: 83  ELCQRMHDYEASSK 142
           ELCQRMHDYEAS K
Sbjct: 699 ELCQRMHDYEASVK 712

Query: 143  202
           
Sbjct: 759  712

Query: 203  245
           
Sbjct: 819  712

[Close]

BLAST of CU167454 vs. NCBI nr
Match: gi|659133640|ref|XP_008466834.1| (PREDICTED: myosin heavy chain, striated muscle [Cucumis melo])

HSP 1 Score: 110.9 bits (276), Expect = 1.1e-21
Identity = 56/74 (75.68%), Postives = 60/74 (81.08%), Query Frame = 2


Query: 23  KSKD*SSNFFYLRGSLENKKTARNSENEDNGQVGIRDFLLFLTLLNKQVGRYNSLQEKTD 82
           K K     F  L   +  ++TARNSENEDNGQVGIR+FLLFLTLLNKQVGRYNSLQEKTD
Sbjct: 638 KIKRLKQQFLLLERLVGKQETARNSENEDNGQVGIREFLLFLTLLNKQVGRYNSLQEKTD 697

Query: 83  ELCQRMHDYEASSK 142
           ELCQRMHDYEAS K
Sbjct: 698 ELCQRMHDYEASVK 711

Query: 143  202
           
Sbjct: 758  711

Query: 203  245
           
Sbjct: 818  711

[Close]

BLAST of CU167454 vs. NCBI nr
Match: gi|723682241|ref|XP_010318025.1| (PREDICTED: nucleoprotein TPR [Solanum lycopersicum])

HSP 1 Score: 67.8 bits (164), Expect = 1.0e-08
Identity = 34/68 (50.00%), Postives = 43/68 (63.24%), Query Frame = 2


Query: 23  KSKD*SSNFFYLRGSLENKKTARNSENEDNGQVGIRDFLLFLTLLNKQVGRYNSLQEKTD 82
           K K  S  F  L      ++ A NSEN DNG+ G+R F   ++LLNKQV RY SLQ K D
Sbjct: 644 KIKRLSQQFVMLERLTSKQEPAGNSENNDNGRSGMRGFRALMSLLNKQVARYESLQGKID 703

Query: 83  ELCQRMHD 142
           +LC+RMH+
Sbjct: 704 DLCKRMHE 711

Query: 143  202
           
Sbjct: 764  711

Query: 203  227
           
Sbjct: 824  711

[Close]

BLAST of CU167454 vs. NCBI nr
Match: gi|657969948|ref|XP_008376709.1| (PREDICTED: spindle pole body component 110 [Malus domestica])

HSP 1 Score: 66.2 bits (160), Expect = 3.0e-08
Identity = 29/45 (64.44%), Postives = 37/45 (82.22%), Query Frame = 2


Query: 92  NSENEDNGQVGIRDFLLFLTLLNKQVGRYNSLQEKTDELCQRMHD 151
           ++E+ D+GQ GI+ FL+ + LLNKQVGRY SLQ K D+LCQRMHD
Sbjct: 639 HTESNDDGQSGIKGFLMLMLLLNKQVGRYQSLQGKVDDLCQRMHD 683

Query: 152  211
           
Sbjct: 699  683

Query: 212  227
           
Sbjct: 759  683

[Close]

BLAST of CU167454 vs. NCBI nr
Match: gi|694346448|ref|XP_009357317.1| (PREDICTED: golgin subfamily A member 6-like protein 22 [Pyrus x bretschneideri])

HSP 1 Score: 66.2 bits (160), Expect = 3.0e-08
Identity = 29/45 (64.44%), Postives = 37/45 (82.22%), Query Frame = 2


Query: 92  NSENEDNGQVGIRDFLLFLTLLNKQVGRYNSLQEKTDELCQRMHD 151
           ++E+ D+GQ GI+ FL+ + LLNKQVGRY SLQ K D+LCQRMHD
Sbjct: 639 HTESSDDGQSGIKGFLMLMLLLNKQVGRYQSLQGKVDDLCQRMHD 683

Query: 152  211
           
Sbjct: 699  683

Query: 212  227
           
Sbjct: 759  683

The following BLAST results are available for this feature:

BLAST of CU167454 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LAI2_CUCSA	1.9e-22	77.03	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G239260 PE=4 SV=1	[more]
A0A0A0LAI2_CUCSA	3.7e-05	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G239260 PE=4 SV=1	[more]
E5GBA4_CUCME	3.7e-05	100.00	Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
K4BI82_SOLLC	7.7e-03	81.48	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]
A0A0V0IW85_SOLCH	4.5e-03	85.19	Putative nucleoprotein TPR-like OS=Solanum chacoense PE=4 SV=1	[more]

BLAST of CU167454 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778680446\|ref\|XP_011651318.1\|	3.6e-22	77.03	PREDICTED: myosin heavy chain, striated muscle [Cucumis sativus]	[more]
gi\|659133640\|ref\|XP_008466834.1\|	1.1e-21	75.68	PREDICTED: myosin heavy chain, striated muscle [Cucumis melo]	[more]
gi\|723682241\|ref\|XP_010318025.1\|	1.0e-08	50.00	PREDICTED: nucleoprotein TPR [Solanum lycopersicum]	[more]
gi\|657969948\|ref\|XP_008376709.1\|	3.0e-08	64.44	PREDICTED: spindle pole body component 110 [Malus domestica]	[more]
gi\|694346448\|ref\|XP_009357317.1\|	3.0e-08	64.44	PREDICTED: golgin subfamily A member 6-like protein 22 [Pyrus x bretschneideri]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa3G239260	Csa3G239260	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
H0111084	H0111084	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 59..79 scor
None	No IPR available	PANTHER	PTHR21596	RIBONUCLEASE P SUBUNIT P38	coord: 1..75 score: 8.7