CU167372 (transcribed_cluster) Cucumber (Chinese Long) v2

NameCU167372
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 4361673 .. 4361897 (-)
Sequence length235
The following sequences are available for this feature:

transcribed_cluster sequence

CATCAGAATAAACGAGGATTCGAGAATTGAAGGAGCGGGTTCTAACTGACCAGGCTGCAGCTAAGTATTTAGTTTTACCGAGAATCTCCAGCAGCAATCAACGGCGGTTGAGGCGGAGGAGGGCGGCGATTCAGGATTTATGAAGAATTCAGCGAAGGATTGGGTCCTCAATGTAACAAAGGTATTCGTCATCAAACATTGAAAGTCTTTTTTTTGGCTTTCTTTCTGATAATTT
BLAST of CU167372 vs. TrEMBL
Match: A0A0A0K8R1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G056530 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 5.5e-19
Identity = 54/74 (72.97%), Postives = 58/74 (78.38%), Query Frame = -2

Query: 4   KESQKKDFQCLMTNTFVTLRTQSFAEFFINPESPPSSASTAVDCCWRFSVKLNT*LQPGQ 63
           ++  KK F  +      TLRTQSFAEFFINPESPPSSASTAVDCCWRFS  +   LQPGQ
Sbjct: 27  RKKHKKSFN-VDDEYLCTLRTQSFAEFFINPESPPSSASTAVDCCWRFSETIL--LQPGQ 86

Query: 64  LEPAPSILESSFIL 123
           LEPAPSILESSFIL
Sbjct: 87  LEPAPSILESSFIL 97

Query: 124 183
           
Sbjct: 147 97

Query: 184 226
           
Sbjct: 207 97

BLAST of CU167372 vs. NCBI nr
Match: gi|778722006|ref|XP_011658390.1| (PREDICTED: UPF0496 protein At3g49070-like [Cucumis sativus])

HSP 1 Score: 102.8 bits (255), Expect = 2.7e-19
Identity = 54/74 (72.97%), Postives = 58/74 (78.38%), Query Frame = -2

Query: 4   KESQKKDFQCLMTNTFVTLRTQSFAEFFINPESPPSSASTAVDCCWRFSVKLNT*LQPGQ 63
           ++  KK F  +      TLRTQSFAEFFINPESPPSSASTAVDCCWRFS  +   LQPGQ
Sbjct: 27  RKKHKKSFN-VDDEYLCTLRTQSFAEFFINPESPPSSASTAVDCCWRFSETIL--LQPGQ 86

Query: 64  LEPAPSILESSFIL 123
           LEPAPSILESSFIL
Sbjct: 87  LEPAPSILESSFIL 97

Query: 124 183
           
Sbjct: 147 97

Query: 184 226
           
Sbjct: 207 97

BLAST of CU167372 vs. NCBI nr
Match: gi|659081782|ref|XP_008441510.1| (PREDICTED: UPF0496 protein At3g49070-like [Cucumis melo])

HSP 1 Score: 78.6 bits (192), Expect = 5.5e-12
Identity = 42/64 (65.62%), Postives = 48/64 (75.00%), Query Frame = -2

Query: 4   TLRTQSFAEFFINPES-----PPS--SASTAVDCCWRFSVKLNT*LQPGQLEPAPSILES 63
           TLRT+SFAEFF+ PES     PPS  S+S+A DCCWRFS  +   LQPGQLE  PSILES
Sbjct: 51  TLRTESFAEFFLKPESNVHESPPSTTSSSSAADCCWRFSETIL--LQPGQLEAVPSILES 110

Query: 64  SFIL 123
           SF+L
Sbjct: 111 SFLL 112

Query: 124 175
           
Sbjct: 171 112

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0K8R1_CUCSA5.5e-1972.97Uncharacterized protein OS=Cucumis sativus GN=Csa_6G056530 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|778722006|ref|XP_011658390.1|2.7e-1972.97PREDICTED: UPF0496 protein At3g49070-like [Cucumis sativus][more]
gi|659081782|ref|XP_008441510.1|5.5e-1265.63PREDICTED: UPF0496 protein At3g49070-like [Cucumis melo][more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa6G056530Csa6G056530gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
H0110244H0110244EST