CU166965 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU166965
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Prostaglandin E synthase 2
Location	Chr1 : 2735585 .. 2736612 (-)
Sequence length	248

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

TACGATATTCCATATAAAGTTGTCGAGGTCAATCCACTTAGTAAGAAAGAAAATTAAATGGTCGGATTATAAGAAGGTGCCTATACTGGTGGTTGATGGTGAACAGTTGGTTGACTCGTCAGCCATTATCGACCAGTTGAGCCACAGGGTTTTGCCAGATAAGAATGTTTCTTCTGTCTCTGAAGATGATGAAGAGACAAAGTGGCGCAGATGGGTAGATAATCACTTGGTACATATGTTATCACCAA

Library


Library category	ESTs
hermaphrodite flower library	1

Homology

[Close]

BLAST of CU166965 vs. Swiss-Prot
Match: PGES2_DANRE (Prostaglandin E synthase 2 OS=Danio rerio GN=ptges2 PE=2 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 1.6e-06
Identity = 38/112 (33.93%), Postives = 51/112 (45.54%), Query Frame = 2


Query: 38  LVRKKIKWSDYKKVPILVVDGE-QLVDSSAIIDQLSHRV-LPDKNVSSV--------SED 97
           ++R++IKWS Y+KVPIL+V+G  QL DSS II  L   +   DK +S +        S++
Sbjct: 140 VMRQEIKWSTYRKVPILMVNGTVQLNDSSVIISALKTYISSKDKKISEILACYPEMKSKN 199

Query: 98  D--------------------------------EETKWRRWVDNHLVHMLSP 157
           D                                EE KWR W D+ LVH++SP
Sbjct: 200 DRGKDVIEFGNKYWVMVHDADADQLYPGKDSRKEEIKWRTWADDWLVHLISP 251

Query: 158  217
           
Sbjct: 260  251

Query: 218  248
           
Sbjct: 320  251

[Close]

BLAST of CU166965 vs. TrEMBL
Match: A0A0A0LSA1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G025110 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 8.6e-31
Identity = 67/70 (95.71%), Postives = 69/70 (98.57%), Query Frame = 2


Query: 38  LVRKKIKWSDYKKVPILVVDGEQLVDSSAIIDQLSHRVLPDKNVSSVSEDDEETKWRRWV 97
           L +K+IKWSDYKKVPILVVDGEQLVDSSAIIDQLSHRVLPDKNVSSVSEDDEETKWRRWV
Sbjct: 131 LSKKEIKWSDYKKVPILVVDGEQLVDSSAIIDQLSHRVLPDKNVSSVSEDDEETKWRRWV 190

Query: 98  DNHLVHMLSP 157
           DNHLVHMLSP
Sbjct: 191 DNHLVHMLSP 200

Query: 158  217
           
Sbjct: 251  200

Query: 218  248
           
Sbjct: 311  200

[Close]

BLAST of CU166965 vs. TrEMBL
Match: A0A0D2RKR6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G133000 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 2.7e-24
Identity = 53/68 (77.94%), Postives = 64/68 (94.12%), Query Frame = 2


Query: 44  RKKIKWSDYKKVPILVVDGEQLVDSSAIIDQLSHRVLPDKNVSSVSEDDEETKWRRWVDN 103
           +K+IKWSDYKKVPIL+VDG+QLVDSSAIIDQLS ++LP K + SV+++DEETKWRRWVDN
Sbjct: 134 KKEIKWSDYKKVPILMVDGQQLVDSSAIIDQLSEKILPGKAIISVADEDEETKWRRWVDN 193

Query: 104 HLVHMLSP 163
           HLVH+LSP
Sbjct: 194 HLVHVLSP 201

Query: 164  223
           
Sbjct: 254  201

Query: 224  248
           
Sbjct: 314  201

[Close]

BLAST of CU166965 vs. TrEMBL
Match: A0A0B0NPI4_GOSAR (Prostaglandin E synthase 2 OS=Gossypium arboreum GN=F383_16951 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 2.7e-24
Identity = 53/68 (77.94%), Postives = 64/68 (94.12%), Query Frame = 2


Query: 44  RKKIKWSDYKKVPILVVDGEQLVDSSAIIDQLSHRVLPDKNVSSVSEDDEETKWRRWVDN 103
           +K+IKWSDYKKVPIL+VDG+QLVDSSAIIDQLS ++LP K + SV+++DEETKWRRWVDN
Sbjct: 133 KKEIKWSDYKKVPILMVDGQQLVDSSAIIDQLSEKILPGKAIISVADEDEETKWRRWVDN 192

Query: 104 HLVHMLSP 163
           HLVH+LSP
Sbjct: 193 HLVHVLSP 200

Query: 164  223
           
Sbjct: 253  200

Query: 224  248
           
Sbjct: 313  200

[Close]

BLAST of CU166965 vs. TrEMBL
Match: A0A0D2REB1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G133000 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 2.7e-24
Identity = 53/68 (77.94%), Postives = 64/68 (94.12%), Query Frame = 2


Query: 44  RKKIKWSDYKKVPILVVDGEQLVDSSAIIDQLSHRVLPDKNVSSVSEDDEETKWRRWVDN 103
           +K+IKWSDYKKVPIL+VDG+QLVDSSAIIDQLS ++LP K + SV+++DEETKWRRWVDN
Sbjct: 133 KKEIKWSDYKKVPILMVDGQQLVDSSAIIDQLSEKILPGKAIISVADEDEETKWRRWVDN 192

Query: 104 HLVHMLSP 163
           HLVH+LSP
Sbjct: 193 HLVHVLSP 200

Query: 164  223
           
Sbjct: 253  200

Query: 224  248
           
Sbjct: 313  200

[Close]

BLAST of CU166965 vs. TrEMBL
Match: A0A0D2SG65_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G133000 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 2.7e-24
Identity = 53/68 (77.94%), Postives = 64/68 (94.12%), Query Frame = 2


Query: 44  RKKIKWSDYKKVPILVVDGEQLVDSSAIIDQLSHRVLPDKNVSSVSEDDEETKWRRWVDN 103
           +K+IKWSDYKKVPIL+VDG+QLVDSSAIIDQLS ++LP K + SV+++DEETKWRRWVDN
Sbjct: 133 KKEIKWSDYKKVPILMVDGQQLVDSSAIIDQLSEKILPGKAIISVADEDEETKWRRWVDN 192

Query: 104 HLVHMLSP 163
           HLVH+LSP
Sbjct: 193 HLVHVLSP 200

Query: 164  223
           
Sbjct: 253  200

Query: 224  248
           
Sbjct: 313  200

[Close]

BLAST of CU166965 vs. NCBI nr
Match: gi|449439141|ref|XP_004137346.1| (PREDICTED: prostaglandin E synthase 2-like [Cucumis sativus])

HSP 1 Score: 140.6 bits (353), Expect = 1.2e-30
Identity = 67/70 (95.71%), Postives = 69/70 (98.57%), Query Frame = 2


Query: 38  LVRKKIKWSDYKKVPILVVDGEQLVDSSAIIDQLSHRVLPDKNVSSVSEDDEETKWRRWV 97
           L +K+IKWSDYKKVPILVVDGEQLVDSSAIIDQLSHRVLPDKNVSSVSEDDEETKWRRWV
Sbjct: 131 LSKKEIKWSDYKKVPILVVDGEQLVDSSAIIDQLSHRVLPDKNVSSVSEDDEETKWRRWV 190

Query: 98  DNHLVHMLSP 157
           DNHLVHMLSP
Sbjct: 191 DNHLVHMLSP 200

Query: 158  217
           
Sbjct: 251  200

Query: 218  248
           
Sbjct: 311  200

[Close]

BLAST of CU166965 vs. NCBI nr
Match: gi|659106979|ref|XP_008453485.1| (PREDICTED: prostaglandin E synthase 2-like [Cucumis melo])

HSP 1 Score: 136.0 bits (341), Expect = 3.0e-29
Identity = 65/70 (92.86%), Postives = 68/70 (97.14%), Query Frame = 2


Query: 38  LVRKKIKWSDYKKVPILVVDGEQLVDSSAIIDQLSHRVLPDKNVSSVSEDDEETKWRRWV 97
           L +K+IKWSDYKKVPILVVDGEQLVDSSAIIDQLSHRVL DKNVSSVSEDDEETKWRRWV
Sbjct: 131 LSKKEIKWSDYKKVPILVVDGEQLVDSSAIIDQLSHRVLSDKNVSSVSEDDEETKWRRWV 190

Query: 98  DNHLVHMLSP 157
           DNHLVH+LSP
Sbjct: 191 DNHLVHILSP 200

Query: 158  217
           
Sbjct: 251  200

Query: 218  248
           
Sbjct: 311  200

[Close]

BLAST of CU166965 vs. NCBI nr
Match: gi|763762931|gb|KJB30185.1| (hypothetical protein B456_005G133000 [Gossypium raimondii])

HSP 1 Score: 119.0 bits (297), Expect = 3.9e-24
Identity = 53/68 (77.94%), Postives = 64/68 (94.12%), Query Frame = 2


Query: 44  RKKIKWSDYKKVPILVVDGEQLVDSSAIIDQLSHRVLPDKNVSSVSEDDEETKWRRWVDN 103
           +K+IKWSDYKKVPIL+VDG+QLVDSSAIIDQLS ++LP K + SV+++DEETKWRRWVDN
Sbjct: 133 KKEIKWSDYKKVPILMVDGQQLVDSSAIIDQLSEKILPGKAIISVADEDEETKWRRWVDN 192

Query: 104 HLVHMLSP 163
           HLVH+LSP
Sbjct: 193 HLVHVLSP 200

Query: 164  223
           
Sbjct: 253  200

Query: 224  248
           
Sbjct: 313  200

[Close]

BLAST of CU166965 vs. NCBI nr
Match: gi|728833548|gb|KHG12991.1| (Prostaglandin E synthase 2 [Gossypium arboreum])

HSP 1 Score: 119.0 bits (297), Expect = 3.9e-24
Identity = 53/68 (77.94%), Postives = 64/68 (94.12%), Query Frame = 2


Query: 44  RKKIKWSDYKKVPILVVDGEQLVDSSAIIDQLSHRVLPDKNVSSVSEDDEETKWRRWVDN 103
           +K+IKWSDYKKVPIL+VDG+QLVDSSAIIDQLS ++LP K + SV+++DEETKWRRWVDN
Sbjct: 133 KKEIKWSDYKKVPILMVDGQQLVDSSAIIDQLSEKILPGKAIISVADEDEETKWRRWVDN 192

Query: 104 HLVHMLSP 163
           HLVH+LSP
Sbjct: 193 HLVHVLSP 200

Query: 164  223
           
Sbjct: 253  200

Query: 224  248
           
Sbjct: 313  200

[Close]

BLAST of CU166965 vs. NCBI nr
Match: gi|763762932|gb|KJB30186.1| (hypothetical protein B456_005G133000 [Gossypium raimondii])

HSP 1 Score: 119.0 bits (297), Expect = 3.9e-24
Identity = 53/68 (77.94%), Postives = 64/68 (94.12%), Query Frame = 2


Query: 44  RKKIKWSDYKKVPILVVDGEQLVDSSAIIDQLSHRVLPDKNVSSVSEDDEETKWRRWVDN 103
           +K+IKWSDYKKVPIL+VDG+QLVDSSAIIDQLS ++LP K + SV+++DEETKWRRWVDN
Sbjct: 134 KKEIKWSDYKKVPILMVDGQQLVDSSAIIDQLSEKILPGKAIISVADEDEETKWRRWVDN 193

Query: 104 HLVHMLSP 163
           HLVH+LSP
Sbjct: 194 HLVHVLSP 201

Query: 164  223
           
Sbjct: 254  201

Query: 224  248
           
Sbjct: 314  201

The following BLAST results are available for this feature:

BLAST of CU166965 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PGES2_DANRE	1.6e-06	33.93	Prostaglandin E synthase 2 OS=Danio rerio GN=ptges2 PE=2 SV=1	[more]

BLAST of CU166965 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LSA1_CUCSA	8.6e-31	95.71	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G025110 PE=4 SV=1	[more]
A0A0D2RKR6_GOSRA	2.7e-24	77.94	Uncharacterized protein OS=Gossypium raimondii GN=B456_005G133000 PE=4 SV=1	[more]
A0A0B0NPI4_GOSAR	2.7e-24	77.94	Prostaglandin E synthase 2 OS=Gossypium arboreum GN=F383_16951 PE=4 SV=1	[more]
A0A0D2REB1_GOSRA	2.7e-24	77.94	Uncharacterized protein OS=Gossypium raimondii GN=B456_005G133000 PE=4 SV=1	[more]
A0A0D2SG65_GOSRA	2.7e-24	77.94	Uncharacterized protein OS=Gossypium raimondii GN=B456_005G133000 PE=4 SV=1	[more]

BLAST of CU166965 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449439141\|ref\|XP_004137346.1\|	1.2e-30	95.71	PREDICTED: prostaglandin E synthase 2-like [Cucumis sativus]	[more]
gi\|659106979\|ref\|XP_008453485.1\|	3.0e-29	92.86	PREDICTED: prostaglandin E synthase 2-like [Cucumis melo]	[more]
gi\|763762931\|gb\|KJB30185.1\|	3.9e-24	77.94	hypothetical protein B456_005G133000 [Gossypium raimondii]	[more]
gi\|728833548\|gb\|KHG12991.1\|	3.9e-24	77.94	Prostaglandin E synthase 2 [Gossypium arboreum]	[more]
gi\|763762932\|gb\|KJB30186.1\|	3.9e-24	77.94	hypothetical protein B456_005G133000 [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR012336	Thioredoxin-like_fold

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa1G025110	Csa1G025110	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
H0106851	H0106851	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012336	Thioredoxin-like fold	GENE3D	G3DSA:3.40.30.10		coord: 20..51 score: 3.
IPR012336	Thioredoxin-like fold	unknown	SSF52833	Thioredoxin-like	coord: 17..77 score: 1.
None	No IPR available	PANTHER	PTHR12782	MICROSOMAL PROSTAGLANDIN E SYNTHASE-2	coord: 16..83 score: 3.5
None	No IPR available	PANTHER	PTHR12782:SF8	GLUTATHIONE S-TRANSFERASE FAMILY PROTEIN	coord: 16..83 score: 3.5