CU166375 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU166375
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	SAUR-like auxin-responsive protein family, putative
Location	Chr7 : 1116585 .. 1116822 (-)
Sequence length	238

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

AACGGGCGGCGGAGGATCTCACTGCCAAGAACAAGAAGCTCCTCCTCTGTGGCGAACAAAGGCCATTTTGTAGTCTACACGGTGGACCAAAAACGGTGCGTTTTGCCCATAAGGTATTTGGGAAACTATGTTTTAAAGGAGTTGTTGAAGATGTCGGAGGAGGAGTTTGGGTTGCCGTGCGGATGGACCGATAAAGCTGCCGTGTGAGGCGGCGTTTATGGAGTATATCGTGTATTTG

Library


Library category	ESTs
hermaphrodite flower library	1

Homology

[Close]

BLAST of CU166375 vs. Swiss-Prot
Match: SAU68_ARATH (Auxin-responsive protein SAUR68 OS=Arabidopsis thaliana GN=SAUR68 PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 2.8e-11
Identity = 37/60 (61.67%), Postives = 40/60 (66.67%), Query Frame = 1


Query: 7   RRRISLPR---TRSSSSVANKGHFVVYTVDQKRCVLPIRYLGNYVLKELLKMSEEEFGLP 66
           R+RIS  R   T SSSS   KG FVVYT DQ R   PI YL N V++ELLK+SEEEFG+P
Sbjct: 22  RKRISFQRSNSTTSSSSAVEKGCFVVYTADQVRFAFPISYLSNSVIQELLKISEEEFGIP 81

Query: 67   126
           
Sbjct: 82   81

Query: 127  178
           
Sbjct: 142  81

[Close]

BLAST of CU166375 vs. Swiss-Prot
Match: SAU64_ARATH (Auxin-responsive protein SAUR64 OS=Arabidopsis thaliana GN=SAUR64 PE=2 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 6.1e-11
Identity = 36/61 (59.02%), Postives = 41/61 (67.21%), Query Frame = 1


Query: 7   RRRISLPRTRS--SSSVANKGHFVVYTVDQKRCVLPIRYLGNYVLKELLKMSEEEFGLPC 66
           R+RIS  R+ S  SS+ A KG FVVYT D  R   P+ YL N V +ELLK+SEEEFGLP 
Sbjct: 22  RKRISFQRSSSATSSTAAEKGCFVVYTTDSTRFAFPLSYLSNSVFQELLKISEEEFGLPT 81

Query: 67  G 126
           G
Sbjct: 82  G 82

Query: 127  184
           
Sbjct: 142  82

[Close]

BLAST of CU166375 vs. Swiss-Prot
Match: SAU61_ARATH (Auxin-responsive protein SAUR61 OS=Arabidopsis thaliana GN=SAUR61 PE=2 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.8e-10
Identity = 36/60 (60.00%), Postives = 42/60 (70.00%), Query Frame = 1


Query: 7   RRRISLPR---TRSSSSVANKGHFVVYTVDQKRCVLPIRYLGNYVLKELLKMSEEEFGLP 66
           R+RIS  R   T SSS+ A KG FVVYT D+ R   PI YL N V++ELLK+SEEEFG+P
Sbjct: 22  RKRISFHRSTDTTSSSTAAEKGCFVVYTSDRIRFAFPISYLSNSVIQELLKISEEEFGIP 81

Query: 67   126
           
Sbjct: 82   81

Query: 127  178
           
Sbjct: 142  81

[Close]

BLAST of CU166375 vs. Swiss-Prot
Match: SAU67_ARATH (Auxin-responsive protein SAUR67 OS=Arabidopsis thaliana GN=SAUR67 PE=2 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 2.3e-10
Identity = 35/60 (58.33%), Postives = 40/60 (66.67%), Query Frame = 1


Query: 7   RRRISLPRTR---SSSSVANKGHFVVYTVDQKRCVLPIRYLGNYVLKELLKMSEEEFGLP 66
           R+RIS  R+    SSSS   KG FVVYT D+ R   PI YL N +++ELLK+SEEEFGLP
Sbjct: 23  RKRISFQRSNVFTSSSSTVEKGCFVVYTADKIRFAFPISYLSNSIVQELLKISEEEFGLP 82

Query: 67   126
           
Sbjct: 83   82

Query: 127  178
           
Sbjct: 143  82

[Close]

BLAST of CU166375 vs. Swiss-Prot
Match: SAU66_ARATH (Auxin-responsive protein SAUR66 OS=Arabidopsis thaliana GN=SAUR66 PE=2 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 2.3e-10
Identity = 32/59 (54.24%), Postives = 37/59 (62.71%), Query Frame = 1


Query: 7   RRRISLPRTRSSSSVANKGHFVVYTVDQKRCVLPIRYLGNYVLKELLKMSEEEFGLPCG 66
           R+RIS  R  + S+   KG FVVYT D  R   PI YL N V +E+L++SEEEFGLP G
Sbjct: 22  RKRISFQRPSTRSTTVEKGCFVVYTADNTRFAFPISYLSNSVFQEILEISEEEFGLPTG 80

Query: 67   126
           
Sbjct: 82   80

Query: 127  184
           
Sbjct: 142  80

[Close]

BLAST of CU166375 vs. TrEMBL
Match: A0A0A0K2P5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G018810 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 6.8e-25
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 1


Query: 1   NGRRRISLPRTRSSSSVANKGHFVVYTVDQKRCVLPIRYLGNYVLKELLKMSEEEFGLP 60
           NGRRRISLPRTRSSSSVANKGHFVVYTVDQKRCVLPIRYLGNYVLKELLKMSEEEFGLP
Sbjct: 22  NGRRRISLPRTRSSSSVANKGHFVVYTVDQKRCVLPIRYLGNYVLKELLKMSEEEFGLP 80

Query: 61   120
           
Sbjct: 82   80

Query: 121  178
           
Sbjct: 142  80

[Close]

BLAST of CU166375 vs. TrEMBL
Match: A0A0A0K2P5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G018810 PE=4 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 1.2e-02
Identity = 21/23 (91.30%), Postives = 21/23 (91.30%), Query Frame = 2


Query: 170 GCRADGPIKLPCEAAFMEYIVYL 229
           G  ADGPIKLPCEAAFMEYIVYL
Sbjct: 78  GLPADGPIKLPCEAAFMEYIVYL 100

Query: 230  239
           
Sbjct: 138  100

HSP 2 Score: 81.3 bits (199), Expect = 6.0e-13
Identity = 41/68 (60.29%), Postives = 47/68 (69.12%), Query Frame = 1


Query: 4   GRRRISLPRTRS----------SSSVANKGHFVVYTVDQKRCVLPIRYLGNYVLKELLKM 63
           GR+RISLPR             SS VA KGHFVVYT D++R V PI YL NY+++EL KM
Sbjct: 21  GRKRISLPRANRVANVNNSSDFSSEVAGKGHFVVYTADERRFVFPIAYLNNYIIQELFKM 80

Query: 64  SEEEFGLP 123
           SEEEFGLP
Sbjct: 81  SEEEFGLP 88

Query: 124  178
           
Sbjct: 141  88

[Close]

BLAST of CU166375 vs. TrEMBL
Match: A0A061E5H5_THECC (SAUR-like auxin-responsive protein family, putative OS=Theobroma cacao GN=TCM_006523 PE=4 SV=1)

HSP 1 Score: 37.0 bits (84), Expect = 1.3e+01
Identity = 16/23 (69.57%), Postives = 18/23 (78.26%), Query Frame = 2


Query: 170 GCRADGPIKLPCEAAFMEYIVYL 229
           G  +DGPI LPC+AAFMEY V L
Sbjct: 86  GLPSDGPITLPCDAAFMEYAVSL 108

Query: 230  239
           
Sbjct: 146  108

HSP 2 Score: 80.5 bits (197), Expect = 1.0e-12
Identity = 40/67 (59.70%), Postives = 48/67 (71.64%), Query Frame = 1


Query: 7   RRRISLPR--------TRSSSSVANKGHFVVYTVDQKRCVLPIRYLGNYVLKELLKMSEE 66
           R+RIS PR        + SSSS+  KGHFVVYT DQ R V+P+ YL N V+++LL MSEE
Sbjct: 24  RKRISFPRNGSDADSCSTSSSSIVEKGHFVVYTADQARFVIPLAYLENEVIRQLLNMSEE 83

Query: 67  EFGLPCG 126
           EFGLPCG
Sbjct: 84  EFGLPCG 90

Query: 127  184
           
Sbjct: 144  90

[Close]

BLAST of CU166375 vs. TrEMBL
Match: K4D5X8_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 33.1 bits (74), Expect = 1.9e+02
Identity = 13/23 (56.52%), Postives = 17/23 (73.91%), Query Frame = 2


Query: 170 GCRADGPIKLPCEAAFMEYIVYL 229
           G    GPI LPC++AFM+YI+ L
Sbjct: 86  GLPCGGPITLPCDSAFMDYIISL 108

Query: 230  239
           
Sbjct: 146  108

HSP 2 Score: 80.1 bits (196), Expect = 1.3e-12
Identity = 41/66 (62.12%), Postives = 49/66 (74.24%), Query Frame = 1


Query: 7   RRRISLPRTRS-------SSSVANKGHFVVYTVDQKRCVLPIRYLGNYVLKELLKMSEEE 66
           R+RISLPR  S       SSSV  KGHFVVYT+DQ+R V+P+ YL N V+++LL MSEEE
Sbjct: 24  RKRISLPRNVSDADSCSVSSSVVEKGHFVVYTIDQRRFVIPLAYLENEVIRQLLNMSEEE 83

Query: 67  FGLPCG 126
           FGLP G
Sbjct: 84  FGLPSG 89

Query: 127  184
           
Sbjct: 144  89

[Close]

BLAST of CU166375 vs. TrEMBL
Match: M1B7J0_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400015029 PE=4 SV=1)

HSP 1 Score: 30.4 bits (67), Expect = 1.2e+03
Identity = 12/17 (70.59%), Postives = 15/17 (88.24%), Query Frame = 2


Query: 188 PIKLPCEAAFMEYIVYL 239
           PI LPC++AFM+YIV L
Sbjct: 91  PITLPCDSAFMDYIVSL 107

HSP 2 Score: 77.8 bits (190), Expect = 6.6e-12
Identity = 40/59 (67.80%), Postives = 45/59 (76.27%), Query Frame = 1


Query: 7   RRRISLPRTRSS--SSVANKGHFVVYTVDQKRCVLPIRYLGNYVLKELLKMSEEEFGLP 66
           RRRIS PR  +S  SSVANKGHFVVYT D+KR  +P+ YL   V  ELL+MSEEEFGLP
Sbjct: 22  RRRISFPRRAASQNSSVANKGHFVVYTTDEKRFTVPLEYLSRNVFIELLRMSEEEFGLP 80

Query: 67   126
           
Sbjct: 82   80

Query: 127  178
           
Sbjct: 142  80

[Close]

BLAST of CU166375 vs. NCBI nr
Match: gi|700188066|gb|KGN43299.1| (hypothetical protein Csa_7G018810 [Cucumis sativus])

HSP 1 Score: 120.9 bits (302), Expect = 9.8e-25
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 1


Query: 1   NGRRRISLPRTRSSSSVANKGHFVVYTVDQKRCVLPIRYLGNYVLKELLKMSEEEFGLP 60
           NGRRRISLPRTRSSSSVANKGHFVVYTVDQKRCVLPIRYLGNYVLKELLKMSEEEFGLP
Sbjct: 22  NGRRRISLPRTRSSSSVANKGHFVVYTVDQKRCVLPIRYLGNYVLKELLKMSEEEFGLP 80

Query: 61   120
           
Sbjct: 82   80

Query: 121  178
           
Sbjct: 142  80

[Close]

BLAST of CU166375 vs. NCBI nr
Match: gi|778723154|ref|XP_004144931.2| (PREDICTED: auxin-induced protein 6B-like [Cucumis sativus])

HSP 1 Score: 120.9 bits (302), Expect = 9.8e-25
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 1


Query: 1   NGRRRISLPRTRSSSSVANKGHFVVYTVDQKRCVLPIRYLGNYVLKELLKMSEEEFGLP 60
           NGRRRISLPRTRSSSSVANKGHFVVYTVDQKRCVLPIRYLGNYVLKELLKMSEEEFGLP
Sbjct: 7   NGRRRISLPRTRSSSSVANKGHFVVYTVDQKRCVLPIRYLGNYVLKELLKMSEEEFGLP 65

Query: 61   120
           
Sbjct: 67   65

Query: 121  178
           
Sbjct: 127  65

[Close]

BLAST of CU166375 vs. NCBI nr
Match: gi|590683862|ref|XP_007041697.1| (SAUR-like auxin-responsive protein family, putative [Theobroma cacao])

HSP 1 Score: 81.3 bits (199), Expect = 8.6e-13
Identity = 41/68 (60.29%), Postives = 47/68 (69.12%), Query Frame = 1


Query: 4   GRRRISLPRTRS----------SSSVANKGHFVVYTVDQKRCVLPIRYLGNYVLKELLKM 63
           GR+RISLPR             SS VA KGHFVVYT D++R V PI YL NY+++EL KM
Sbjct: 21  GRKRISLPRANRVANVNNSSDFSSEVAGKGHFVVYTADERRFVFPIAYLNNYIIQELFKM 80

Query: 64  SEEEFGLP 123
           SEEEFGLP
Sbjct: 81  SEEEFGLP 88

Query: 124  178
           
Sbjct: 141  88

[Close]

BLAST of CU166375 vs. NCBI nr
Match: gi|698543404|ref|XP_009766731.1| (PREDICTED: auxin-induced protein 6B-like [Nicotiana sylvestris])

HSP 1 Score: 80.9 bits (198), Expect = 1.1e-12
Identity = 41/67 (61.19%), Postives = 50/67 (74.63%), Query Frame = 1


Query: 7   RRRISLPR--------TRSSSSVANKGHFVVYTVDQKRCVLPIRYLGNYVLKELLKMSEE 66
           R+RISLPR        + SSSS+A KGHFVVYT+DQ+R V+P+ YL N V+ +LL MSEE
Sbjct: 27  RKRISLPRNGSDADSGSTSSSSIAGKGHFVVYTIDQRRFVIPLAYLENEVIMQLLSMSEE 86

Query: 67  EFGLPCG 126
           EFGLP G
Sbjct: 87  EFGLPSG 93

Query: 127  184
           
Sbjct: 147  93

[Close]

BLAST of CU166375 vs. NCBI nr
Match: gi|460409602|ref|XP_004250227.1| (PREDICTED: auxin-induced protein 6B-like [Solanum lycopersicum])

HSP 1 Score: 80.5 bits (197), Expect = 1.5e-12
Identity = 40/67 (59.70%), Postives = 48/67 (71.64%), Query Frame = 1


Query: 7   RRRISLPR--------TRSSSSVANKGHFVVYTVDQKRCVLPIRYLGNYVLKELLKMSEE 66
           R+RIS PR        + SSSS+  KGHFVVYT DQ R V+P+ YL N V+++LL MSEE
Sbjct: 24  RKRISFPRNGSDADSCSTSSSSIVEKGHFVVYTADQARFVIPLAYLENEVIRQLLNMSEE 83

Query: 67  EFGLPCG 126
           EFGLPCG
Sbjct: 84  EFGLPCG 90

Query: 127  184
           
Sbjct: 144  90

The following BLAST results are available for this feature:

BLAST of CU166375 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SAU68_ARATH	2.8e-11	61.67	Auxin-responsive protein SAUR68 OS=Arabidopsis thaliana GN=SAUR68 PE=3 SV=1	[more]
SAU64_ARATH	6.1e-11	59.02	Auxin-responsive protein SAUR64 OS=Arabidopsis thaliana GN=SAUR64 PE=2 SV=1	[more]
SAU61_ARATH	1.8e-10	60.00	Auxin-responsive protein SAUR61 OS=Arabidopsis thaliana GN=SAUR61 PE=2 SV=1	[more]
SAU67_ARATH	2.3e-10	58.33	Auxin-responsive protein SAUR67 OS=Arabidopsis thaliana GN=SAUR67 PE=2 SV=1	[more]
SAU66_ARATH	2.3e-10	54.24	Auxin-responsive protein SAUR66 OS=Arabidopsis thaliana GN=SAUR66 PE=2 SV=1	[more]

BLAST of CU166375 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K2P5_CUCSA	6.8e-25	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G018810 PE=4 SV=1	[more]
A0A0A0K2P5_CUCSA	1.2e-02	91.30	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G018810 PE=4 SV=1	[more]
A0A061E5H5_THECC	1.3e+01	69.57	SAUR-like auxin-responsive protein family, putative OS=Theobroma cacao GN=TCM_00...	[more]
K4D5X8_SOLLC	1.9e+02	56.52	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]
M1B7J0_SOLTU	1.2e+03	70.59	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400015029 PE=4 SV=1	[more]

BLAST of CU166375 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700188066\|gb\|KGN43299.1\|	9.8e-25	100.00	hypothetical protein Csa_7G018810 [Cucumis sativus]	[more]
gi\|778723154\|ref\|XP_004144931.2\|	9.8e-25	100.00	PREDICTED: auxin-induced protein 6B-like [Cucumis sativus]	[more]
gi\|590683862\|ref\|XP_007041697.1\|	8.6e-13	60.29	SAUR-like auxin-responsive protein family, putative [Theobroma cacao]	[more]
gi\|698543404\|ref\|XP_009766731.1\|	1.1e-12	61.19	PREDICTED: auxin-induced protein 6B-like [Nicotiana sylvestris]	[more]
gi\|460409602\|ref\|XP_004250227.1\|	1.5e-12	59.70	PREDICTED: auxin-induced protein 6B-like [Solanum lycopersicum]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR003676	SAUR_fam

Vocabulary: **Biological Process**
Term	Definition
GO:0009733	response to auxin

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009733	response to auxin

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa7G018810	Csa7G018810	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
H0101151	H0101151	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003676	Small auxin-up RNA	PFAM	PF02519	Auxin_inducible	coord: 3..59 score: 8.3
None	No IPR available	PANTHER	PTHR31175	AUXIN-RESPONSIVE FAMILY PROTEIN	coord: 2..59 score: 7.0