CU166252 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU166252
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr6 : 7958584 .. 7959673 (-)
Sequence length	248

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

ATGCTTAGCTTTGATATCTGATAAAATCCAACAGAGTTTAACATGAGGCTGAAGTTCATGGCTGCTATCGACGTGTTGGCGATAATGGAGAACCAAAGAAGCTCCCAAAAGGGAACCGACTTGGATTCAGAATAGCCAGCGGCATTTGAAATCCAACCAATTAATGCAGTGACAGAAAAGTGAAATCCAGTTAAAGTTGTAGCAAAAGGAAAATGCAAAAGCCAGTTTGAGACATGAGTTGCTTATTA

Library


Library category	ESTs
hermaphrodite flower library	1

Homology

[Close]

BLAST of CU166252 vs. Swiss-Prot
Match: UGAL2_ARATH (UDP-galactose transporter 2 OS=Arabidopsis thaliana GN=UDP-GALT2 PE=2 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 5.4e-26
Identity = 57/70 (81.43%), Postives = 59/70 (84.29%), Query Frame = -1


Query: 3   FPFATTLTGFHFSVTALIGWISNAAGYSESKSVPFWELLWFSIIANTSIAAMNFSLMLNS 62
           F FATTLTGFHF+ TAL+G +SNA G S SK VP WELLWFSI+AN SIAAMNFSLMLNS
Sbjct: 43  FGFATTLTGFHFAFTALVGMVSNATGLSASKHVPLWELLWFSIVANISIAAMNFSLMLNS 102

Query: 63  VGFYQISKLS 122
           VGFYQISKLS
Sbjct: 103 VGFYQISKLS 112

Query: 123  182
           
Sbjct: 163  112

Query: 183  213
           
Sbjct: 223  112

[Close]

BLAST of CU166252 vs. TrEMBL
Match: A0A0A0KCR4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G115640 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 8.6e-31
Identity = 69/70 (98.57%), Postives = 69/70 (98.57%), Query Frame = -1


Query: 3   FPFATTLTGFHFSVTALIGWISNAAGYSESKSVPFWELLWFSIIANTSIAAMNFSLMLNS 62
           F FATTLTGFHFSVTALIGWISNAAGYSESKSVPFWELLWFSIIANTSIAAMNFSLMLNS
Sbjct: 73  FSFATTLTGFHFSVTALIGWISNAAGYSESKSVPFWELLWFSIIANTSIAAMNFSLMLNS 132

Query: 63  VGFYQISKLS 122
           VGFYQISKLS
Sbjct: 133 VGFYQISKLS 142

Query: 123  182
           
Sbjct: 193  142

Query: 183  213
           
Sbjct: 253  142

[Close]

BLAST of CU166252 vs. TrEMBL
Match: C4J9D3_MAIZE (Uncharacterized protein OS=Zea mays GN=LOC100384530 PE=2 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 1.9e-25
Identity = 57/70 (81.43%), Postives = 62/70 (88.57%), Query Frame = -1


Query: 3   FPFATTLTGFHFSVTALIGWISNAAGYSESKSVPFWELLWFSIIANTSIAAMNFSLMLNS 62
           F FATTLTGFHF+VTAL+GWISNA GYS SK VP WEL+WFS++ANTSI  MN SLMLNS
Sbjct: 41  FAFATTLTGFHFTVTALVGWISNATGYSVSKHVPLWELVWFSLVANTSITGMNLSLMLNS 100

Query: 63  VGFYQISKLS 122
           VGFYQISKLS
Sbjct: 101 VGFYQISKLS 110

Query: 123  182
           
Sbjct: 161  110

Query: 183  213
           
Sbjct: 221  110

[Close]

BLAST of CU166252 vs. TrEMBL
Match: J3MME3_ORYBR (Uncharacterized protein OS=Oryza brachyantha PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 1.9e-25
Identity = 57/70 (81.43%), Postives = 62/70 (88.57%), Query Frame = -1


Query: 3   FPFATTLTGFHFSVTALIGWISNAAGYSESKSVPFWELLWFSIIANTSIAAMNFSLMLNS 62
           F FATTLTGFHF+VTAL+GWISNA GYS SK VP WEL+WFS++ANTSI  MN SLMLNS
Sbjct: 41  FSFATTLTGFHFTVTALVGWISNATGYSVSKHVPLWELVWFSLVANTSITGMNLSLMLNS 100

Query: 63  VGFYQISKLS 122
           VGFYQISKLS
Sbjct: 101 VGFYQISKLS 110

Query: 123  182
           
Sbjct: 161  110

Query: 183  213
           
Sbjct: 221  110

[Close]

BLAST of CU166252 vs. TrEMBL
Match: A0A0E0LMN5_ORYPU (Uncharacterized protein OS=Oryza punctata PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 1.9e-25
Identity = 57/70 (81.43%), Postives = 62/70 (88.57%), Query Frame = -1


Query: 3   FPFATTLTGFHFSVTALIGWISNAAGYSESKSVPFWELLWFSIIANTSIAAMNFSLMLNS 62
           F FATTLTGFHF+VTAL+GWISNA GYS SK VP WEL+WFS++ANTSI  MN SLMLNS
Sbjct: 41  FSFATTLTGFHFTVTALVGWISNATGYSVSKHVPLWELVWFSLVANTSITGMNLSLMLNS 100

Query: 63  VGFYQISKLS 122
           VGFYQISKLS
Sbjct: 101 VGFYQISKLS 110

Query: 123  182
           
Sbjct: 161  110

Query: 183  213
           
Sbjct: 221  110

[Close]

BLAST of CU166252 vs. TrEMBL
Match: A0A0D3GST7_9ORYZ (Uncharacterized protein OS=Oryza barthii PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 1.9e-25
Identity = 57/70 (81.43%), Postives = 62/70 (88.57%), Query Frame = -1


Query: 3   FPFATTLTGFHFSVTALIGWISNAAGYSESKSVPFWELLWFSIIANTSIAAMNFSLMLNS 62
           F FATTLTGFHF+VTAL+GWISNA GYS SK VP WEL+WFS++ANTSI  MN SLMLNS
Sbjct: 41  FSFATTLTGFHFTVTALVGWISNATGYSVSKHVPLWELVWFSLVANTSITGMNLSLMLNS 100

Query: 63  VGFYQISKLS 122
           VGFYQISKLS
Sbjct: 101 VGFYQISKLS 110

Query: 123  182
           
Sbjct: 161  110

Query: 183  213
           
Sbjct: 221  110

[Close]

BLAST of CU166252 vs. NCBI nr
Match: gi|449444447|ref|XP_004139986.1| (PREDICTED: UDP-galactose transporter 2-like [Cucumis sativus])

HSP 1 Score: 137.9 bits (346), Expect = 8.0e-30
Identity = 69/70 (98.57%), Postives = 69/70 (98.57%), Query Frame = -1


Query: 3   FPFATTLTGFHFSVTALIGWISNAAGYSESKSVPFWELLWFSIIANTSIAAMNFSLMLNS 62
           F FATTLTGFHFSVTALIGWISNAAGYSESKSVPFWELLWFSIIANTSIAAMNFSLMLNS
Sbjct: 73  FSFATTLTGFHFSVTALIGWISNAAGYSESKSVPFWELLWFSIIANTSIAAMNFSLMLNS 132

Query: 63  VGFYQISKLS 122
           VGFYQISKLS
Sbjct: 133 VGFYQISKLS 142

Query: 123  182
           
Sbjct: 193  142

Query: 183  213
           
Sbjct: 253  142

[Close]

BLAST of CU166252 vs. NCBI nr
Match: gi|659094600|ref|XP_008448146.1| (PREDICTED: UDP-galactose transporter 2-like [Cucumis melo])

HSP 1 Score: 136.3 bits (342), Expect = 2.3e-29
Identity = 68/70 (97.14%), Postives = 68/70 (97.14%), Query Frame = -1


Query: 3   FPFATTLTGFHFSVTALIGWISNAAGYSESKSVPFWELLWFSIIANTSIAAMNFSLMLNS 62
           F FATTLTGFHFSVTALIGWISNA GYSESKSVPFWELLWFSIIANTSIAAMNFSLMLNS
Sbjct: 73  FSFATTLTGFHFSVTALIGWISNATGYSESKSVPFWELLWFSIIANTSIAAMNFSLMLNS 132

Query: 63  VGFYQISKLS 122
           VGFYQISKLS
Sbjct: 133 VGFYQISKLS 142

Query: 123  182
           
Sbjct: 193  142

Query: 183  213
           
Sbjct: 253  142

[Close]

BLAST of CU166252 vs. NCBI nr
Match: gi|470128258|ref|XP_004300063.1| (PREDICTED: UDP-galactose transporter 2-like [Fragaria vesca subsp. vesca])

HSP 1 Score: 123.2 bits (308), Expect = 2.0e-25
Identity = 59/70 (84.29%), Postives = 65/70 (92.86%), Query Frame = -1


Query: 3   FPFATTLTGFHFSVTALIGWISNAAGYSESKSVPFWELLWFSIIANTSIAAMNFSLMLNS 62
           F FATTLTGFHF+VTAL+G++SNA+GYS SK VPFWELLWFSI+AN SI AMNFSLMLNS
Sbjct: 44  FSFATTLTGFHFAVTALVGFVSNASGYSASKQVPFWELLWFSIVANVSITAMNFSLMLNS 103

Query: 63  VGFYQISKLS 122
           VGFYQISKLS
Sbjct: 104 VGFYQISKLS 113

Query: 123  182
           
Sbjct: 164  113

Query: 183  213
           
Sbjct: 224  113

[Close]

BLAST of CU166252 vs. NCBI nr
Match: gi|1002286378|ref|XP_015647494.1| (PREDICTED: UDP-galactose transporter 2 [Oryza sativa Japonica Group])

HSP 1 Score: 120.2 bits (300), Expect = 1.7e-24
Identity = 57/70 (81.43%), Postives = 62/70 (88.57%), Query Frame = -1


Query: 3   FPFATTLTGFHFSVTALIGWISNAAGYSESKSVPFWELLWFSIIANTSIAAMNFSLMLNS 62
           F FATTLTGFHF+VTAL+GWISNA GYS SK VP WEL+WFS++ANTSI  MN SLMLNS
Sbjct: 41  FSFATTLTGFHFTVTALVGWISNATGYSVSKHVPLWELVWFSLVANTSITGMNLSLMLNS 100

Query: 63  VGFYQISKLS 122
           VGFYQISKLS
Sbjct: 101 VGFYQISKLS 110

Query: 123  182
           
Sbjct: 161  110

Query: 183  213
           
Sbjct: 221  110

[Close]

BLAST of CU166252 vs. NCBI nr
Match: gi|219887815|gb|ACL54282.1| (unknown [Zea mays])

HSP 1 Score: 120.2 bits (300), Expect = 1.7e-24
Identity = 57/70 (81.43%), Postives = 62/70 (88.57%), Query Frame = -1


Query: 3   FPFATTLTGFHFSVTALIGWISNAAGYSESKSVPFWELLWFSIIANTSIAAMNFSLMLNS 62
           F FATTLTGFHF+VTAL+GWISNA GYS SK VP WEL+WFS++ANTSI  MN SLMLNS
Sbjct: 41  FAFATTLTGFHFTVTALVGWISNATGYSVSKHVPLWELVWFSLVANTSITGMNLSLMLNS 100

Query: 63  VGFYQISKLS 122
           VGFYQISKLS
Sbjct: 101 VGFYQISKLS 110

Query: 123  182
           
Sbjct: 161  110

Query: 183  213
           
Sbjct: 221  110

The following BLAST results are available for this feature:

BLAST of CU166252 vs. Swiss-Prot


Match Name	E-value	Identity	Description
UGAL2_ARATH	5.4e-26	81.43	UDP-galactose transporter 2 OS=Arabidopsis thaliana GN=UDP-GALT2 PE=2 SV=1	[more]

BLAST of CU166252 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KCR4_CUCSA	8.6e-31	98.57	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G115640 PE=4 SV=1	[more]
C4J9D3_MAIZE	1.9e-25	81.43	Uncharacterized protein OS=Zea mays GN=LOC100384530 PE=2 SV=1	[more]
J3MME3_ORYBR	1.9e-25	81.43	Uncharacterized protein OS=Oryza brachyantha PE=4 SV=1	[more]
A0A0E0LMN5_ORYPU	1.9e-25	81.43	Uncharacterized protein OS=Oryza punctata PE=4 SV=1	[more]
A0A0D3GST7_9ORYZ	1.9e-25	81.43	Uncharacterized protein OS=Oryza barthii PE=4 SV=1	[more]

BLAST of CU166252 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449444447\|ref\|XP_004139986.1\|	8.0e-30	98.57	PREDICTED: UDP-galactose transporter 2-like [Cucumis sativus]	[more]
gi\|659094600\|ref\|XP_008448146.1\|	2.3e-29	97.14	PREDICTED: UDP-galactose transporter 2-like [Cucumis melo]	[more]
gi\|470128258\|ref\|XP_004300063.1\|	2.0e-25	84.29	PREDICTED: UDP-galactose transporter 2-like [Fragaria vesca subsp. vesca]	[more]
gi\|1002286378\|ref\|XP_015647494.1\|	1.7e-24	81.43	PREDICTED: UDP-galactose transporter 2 [Oryza sativa Japonica Group]	[more]
gi\|219887815\|gb\|ACL54282.1\|	1.7e-24	81.43	unknown [Zea mays]	[more]

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa6G115640	Csa6G115640	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
H0099883	H0099883	EST