CU164221 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU164221
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	ADP-ribosylation factor
Location	Chr7 : 4781192 .. 4781401 (+)
Sequence length	213

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

GATTATGTCATTTCCCTGTAAATTGATTATTTTGCATCGTTTGAACTAAGAACTAAAGACACTAGGTGGTGCTGGTTTGAAAATTTTGTCATCTTCATTATATTCCTTGATTTCGGACATGGGTGCAGTGATATCTAGGTTGAGGAAGAGACTTTTTCAGAACCGTGAAGTGAGAATCCTGATGCTCGGTCTTGATGCGTCAGGGAAGACAAC

Library


Library category	ESTs
hermaphrodite flower library	1

Homology

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BLAST of CU164221 vs. TrEMBL
Match: A0A0A0K7V4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G072830 PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 4.3e-07
Identity = 31/31 (100.00%), Postives = 31/31 (100.00%), Query Frame = 2


Query: 119 MGAVISRLRKRLFQNREVRILMLGLDASGKT 178
           MGAVISRLRKRLFQNREVRILMLGLDASGKT
Sbjct: 1   MGAVISRLRKRLFQNREVRILMLGLDASGKT 31

Query: 179  212
           
Sbjct: 61   31

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BLAST of CU164221 vs. NCBI nr
Match: gi|778730201|ref|XP_011659724.1| (PREDICTED: ADP-ribosylation factor 1-like [Cucumis sativus])

HSP 1 Score: 68.9 bits (167), Expect = 3.9e-09
Identity = 39/54 (72.22%), Postives = 39/54 (72.22%), Query Frame = 2


Query: 50  ELKTLGGAGXXXXXXXXXXXXXDMGAVISRLRKRLFQNREVRILMLGLDASGKT 109
           EL T GGAG             DMGAVISRLRKRLFQNREVRILMLGLDASGKT
Sbjct: 144 ELST-GGAGLKILSSSLYSLISDMGAVISRLRKRLFQNREVRILMLGLDASGKT 196

Query: 110  169
           
Sbjct: 204  196

Query: 170  212
           
Sbjct: 264  196

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BLAST of CU164221 vs. NCBI nr
Match: gi|659081062|ref|XP_008441130.1| (PREDICTED: uncharacterized protein LOC103485359 [Cucumis melo])

HSP 1 Score: 66.2 bits (160), Expect = 2.5e-08
Identity = 35/49 (71.43%), Postives = 35/49 (71.43%), Query Frame = 2


Query: 65  GGAGXXXXXXXXXXXXXDMGAVISRLRKRLFQNREVRILMLGLDASGKT 124
           GGAG             DMGAVISRLRKRLFQNREVRILMLG DASGKT
Sbjct: 72  GGAGLKILSSSLYSLISDMGAVISRLRKRLFQNREVRILMLGFDASGKT 120

Query: 125  184
           
Sbjct: 132  120

Query: 185  212
           
Sbjct: 192  120

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BLAST of CU164221 vs. NCBI nr
Match: gi|700188663|gb|KGN43896.1| (hypothetical protein Csa_7G072830 [Cucumis sativus])

HSP 1 Score: 61.6 bits (148), Expect = 6.2e-07
Identity = 31/31 (100.00%), Postives = 31/31 (100.00%), Query Frame = 2


Query: 119 MGAVISRLRKRLFQNREVRILMLGLDASGKT 178
           MGAVISRLRKRLFQNREVRILMLGLDASGKT
Sbjct: 1   MGAVISRLRKRLFQNREVRILMLGLDASGKT 31

Query: 179  212
           
Sbjct: 61   31

[Close]

BLAST of CU164221 vs. NCBI nr
Match: gi|659109994|ref|XP_008454992.1| (PREDICTED: ADP-ribosylation factor 1-like [Cucumis melo])

HSP 1 Score: 59.3 bits (142), Expect = 3.1e-06
Identity = 30/31 (96.77%), Postives = 30/31 (96.77%), Query Frame = 2


Query: 119 MGAVISRLRKRLFQNREVRILMLGLDASGKT 178
           MGAVISRLRKRL QNREVRILMLGLDASGKT
Sbjct: 1   MGAVISRLRKRLLQNREVRILMLGLDASGKT 31

Query: 179  212
           
Sbjct: 61   31

The following BLAST results are available for this feature:

BLAST of CU164221 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K7V4_CUCSA	4.3e-07	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G072830 PE=3 SV=1	[more]

BLAST of CU164221 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778730201\|ref\|XP_011659724.1\|	3.9e-09	72.22	PREDICTED: ADP-ribosylation factor 1-like [Cucumis sativus]	[more]
gi\|659081062\|ref\|XP_008441130.1\|	2.5e-08	71.43	PREDICTED: uncharacterized protein LOC103485359 [Cucumis melo]	[more]
gi\|700188663\|gb\|KGN43896.1\|	6.2e-07	100.00	hypothetical protein Csa_7G072830 [Cucumis sativus]	[more]
gi\|659109994\|ref\|XP_008454992.1\|	3.1e-06	96.77	PREDICTED: ADP-ribosylation factor 1-like [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR006689	Small_GTPase_ARF/SAR
IPR027417	P-loop_NTPase

Vocabulary: **Molecular Function**
Term	Definition
GO:0005525	GTP binding

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005525	GTP binding

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa7G072830	Csa7G072830	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
H0080140	H0080140	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006689	Small GTPase superfamily, ARF/SAR type	PFAM	PF00025	Arf	coord: 9..32 score: 1.
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	G3DSA:3.40.50.300		coord: 2..32 score: 1.
IPR027417	P-loop containing nucleoside triphosphate hydrolase	unknown	SSF52540	P-loop containing nucleoside triphosphate hydrolases	coord: 7..32 score: 9.6