CU163667 (transcribed_cluster) Cucumber (Chinese Long) v2

NameCU163667
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 27081443 .. 27081582 (-)
Sequence length142
The following sequences are available for this feature:

transcribed_cluster sequence

CGTCCAAAAGTTGAAAATTCTATAGTCAACATCAGCTTTGCAAGAGTTGGTTCTTGCTTTCTGATAAGCTTAGCCCTTTATAAACGTCAAGCATTGGAAATGTCTTGTTCGAACGCTTGGAAGAATCTCCAGAAATAACTCC
BLAST of CU163667 vs. TrEMBL
Match: A0A0A0M3C6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G666460 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 8.2e-10
Identity = 35/36 (97.22%), Postives = 35/36 (97.22%), Query Frame = -1

Query: 35  GVISGDSSKRSNKTFPMLDVYKGLSLSESKNQLLQS 94
           GVISGDSSKR NKTFPMLDVYKGLSLSESKNQLLQS
Sbjct: 546 GVISGDSSKRLNKTFPMLDVYKGLSLSESKNQLLQS 581

Query: 95  143
           
Sbjct: 606 581

BLAST of CU163667 vs. NCBI nr
Match: gi|449449675|ref|XP_004142590.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g04760, chloroplastic [Cucumis sativus])

HSP 1 Score: 70.9 bits (172), Expect = 6.9e-10
Identity = 35/36 (97.22%), Postives = 35/36 (97.22%), Query Frame = -1

Query: 35  GVISGDSSKRSNKTFPMLDVYKGLSLSESKNQLLQS 94
           GVISGDSSKR NKTFPMLDVYKGLSLSESKNQLLQS
Sbjct: 546 GVISGDSSKRLNKTFPMLDVYKGLSLSESKNQLLQS 581

Query: 95  143
           
Sbjct: 606 581

BLAST of CU163667 vs. NCBI nr
Match: gi|659086091|ref|XP_008443759.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g04760, chloroplastic [Cucumis melo])

HSP 1 Score: 67.8 bits (164), Expect = 5.8e-09
Identity = 34/36 (94.44%), Postives = 34/36 (94.44%), Query Frame = -1

Query: 35  GVISGDSSKRSNKTFPMLDVYKGLSLSESKNQLLQS 94
           GVIS DSSKR NKTFPMLDVYKGLSLSESKNQLLQS
Sbjct: 546 GVISEDSSKRLNKTFPMLDVYKGLSLSESKNQLLQS 581

Query: 95  143
           
Sbjct: 606 581

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0M3C6_CUCSA8.2e-1097.22Uncharacterized protein OS=Cucumis sativus GN=Csa_1G666460 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|449449675|ref|XP_004142590.1|6.9e-1097.22PREDICTED: pentatricopeptide repeat-containing protein At3g04760, chloroplastic ... [more]
gi|659086091|ref|XP_008443759.1|5.8e-0994.44PREDICTED: pentatricopeptide repeat-containing protein At3g04760, chloroplastic ... [more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa1G666460Csa1G666460gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
H0074904H0074904EST