CU162313 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU162313
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr1 : 3314559 .. 3315556 (+)
Sequence length	205

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

CTTTCCTTCTTCGATAAGTTCCTGAAATGCCTTTCAGTTGCTCTATAAAAGGCACACTTGGCCTCCATTTCGAAGAATCATAAACAAAAGACCCAAATAGGGGAACATACCGGTCTGGCCAGTGTATTTGCAGTAAGTCAATGTAGTCAGTGTTCAGCCGCTTCAGACTTTTCTCTACACTTTCTCTGATATTGGCACGATCAAC

Library


Library category	ESTs
hermaphrodite flower library	1

Homology

[Close]

BLAST of CU162313 vs. Swiss-Prot
Match: TAS_SHIFL (Protein tas OS=Shigella flexneri GN=tas PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 4.9e-09
Identity = 29/68 (42.65%), Postives = 38/68 (55.88%), Query Frame = -1


Query: 2   VDRANIRESVEKSLKRLNTDYIDLLQIHWPDRYVPLFGSFVYDSSKWRPSVPFIEQLKGI 61
           +DR NIRE++  SLKRL TDY+DL Q+HWP R    FG   Y  +   P+V  ++ L  +
Sbjct: 105 LDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDAL 164

Query: 62  SGTYRRRK 121
           +   R  K
Sbjct: 165 AEYQRAGK 172

Query: 122  181
           
Sbjct: 225  172

Query: 182  206
           
Sbjct: 285  172

[Close]

BLAST of CU162313 vs. Swiss-Prot
Match: TAS_ECOLI (Protein tas OS=Escherichia coli (strain K12) GN=tas PE=1 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 4.9e-09
Identity = 29/68 (42.65%), Postives = 38/68 (55.88%), Query Frame = -1


Query: 2   VDRANIRESVEKSLKRLNTDYIDLLQIHWPDRYVPLFGSFVYDSSKWRPSVPFIEQLKGI 61
           +DR NIRE++  SLKRL TDY+DL Q+HWP R    FG   Y  +   P+V  ++ L  +
Sbjct: 105 LDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDAL 164

Query: 62  SGTYRRRK 121
           +   R  K
Sbjct: 165 AEYQRAGK 172

Query: 122  181
           
Sbjct: 225  172

Query: 182  206
           
Sbjct: 285  172

[Close]

BLAST of CU162313 vs. Swiss-Prot
Match: ALKE_BABBO (Aldo-keto reductase (Fragment) OS=Babesia bovis PE=2 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 2.5e-08
Identity = 31/67 (46.27%), Postives = 40/67 (59.70%), Query Frame = -1


Query: 26  VDRANIRESVEKSLKRLNTDYIDLLQIHWPDRYVPL-----FGSFVYDSSKW--RPSVPF 85
           + + NI ++V+ SL RLNTDYIDLLQ+HWPDRYVP+     F    +D+       SVP 
Sbjct: 26  LSKDNILKAVDGSLSRLNTDYIDLLQLHWPDRYVPMNANGDFHEVFHDTENMIDENSVPL 85

Query: 86  IEQLKGI 145
            +QL  +
Sbjct: 86  EDQLDAL 92

Query: 146  205
           
Sbjct: 146  92

[Close]

BLAST of CU162313 vs. Swiss-Prot
Match: GS69_BACSU (General stress protein 69 OS=Bacillus subtilis (strain 168) GN=yhdN PE=1 SV=2)

HSP 1 Score: 53.9 bits (128), Expect = 7.9e-07
Identity = 24/35 (68.57%), Postives = 25/35 (71.43%), Query Frame = -1


Query: 98  DRANIRESVEKSLKRLNTDYIDLLQIHWPDRYVPL 157
           +RA I E VE SLKRL TDYIDL Q+HWPD  VP+
Sbjct: 99  NRARIVEEVENSLKRLQTDYIDLYQVHWPDPLVPI 133

Query: 158  203
           
Sbjct: 159  133

[Close]

BLAST of CU162313 vs. TrEMBL
Match: A0A0A0LPX0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G031740 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 1.2e-25
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = -1


Query: 32  VDRANIRESVEKSLKRLNTDYIDLLQIHWPDRYVPLFGSFVYDSSKWRPSVPFIEQLK 91
           VDRANIRESVEKSLKRLNTDYIDLLQIHWPDRYVPLFGSFVYDSSKWRPSVPFIEQLK
Sbjct: 211 VDRANIRESVEKSLKRLNTDYIDLLQIHWPDRYVPLFGSFVYDSSKWRPSVPFIEQLK 268

Query: 92   151
           
Sbjct: 271  268

Query: 152  206
           
Sbjct: 331  268

[Close]

BLAST of CU162313 vs. TrEMBL
Match: A0A0D2NHD1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G025500 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 4.2e-23
Identity = 51/60 (85.00%), Postives = 55/60 (91.67%), Query Frame = -1


Query: 26  VDRANIRESVEKSLKRLNTDYIDLLQIHWPDRYVPLFGSFVYDSSKWRPSVPFIEQLKGI 85
           VD  NIRESVEKSLKRLNTDYIDLLQIHWPDRYVPLFG + YDSSKWRPS+PF+EQLK +
Sbjct: 170 VDAVNIRESVEKSLKRLNTDYIDLLQIHWPDRYVPLFGEYFYDSSKWRPSIPFVEQLKAL 229

Query: 86   145
           
Sbjct: 230  229

Query: 146  205
           
Sbjct: 290  229

[Close]

BLAST of CU162313 vs. TrEMBL
Match: A0A0B0PIP2_GOSAR (Protein tas OS=Gossypium arboreum GN=F383_09383 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 4.2e-23
Identity = 51/60 (85.00%), Postives = 55/60 (91.67%), Query Frame = -1


Query: 26  VDRANIRESVEKSLKRLNTDYIDLLQIHWPDRYVPLFGSFVYDSSKWRPSVPFIEQLKGI 85
           VD  NIRESVEKSLKRLNTDYIDLLQIHWPDRYVPLFG + YDSSKWRPS+PF+EQLK +
Sbjct: 170 VDAVNIRESVEKSLKRLNTDYIDLLQIHWPDRYVPLFGEYFYDSSKWRPSIPFVEQLKAL 229

Query: 86   145
           
Sbjct: 230  229

Query: 146  205
           
Sbjct: 290  229

[Close]

BLAST of CU162313 vs. TrEMBL
Match: A0A0D2Q702_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G025400 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 4.2e-23
Identity = 51/60 (85.00%), Postives = 55/60 (91.67%), Query Frame = -1


Query: 26  VDRANIRESVEKSLKRLNTDYIDLLQIHWPDRYVPLFGSFVYDSSKWRPSVPFIEQLKGI 85
           VD  NIRESVEKSLKRLNTDYIDLLQIHWPDRYVPLFG + YDSSKWRPS+PF+EQLK +
Sbjct: 170 VDAVNIRESVEKSLKRLNTDYIDLLQIHWPDRYVPLFGEYFYDSSKWRPSIPFVEQLKAL 229

Query: 86   145
           
Sbjct: 230  229

Query: 146  205
           
Sbjct: 290  229

[Close]

BLAST of CU162313 vs. TrEMBL
Match: A0A0D2M5Y7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G025400 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 4.2e-23
Identity = 51/60 (85.00%), Postives = 55/60 (91.67%), Query Frame = -1


Query: 26  VDRANIRESVEKSLKRLNTDYIDLLQIHWPDRYVPLFGSFVYDSSKWRPSVPFIEQLKGI 85
           VD  NIRESVEKSLKRLNTDYIDLLQIHWPDRYVPLFG + YDSSKWRPS+PF+EQLK +
Sbjct: 174 VDAVNIRESVEKSLKRLNTDYIDLLQIHWPDRYVPLFGEYFYDSSKWRPSIPFVEQLKAL 233

Query: 86   145
           
Sbjct: 234  233

Query: 146  205
           
Sbjct: 294  233

[Close]

BLAST of CU162313 vs. NCBI nr
Match: gi|449439219|ref|XP_004137384.1| (PREDICTED: aldo-keto reductase [Cucumis sativus])

HSP 1 Score: 124.8 bits (312), Expect = 5.8e-26
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = -1


Query: 32  VDRANIRESVEKSLKRLNTDYIDLLQIHWPDRYVPLFGSFVYDSSKWRPSVPFIEQLK 91
           VDRANIRESVEKSLKRLNTDYIDLLQIHWPDRYVPLFGSFVYDSSKWRPSVPFIEQLK
Sbjct: 149 VDRANIRESVEKSLKRLNTDYIDLLQIHWPDRYVPLFGSFVYDSSKWRPSVPFIEQLK 206

Query: 92   151
           
Sbjct: 209  206

Query: 152  206
           
Sbjct: 269  206

[Close]

BLAST of CU162313 vs. NCBI nr
Match: gi|700208854|gb|KGN63950.1| (hypothetical protein Csa_1G031740 [Cucumis sativus])

HSP 1 Score: 124.8 bits (312), Expect = 5.8e-26
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = -1


Query: 32  VDRANIRESVEKSLKRLNTDYIDLLQIHWPDRYVPLFGSFVYDSSKWRPSVPFIEQLK 91
           VDRANIRESVEKSLKRLNTDYIDLLQIHWPDRYVPLFGSFVYDSSKWRPSVPFIEQLK
Sbjct: 211 VDRANIRESVEKSLKRLNTDYIDLLQIHWPDRYVPLFGSFVYDSSKWRPSVPFIEQLK 268

Query: 92   151
           
Sbjct: 271  268

Query: 152  206
           
Sbjct: 331  268

[Close]

BLAST of CU162313 vs. NCBI nr
Match: gi|659068729|ref|XP_008445879.1| (PREDICTED: homeobox-leucine zipper protein HDG11-like [Cucumis melo])

HSP 1 Score: 122.5 bits (306), Expect = 2.9e-25
Identity = 56/58 (96.55%), Postives = 58/58 (100.00%), Query Frame = -1


Query: 32  VDRANIRESVEKSLKRLNTDYIDLLQIHWPDRYVPLFGSFVYDSSKWRPSVPFIEQLK 91
           VDR+NIRESVEKSLKRLNTDYIDLLQIHWPDRYVPLFG+FVYDSSKWRPSVPFIEQLK
Sbjct: 857 VDRSNIRESVEKSLKRLNTDYIDLLQIHWPDRYVPLFGTFVYDSSKWRPSVPFIEQLK 914

Query: 92   151
           
Sbjct: 917  914

Query: 152  206
           
Sbjct: 977  914

[Close]

BLAST of CU162313 vs. NCBI nr
Match: gi|823130287|ref|XP_012452809.1| (PREDICTED: aldo-keto reductase-like [Gossypium raimondii])

HSP 1 Score: 116.7 bits (291), Expect = 1.6e-23
Identity = 51/60 (85.00%), Postives = 55/60 (91.67%), Query Frame = -1


Query: 26  VDRANIRESVEKSLKRLNTDYIDLLQIHWPDRYVPLFGSFVYDSSKWRPSVPFIEQLKGI 85
           VD  NIRESVEKSLKRLNTDYIDLLQIHWPDRYVPLFG + YDSSKWRPS+PF+EQLK +
Sbjct: 170 VDAVNIRESVEKSLKRLNTDYIDLLQIHWPDRYVPLFGEYFYDSSKWRPSIPFVEQLKAL 229

Query: 86   145
           
Sbjct: 230  229

Query: 146  205
           
Sbjct: 290  229

[Close]

BLAST of CU162313 vs. NCBI nr
Match: gi|728846875|gb|KHG26318.1| (Protein tas [Gossypium arboreum])

HSP 1 Score: 116.7 bits (291), Expect = 1.6e-23
Identity = 51/60 (85.00%), Postives = 55/60 (91.67%), Query Frame = -1


Query: 26  VDRANIRESVEKSLKRLNTDYIDLLQIHWPDRYVPLFGSFVYDSSKWRPSVPFIEQLKGI 85
           VD  NIRESVEKSLKRLNTDYIDLLQIHWPDRYVPLFG + YDSSKWRPS+PF+EQLK +
Sbjct: 170 VDAVNIRESVEKSLKRLNTDYIDLLQIHWPDRYVPLFGEYFYDSSKWRPSIPFVEQLKAL 229

Query: 86   145
           
Sbjct: 230  229

Query: 146  205
           
Sbjct: 290  229

The following BLAST results are available for this feature:

BLAST of CU162313 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TAS_SHIFL	4.9e-09	42.65	Protein tas OS=Shigella flexneri GN=tas PE=3 SV=1	[more]
TAS_ECOLI	4.9e-09	42.65	Protein tas OS=Escherichia coli (strain K12) GN=tas PE=1 SV=1	[more]
ALKE_BABBO	2.5e-08	46.27	Aldo-keto reductase (Fragment) OS=Babesia bovis PE=2 SV=1	[more]
GS69_BACSU	7.9e-07	68.57	General stress protein 69 OS=Bacillus subtilis (strain 168) GN=yhdN PE=1 SV=2	[more]

BLAST of CU162313 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LPX0_CUCSA	1.2e-25	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G031740 PE=4 SV=1	[more]
A0A0D2NHD1_GOSRA	4.2e-23	85.00	Uncharacterized protein OS=Gossypium raimondii GN=B456_002G025500 PE=4 SV=1	[more]
A0A0B0PIP2_GOSAR	4.2e-23	85.00	Protein tas OS=Gossypium arboreum GN=F383_09383 PE=4 SV=1	[more]
A0A0D2Q702_GOSRA	4.2e-23	85.00	Uncharacterized protein OS=Gossypium raimondii GN=B456_002G025400 PE=4 SV=1	[more]
A0A0D2M5Y7_GOSRA	4.2e-23	85.00	Uncharacterized protein OS=Gossypium raimondii GN=B456_002G025400 PE=4 SV=1	[more]

BLAST of CU162313 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449439219\|ref\|XP_004137384.1\|	5.8e-26	100.00	PREDICTED: aldo-keto reductase [Cucumis sativus]	[more]
gi\|700208854\|gb\|KGN63950.1\|	5.8e-26	100.00	hypothetical protein Csa_1G031740 [Cucumis sativus]	[more]
gi\|659068729\|ref\|XP_008445879.1\|	2.9e-25	96.55	PREDICTED: homeobox-leucine zipper protein HDG11-like [Cucumis melo]	[more]
gi\|823130287\|ref\|XP_012452809.1\|	1.6e-23	85.00	PREDICTED: aldo-keto reductase-like [Gossypium raimondii]	[more]
gi\|728846875\|gb\|KHG26318.1\|	1.6e-23	85.00	Protein tas [Gossypium arboreum]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR001395	Aldo/keto reductase/potassium channel subunit beta
IPR023210	NADP_OxRdtase_dom

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa1G031740	Csa1G031740	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
H0060271	H0060271	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001395	Aldo/keto reductase/potassium channel subunit beta	PANTHER	PTHR11732	ALDO/KETO REDUCTASE	coord: 1..35 score: 1.7E-19coord: 53..58 score: 1.7
IPR023210	NADP-dependent oxidoreductase domain	GENE3D	G3DSA:3.20.20.100		coord: 2..61 score: 2.8
IPR023210	NADP-dependent oxidoreductase domain	PFAM	PF00248	Aldo_ket_red	coord: 3..56 score: 9.6
IPR023210	NADP-dependent oxidoreductase domain	unknown	SSF51430	NAD(P)-linked oxidoreductase	coord: 2..61 score: 1.83
None	No IPR available	PANTHER	PTHR11732:SF255	ARYL-ALCOHOL DEHYDROGENASE YPL088W-RELATED	coord: 53..58 score: 1.7E-19coord: 1..35 score: 1.7